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Structural similarity of genetically interacting proteins.
- Published in:
- BMC Systems Biology, 2008, v. 2, p. 1, doi. 10.1186/1752-0509-2-69
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- Article
Conformational transitions in human translin enable nucleic acid binding.
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- Nucleic Acids Research, 2013, v. 41, n. 21, p. 9956, doi. 10.1093/nar/gkt765
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- Article
ParaDock: a flexible non-specific DNA—rigid protein docking algorithm.
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- Nucleic Acids Research, 2011, v. 39, n. 20, p. e135, doi. 10.1093/nar/gkr620
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MultiFit: a web server for fitting multiple protein structures into their electron microscopy density map.
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- Nucleic Acids Research, 2011, v. 39, n. suppl_2, p. W167, doi. 10.1093/nar/gkr490
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- Article
FiberDock: a web server for flexible induced-fit backbone refinement in molecular docking.
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- Nucleic Acids Research, 2010, v. 38, n. suppl_2, p. W457, doi. 10.1093/nar/gkq373
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- Article
RsiteDB: a database of protein binding pockets that interact with RNA nucleotide bases.
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- Nucleic Acids Research, 2009, v. 37, n. suppl_1, p. D369, doi. 10.1093/nar/gkn759
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- Article
PharmaGist: a webserver for ligand-based pharmacophore detection.
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- Nucleic Acids Research, 2008, v. 36, n. suppl_2, p. W223, doi. 10.1093/nar/gkn187
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- Article
MolAxis: a server for identification of channels in macromolecules.
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- Nucleic Acids Research, 2008, v. 36, n. suppl_2, p. W210, doi. 10.1093/nar/gkn223
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- Article
FireDock: a web server for fast interaction refinement in molecular docking†.
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- Nucleic Acids Research, 2008, v. 36, n. suppl_2, p. W229, doi. 10.1093/nar/gkn186
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- Article
MultiBind and MAPPIS: webservers for multiple alignment of protein 3D-binding sites and their interactions.
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- Nucleic Acids Research, 2008, v. 36, n. suppl_2, p. W260, doi. 10.1093/nar/gkn185
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- Article
SymmRef: A flexible refinement method for symmetric multimers.
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- Proteins, 2011, v. 79, n. 9, p. 2607, doi. 10.1002/prot.23082
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- Article
Protein structure prediction using a docking-based hierarchical folding scheme.
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- Proteins, 2011, v. 79, n. 6, p. 1759, doi. 10.1002/prot.22999
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- Article
Determining macromolecular assembly structures by molecular docking and fitting into an electron density map.
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- Proteins, 2010, v. 78, n. 15, p. 3205, doi. 10.1002/prot.22845
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- Article
An integrated suite of fast docking algorithms.
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- Proteins, 2010, v. 78, n. 15, p. 3197, doi. 10.1002/prot.22790
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- Article
FiberDock: Flexible induced-fit backbone refinement in molecular docking.
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- Proteins, 2010, v. 78, n. 6, p. 1503, doi. 10.1002/prot.22668
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- Article
Principles of flexible protein-protein docking.
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- Proteins, 2008, v. 73, n. 2, p. 271, doi. 10.1002/prot.22170
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- Article
Constructing templates for protein structure prediction by simulation of protein folding pathways.
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- Proteins, 2008, v. 73, n. 2, p. 380, doi. 10.1002/prot.22073
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- Article
MolAxis: Efficient and accurate identification of channels in macromolecules.
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- Proteins, 2008, v. 73, n. 1, p. 72, doi. 10.1002/prot.22052
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- Article
HingeProt: Automated prediction of hinges in protein structures.
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- Proteins, 2008, v. 70, n. 4, p. 1219, doi. 10.1002/prot.21613
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Automatic prediction of protein interactions with large scale motion.
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- Proteins, 2007, v. 69, n. 4, p. 764, doi. 10.1002/prot.21759
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- Article
FireDock: Fast interaction refinement in molecular docking.
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- Proteins, 2007, v. 69, n. 1, p. 139, doi. 10.1002/prot.21495
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Principles of nanostructure design with protein building blocks.
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- Proteins, 2007, v. 68, n. 1, p. 1, doi. 10.1002/prot.21413
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Correlated mutations: Advances and limitations. A study on fusion proteins and on the Cohesin-Dockerin families.
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- Proteins, 2006, v. 63, n. 4, p. 832, doi. 10.1002/prot.20933
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- Article
Optimization of multiple-sequence alignment based on multiple-structure alignment.
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- Proteins, 2006, v. 62, n. 1, p. 209, doi. 10.1002/prot.20665
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Generation and analysis of a protein-protein interface data set with similar chemical and spatial patterns of interactions.
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- Proteins, 2005, v. 61, n. 1, p. 6, doi. 10.1002/prot.20580
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Geometry-based flexible and symmetric protein docking.
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- Proteins, 2005, v. 60, n. 2, p. 224, doi. 10.1002/prot.20562
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Approaching the CAPRI challenge with an efficient geometry-based docking.
