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Nanopore metagenomics enables rapid clinical diagnosis of bacterial lower respiratory infection.
Published in:
Nature Biotechnology, 2019, v. 37, n. 7, p. 783, doi. 10.1038/s41587-019-0156-5
By:
- Charalampous, Themoula;
- Kay, Gemma L.;
- Richardson, Hollian;
- Aydin, Alp;
- Baldan, Rossella;
- Jeanes, Christopher;
- Rae, Duncan;
- Grundy, Sara;
- Turner, Daniel J.;
- Wain, John;
- Leggett, Richard M.;
- Livermore, David M.;
- O'Grady, Justin
Publication type:
Article
Whole-Genome Sequencing of Brachyspira hyodysenteriae Isolates From England and Wales Reveals Similarities to European Isolates and Mutations Associated With Reduced Sensitivity to Antimicrobials.
Published in:
Frontiers in Microbiology, 2021, v. 12, p. 1, doi. 10.3389/fmicb.2021.713233
By:
- Stubberfield, Emma;
- Sheldon, Jonathan;
- Card, Roderick M.;
- AbuOun, Manal;
- Rogers, Jon;
- Williamson, Susanna;
- Kay, Gemma L.;
- Pallen, Mark J.;
- Anjum, Muna F.
Publication type:
Article
Identification and characterisation of enteroaggregative Escherichia coli subtypes associated with human disease.
Published in:
Scientific Reports, 2020, v. 10, n. 1, p. 1, doi. 10.1038/s41598-020-64424-3
By:
- Ellis, Samuel J.;
- Crossman, Lisa C.;
- McGrath, Conor J.;
- Chattaway, Marie A.;
- Hölken, Johanna M.;
- Brett, Bernard;
- Bundy, Leah;
- Kay, Gemma L.;
- Wain, John;
- Schüller, Stephanie
Publication type:
Article
Evolution of Mycobacterium tuberculosis complex lineages and their role in an emerging threat of multidrug resistant tuberculosis in Bamako, Mali.
Published in:
Scientific Reports, 2020, v. 10, n. 1, p. 1, doi. 10.1038/s41598-019-56001-0
By:
- Senghore, Madikay;
- Diarra, Bassirou;
- Gehre, Florian;
- Otu, Jacob;
- Worwui, Archibald;
- Muhammad, Abdul Khalie;
- Kwambana-Adams, Brenda;
- Kay, Gemma L.;
- Sanogo, Moumine;
- Baya, Bocar;
- Orsega, Susan;
- Doumbia, Seydou;
- Diallo, Souleymane;
- de Jong, Bouke C.;
- Pallen, Mark J.;
- Antonio, Martin
Publication type:
Article
Eighteenth-century genomes show that mixed infections were common at time of peak tuberculosis in Europe.
Published in:
Nature Communications, 2015, v. 6, n. 4, p. 6717, doi. 10.1038/ncomms7717
By:
- Kay, Gemma L.;
- Sergeant, Martin J.;
- Zhou, Zhemin;
- Chan, Jacqueline Z.-M.;
- Millard, Andrew;
- Quick, Joshua;
- Szikossy, Ildikó;
- Pap, Ildikó;
- Spigelman, Mark;
- Loman, Nicholas J.;
- Achtman, Mark;
- Donoghue, Helen D.;
- Pallen, Mark J.
Publication type:
Article
Development and proof-of-concept demonstration of a clinical metagenomics method for the rapid detection of bloodstream infection.
Published in:
BMC Medical Genomics, 2024, v. 17, n. 1, p. 1, doi. 10.1186/s12920-024-01835-5
By:
- Moragues-Solanas, Lluis;
- Le-Viet, Thanh;
- McSorley, Elinor;
- Halford, Carl;
- Lockhart, Daniel S.;
- Aydin, Alp;
- Kay, Gemma L.;
- Elumogo, Ngozi;
- Mullen, William;
- O'Grady, Justin;
- Gilmour, Matthew W.
Publication type:
Article
An inter-laboratory study to investigate the impact of the bioinformatics component on microbiome analysis using mock communities.
Published in:
Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-89881-2
By:
- O'Sullivan, Denise M.;
- Doyle, Ronan M.;
- Temisak, Sasithon;
- Redshaw, Nicholas;
- Whale, Alexandra S.;
- Logan, Grace;
- Huang, Jiabin;
- Fischer, Nicole;
- Amos, Gregory C. A.;
- Preston, Mark D.;
- Marchesi, Julian R.;
- Wagner, Josef;
- Parkhill, Julian;
- Motro, Yair;
- Denise, Hubert;
- Finn, Robert D.;
- Harris, Kathryn A.;
- Kay, Gemma L.;
- O'Grady, Justin;
- Ransom-Jones, Emma
Publication type:
Article
The pathophysiology of bile acid diarrhoea: differences in the colonic microbiome, metabolome and bile acids.
