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- Title
Gene Expression Risk Scores for COVID-19 Illness Severity.
- Authors
Peterson, Derick R; Baran, Andrea M; Bhattacharya, Soumyaroop; Branche, Angela R; Croft, Daniel P; Corbett, Anthony M; Walsh, Edward E; Falsey, Ann R; Mariani, Thomas J
- Abstract
Background The correlates of coronavirus disease 2019 (COVID-19) illness severity following infection with severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) are incompletely understood. Methods We assessed peripheral blood gene expression in 53 adults with confirmed SARS-CoV-2 infection clinically adjudicated as having mild, moderate, or severe disease. Supervised principal components analysis was used to build a weighted gene expression risk score (WGERS) to discriminate between severe and nonsevere COVID-19. Results Gene expression patterns in participants with mild and moderate illness were similar, but significantly different from severe illness. When comparing severe versus nonsevere illness, we identified >4000 genes differentially expressed (false discovery rate < 0.05). Biological pathways increased in severe COVID-19 were associated with platelet activation and coagulation, and those significantly decreased with T-cell signaling and differentiation. A WGERS based on 18 genes distinguished severe illness in our training cohort (cross-validated receiver operating characteristic-area under the curve [ROC-AUC] = 0.98), and need for intensive care in an independent cohort (ROC-AUC = 0.85). Dichotomizing the WGERS yielded 100% sensitivity and 85% specificity for classifying severe illness in our training cohort, and 84% sensitivity and 74% specificity for defining the need for intensive care in the validation cohort. Conclusions These data suggest that gene expression classifiers may provide clinical utility as predictors of COVID-19 illness severity.
- Subjects
COVID-19; DISEASE risk factors; GENE expression
- Publication
Journal of Infectious Diseases, 2023, Vol 227, Issue 3, p322
- ISSN
0022-1899
- Publication type
Article
- DOI
10.1093/infdis/jiab568