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Ten tips for a text-mining-ready article: How to improve automated discoverability and interpretability.
- Published in:
- PLoS Biology, 2020, v. 18, n. 6, p. 1, doi. 10.1371/journal.pbio.3000716
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- Publication type:
- Article
NLM-Chem, a new resource for chemical entity recognition in PubMed full text literature.
- Published in:
- Scientific Data, 2021, v. 8, n. 1, p. 1, doi. 10.1038/s41597-021-00875-1
- By:
- Publication type:
- Article
Text Mining for Translational Bioinformatics.
- Published in:
- BioMed Research International, 2015, v. 2015, p. 1, doi. 10.1155/2015/368264
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- Publication type:
- Article
GNormPlus: An Integrative Approach for Tagging Genes, Gene Families, and Protein Domains.
- Published in:
- 2015
- By:
- Publication type:
- journal article
ezTag: tagging biomedical concepts via interactive learning.
- Published in:
- Nucleic Acids Research, 2018, v. 46, n. W1, p. W523, doi. 10.1093/nar/gky428
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- Publication type:
- Article
LitVar: a semantic search engine for linking genomic variant data in PubMed and PMC.
- Published in:
- Nucleic Acids Research, 2018, v. 46, n. W1, p. W530, doi. 10.1093/nar/gky355
- By:
- Publication type:
- Article
Advancing entity recognition in biomedicine via instruction tuning of large language models.
- Published in:
- Bioinformatics, 2024, v. 40, n. 4, p. 1, doi. 10.1093/bioinformatics/btae163
- By:
- Publication type:
- Article
GNorm2: an improved gene name recognition and normalization system.
- Published in:
- Bioinformatics, 2023, v. 39, n. 10, p. 1, doi. 10.1093/bioinformatics/btad599
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- Publication type:
- Article
AIONER: all-in-one scheme-based biomedical named entity recognition using deep learning.
- Published in:
- Bioinformatics, 2023, v. 39, n. 5, p. 1, doi. 10.1093/bioinformatics/btad310
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- Publication type:
- Article
tmVar 3.0: an improved variant concept recognition and normalization tool.
- Published in:
- Bioinformatics, 2022, v. 38, n. 18, p. 4449, doi. 10.1093/bioinformatics/btac537
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- Publication type:
- Article
Large-Scale Event Extraction from Literature with Multi-Level Gene Normalization.
- Published in:
- PLoS ONE, 2013, v. 8, n. 4, p. 1, doi. 10.1371/journal.pone.0055814
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- Publication type:
- Article
EnzChemRED, a rich enzyme chemistry relation extraction dataset.
- Published in:
- Scientific Data, 2024, v. 11, n. 1, p. 1, doi. 10.1038/s41597-024-03835-7
- By:
- Publication type:
- Article
Assigning species information to corresponding genes by a sequence labeling framework.
- Published in:
- Database: The Journal of Biological Databases & Curation, 2022, v. 2022, p. 1, doi. 10.1093/database/baac090
- By:
- Publication type:
- Article
sequence labeling framework for extracting drug–protein relations from biomedical literature.
- Published in:
- Database: The Journal of Biological Databases & Curation, 2022, v. 2022, p. 1, doi. 10.1093/database/baac058
- By:
- Publication type:
- Article
Using deep learning to identify translational research in genomic medicine beyond bench to bedside.
- Published in:
- Database: The Journal of Biological Databases & Curation, 2019, v. 2019, p. N.PAG, doi. 10.1093/database/baz010
- By:
- Publication type:
- Article
Overview of the BioCreative VI Precision Medicine Track: mining protein interactions and mutations for precision medicine.
- Published in:
- Database: The Journal of Biological Databases & Curation, 2019, v. 2019, p. N.PAG, doi. 10.1093/database/bay147
- By:
- Publication type:
- Article
Overview of the BioCreative VI text-mining services for Kinome Curation Track.
- Published in:
- Database: The Journal of Biological Databases & Curation, 2018, v. 2018, p. 1, doi. 10.1093/database/bay104
- By:
- Publication type:
- Article
Assisting document triage for human kinome curation via machine learning.
- Published in:
- Database: The Journal of Biological Databases & Curation, 2018, v. 2018, p. 1, doi. 10.1093/database/bay091
- By:
- Publication type:
- Article
Prioritizing PubMed articles for the Comparative Toxicogenomic Database utilizing semantic information.
- Published in:
- Database: The Journal of Biological Databases & Curation, 2012, v. 2012, p. 1, doi. 10.1093/database/bas042
- By:
- Publication type:
- Article
Accelerating literature curation with text-mining tools: a case study of using PubTator to curate genes in PubMed abstracts.
- Published in:
- 2012
- By:
- Publication type:
- Case Study
Cross-species gene normalization by species inference.
- Published in:
- BMC Bioinformatics, 2011, v. 12, n. Suppl 8, p. 1, doi. 10.1186/1471-2105-12-S8-S5
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- Publication type:
- Article
The gene normalization task in BioCreative III.
- Published in:
- BMC Bioinformatics, 2011, v. 12, n. Suppl 8, p. 1, doi. 10.1186/1471-2105-12-S8-S2
- By:
- Publication type:
- Article
BioRED: a rich biomedical relation extraction dataset.
- Published in:
- Briefings in Bioinformatics, 2022, v. 23, n. 5, p. 1, doi. 10.1093/bib/bbac282
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- Publication type:
- Article
Recent advances of automated methods for searching and extracting genomic variant information from biomedical literature.
- Published in:
- Briefings in Bioinformatics, 2021, v. 22, n. 3, p. 1, doi. 10.1093/bib/bbaa142
- By:
- Publication type:
- Article
PubTator 3.0: an AI-powered literature resource for unlocking biomedical knowledge.
- Published in:
- Nucleic Acids Research, 2024, v. 52, n. W1, p. W540, doi. 10.1093/nar/gkae235
- By:
- Publication type:
- Article
LitCovid in 2022: an information resource for the COVID-19 literature.
- Published in:
- Nucleic Acids Research, 2023, v. 51, n. D1, p. D1512, doi. 10.1093/nar/gkac1005
- By:
- Publication type:
- Article
PubTator central: automated concept annotation for biomedical full text articles.
- Published in:
- Nucleic Acids Research, 2019, v. 47, n. W1, p. W587, doi. 10.1093/nar/gkz389
- By:
- Publication type:
- Article
BioConceptVec: Creating and evaluating literature-based biomedical concept embeddings on a large scale.
- Published in:
- PLoS Computational Biology, 2020, v. 16, n. 4, p. 1, doi. 10.1371/journal.pcbi.1007617
- By:
- Publication type:
- Article
PMC text mining subset in BioC: about three million full-text articles and growing.
- Published in:
- Bioinformatics, 2019, v. 35, n. 18, p. 3533, doi. 10.1093/bioinformatics/btz070
- By:
- Publication type:
- Article
tmVar 2.0: integrating genomic variant information from literature with dbSNP and ClinVar for precision medicine.
- Published in:
- Bioinformatics, 2018, v. 34, n. 1, p. 80, doi. 10.1093/bioinformatics/btx541
- By:
- Publication type:
- Article
tmVar: a text mining approach for extracting sequence variants in biomedical literature.
- Published in:
- Bioinformatics, 2013, v. 29, n. 11, p. 1433, doi. 10.1093/bioinformatics/btt156
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- Publication type:
- Article
Scaling up data curation using deep learning: An application to literature triage in genomic variation resources.
- Published in:
- PLoS Computational Biology, 2018, v. 14, n. 8, p. 1, doi. 10.1371/journal.pcbi.1006390
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- Publication type:
- Article