Published in:
Scientific Reports, 2020, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41598-020-77374-7
By:
- Sagar, Nidhi M.;
- Duboc, Henri;
- Kay, Gemma L.;
- Alam, Mohammad T.;
- Wicaksono, Alfian N.;
- Covington, James A.;
- Quince, Christopher;
- Kokkorou, Margarita;
- Svolos, Vaios;
- Palmieri, Lola J.;
- Gerasimidis, Konstantinos;
- Walters, Julian R. F.;
- Arasaradnam, Ramesh P.
Publication type:
Article
Metagenomics and microscope revealed T. trichiura and other intestinal parasites in a cesspit of an Italian nineteenth century aristocratic palace.
Published in:
Scientific Reports, 2020, v. 10, n. 1, p. 1, doi. 10.1038/s41598-020-69497-8
By:
- Chessa, Daniela;
- Murgia, Manuela;
- Sias, Emanuela;
- Deligios, Massimo;
- Mazzarello, Vittorio;
- Fiamma, Maura;
- Rovina, Daniela;
- Carenti, Gabriele;
- Ganau, Giulia;
- Pintore, Elisabetta;
- Fiori, Mauro;
- Kay, Gemma L.;
- Ponzeletti, Alessandro;
- Cappuccinelli, Piero;
- Kelvin, David J.;
- Wain, John;
- Rubino, Salvatore
Publication type:
Article
Identification of the anti-mycobacterial functional properties of piperidinol derivatives.
Published in:
2017
By:
- Guy, Collette S;
- Tichauer, Esther;
- Kay, Gemma L;
- Phillips, Daniel J;
- Bailey, Trisha L;
- Harrison, James;
- Furze, Christopher M;
- Millard, Andrew D;
- Gibson, Matthew I;
- Pallen, Mark J;
- Fullam, Elizabeth
Publication type:
journal article
Hybrid metagenome assemblies link carbohydrate structure with function in the human gut microbiome.
Published in:
Communications Biology, 2022, v. 5, n. 1, p. 1, doi. 10.1038/s42003-022-03865-0
By:
- Ravi, Anuradha;
- Troncoso-Rey, Perla;
- Ahn-Jarvis, Jennifer;
- Corbin, Kendall R.;
- Harris, Suzanne;
- Harris, Hannah;
- Aydin, Alp;
- Kay, Gemma L.;
- Le Viet, Thanh;
- Gilroy, Rachel;
- Pallen, Mark J.;
- Page, Andrew J.;
- O'Grady, Justin;
- Warren, Frederick J.
Publication type:
Article
Bioencapsulation and Colonization Characteristics of Lactococcus lactis subsp. lactis CF4MRS in Artemia franciscana: a Biological Approach for the Control of Edwardsiellosis in Larviculture.
Published in:
Marine Biotechnology, 2018, v. 20, n. 3, p. 353, doi. 10.1007/s10126-018-9813-9
By:
- Loh, Jiun Yan;
- Kay, Gemma L.;
- Ting, Adeline Su Yien
Publication type:
Article
Forensic Analysis Reveals Acute Decompensation of Chronic Heart Failure in a 3500-Year-Old Egyptian Dignitary.
Published in:
Journal of Forensic Sciences, 2016, v. 61, n. 5, p. 1378, doi. 10.1111/1556-4029.13138
By:
- Bianucci, Raffaella;
- Loynes, Robert D.;
- Sutherland, M. Linda;
- Lallo, Rudy;
- Kay, Gemma L.;
- Froesch, Philippe;
- Pallen, Mark J.;
- Charlier, Philippe;
- Nerlich, Andreas G.
Publication type:
Article
Whole-genome sequencing illuminates the evolution and spread of multidrug-resistant tuberculosis in Southwest Nigeria.
Published in:
PLoS ONE, 2017, v. 12, n. 9, p. 1, doi. 10.1371/journal.pone.0184510
By:
- Senghore, Madikay;
- Otu, Jacob;
- Witney, Adam;
- Gehre, Florian;
- Doughty, Emma L.;
- Kay, Gemma L.;
- Butcher, Phillip;
- Salako, Kayode;
- Kehinde, Aderemi;
- Onyejepu, Nneka;
- Idigbe, Emmanuel;
- Corrah, Tumani;
- De Jong, Bouke;
- Pallen, Mark J.;
- Antonio, Martin
Publication type:
Article

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