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- Proteins, 2005, v. 60, n. 2, p. 217, doi. 10.1002/prot.20561
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- Article
Potential folding-function interrelationship in proteins.
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- Proteins, 2004, v. 56, n. 4, p. 635, doi. 10.1002/prot.20132
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A method for simultaneous alignment of multiple protein structures.
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- Proteins, 2004, v. 56, n. 1, p. 143, doi. 10.1002/prot.10628
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- Article
Taking geometry to its edge: Fast unbound rigid (and hinge-bent) docking (This article is a US Government work and, as such, is in the public domain in the United States of America.).
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- Proteins, 2003, v. 52, n. 1, p. 107, doi. 10.1002/prot.10397
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- Article
Hierarchical protein folding pathways: A computational study of protein fragments (This article is a US Government work and, as such, is in the public domain in the United States of America.) The content of this publication does not necessarily reflect the view or policies of the Department of Health and Human Services, nor does mention of trade names, commercial products, or organization imply endorsement by the U.S. Government.)
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- Proteins, 2003, v. 51, n. 2, p. 203, doi. 10.1002/prot.10294
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- Article
Conservation and amyloid formation: A study of the gelsolin-like family (This article is a US Government work and, as such, is in the public domain in the United States of America.).
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- Proteins, 2003, v. 51, n. 2, p. 266, doi. 10.1002/prot.10359
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- Article
Flexible protein alignment and hinge detection.
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- Proteins, 2002, v. 48, n. 2, p. 242, doi. 10.1002/prot.10100
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Principles of docking: An overview of search algorithms and a guide to scoring functions.
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- Proteins, 2002, v. 47, n. 4, p. 409, doi. 10.1002/prot.10115
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- Article
Automated multiple structure alignment and detection of a common substructural motif.
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- Proteins, 2001, v. 43, n. 3, p. 235, doi. 10.1002/prot.1034
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- Article
Conservation of polar residues as hot spots at protein interfaces.
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- Proteins, 2000, v. 39, n. 4, p. 331, doi. 10.1002/(SICI)1097-0134(20000601)39:4<331::AID-PROT60>3.0.CO;2-A
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- Article
Examination of shape complementarity in docking of Unbound proteins.
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- Proteins, 1999, v. 36, n. 3, p. 307, doi. 10.1002/(SICI)1097-0134(19990815)36:3<307::AID-PROT5>3.0.CO;2-R
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- Article
Flexible structural comparison allowing hinge-bending, swiveling motions.
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- Proteins, 1999, v. 34, n. 2, p. 232, doi. 10.1002/(SICI)1097-0134(19990201)34:2<232::AID-PROT9>3.0.CO;2-9
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- Article
Flexible Docking Allowing Induced Fit in Proteins: Insights From an Open to Closed Conformational Isomers
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- Proteins, 1998, v. 32, n. 2, p. 159
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- Article
Structure-based in silico identification of ubiquitin-binding domains provides insights into the ALIX-V:ubiquitin complex and retrovirus budding.
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- EMBO Journal, 2013, v. 32, n. 4, p. 538, doi. 10.1038/emboj.2013.4
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- Article
Shape complementarity at protein-protein interfaces.
- Published in:
- Biopolymers, 1994, v. 34, n. 7, p. 933, doi. 10.1002/bip.360340711
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- Article
The ARTS web server for aligning RNA tertiary structures.
- Published in:
- Nucleic Acids Research, 2006, v. 34, n. 11, p. w412, doi. 10.1093/nar/gkl312
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- Article
SiteEngines: recognition and comparison of binding sites and protein–protein interfaces.
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- Nucleic Acids Research, 2005, v. 33, n. suppl 2, p. w337, doi. 10.1093/nar/gki482
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- Article
PatchDock and SymmDock: servers for rigid and symmetric docking.
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- Nucleic Acids Research, 2005, v. 33, n. suppl 2, p. w363, doi. 10.1093/nar/gki481
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- Article
BioInfo3D: a suite of tools for structural bioinformatics.
- Published in:
- Nucleic Acids Research, 2004, v. 32, n. suppl 2, p. w503, doi. 10.1093/nar/gkh413
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- Publication type:
- Article
Detection of non-topological motifs in protein structures.
- Published in:
- Protein Engineering, 1996, v. 9, n. 12, p. 1103, doi. 10.1093/protein/9.12.1103
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Molecular surface representations by sparse critical points.
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- Proteins, 1994, v. 18, n. 1, p. 94, doi. 10.1002/prot.340180111
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Surface motifs by a computer vision technique: Searches, detection, and implications for protein-ligand recognition.
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- Proteins, 1993, v. 16, n. 3, p. 278, doi. 10.1002/prot.340160306
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- Article
Discriminating physiological from non‐physiological interfaces in structures of protein complexes: A community‐wide study.
- Published in:
- Proteomics, 2023, v. 23, n. 17, p. 1, doi. 10.1002/pmic.202200323
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- Publication type:
- Article
Spatial chemical conservation of hot spot interactions inprotein-protein complexes.
- Published in:
- BMC Biology, 2007, v. 5, p. 43, doi. 10.1186/1741-7007-5-43
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- Article