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Microarray background correction: maximum likelihood estimation for the normal-exponential convolution.
- Published in:
- Biostatistics, 2009, v. 10, n. 2, p. 352, doi. 10.1093/biostatistics/kxn042
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- Publication type:
- Article
Microarray background correction: maximum likelihood estimation for the normal-exponential convolution.
- Published in:
- 2009
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- Publication type:
- journal article
SMCHD1 has separable roles in chromatin architecture and gene silencing that could be targeted in disease.
- Published in:
- Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-40992-6
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- Publication type:
- Article
Hookworms dynamically respond to loss of Type 2 immune pressure.
- Published in:
- PLoS Pathogens, 2023, v. 19, n. 12, p. 1, doi. 10.1371/journal.ppat.1011797
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- Publication type:
- Article
Dashboard-style interactive plots for RNA-seq analysis are R Markdown ready with Glimma 2.0.
- Published in:
- NAR Genomics & Bioinformatics, 2021, v. 3, n. 4, p. 1, doi. 10.1093/nargab/lqab116
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- Publication type:
- Article
Smchd1 is a maternal effect gene required for genomic imprinting.
- Published in:
- eLife, 2020, p. 1, doi. 10.7554/eLife.55529
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- Publication type:
- Article
Identification and control for the effects of bioinformatic globin depletion on human RNA-seq differential expression analysis.
- Published in:
- Scientific Reports, 2023, v. 13, n. 1, p. 1, doi. 10.1038/s41598-023-28218-7
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- Publication type:
- Article
RNA-seq mixology: designing realistic control experiments to compare protocols and analysis methods.
- Published in:
- Nucleic Acids Research, 2017, v. 45, n. 5, p. 1, doi. 10.1093/nar/gkw1063
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- Publication type:
- Article
Why weight? Modelling sample and observational level variability improves power in RNA-seq analyses.
- Published in:
- Nucleic Acids Research, 2015, v. 43, n. 15, p. 1, doi. 10.1093/nar/gkv412
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- Publication type:
- Article
limma powers differential expression analyses for RNA-sequencing and microarray studies.
- Published in:
- Nucleic Acids Research, 2015, v. 43, n. 7, p. e47, doi. 10.1093/nar/gkv007
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- Publication type:
- Article
A re-annotation pipeline for Illumina BeadArrays: improving the interpretation of gene expression data.
- Published in:
- Nucleic Acids Research, 2010, v. 38, n. 3, p. e17, doi. 10.1093/nar/gkp942
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- Publication type:
- Article
BAF complex-mediated chromatin relaxation is required for establishment of X chromosome inactivation.
- Published in:
- Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-29333-1
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- Publication type:
- Article
Loss of PUMA ( BBC3) does not prevent thrombocytopenia caused by the loss of BCL- XL ( BCL2L1).
- Published in:
- British Journal of Haematology, 2016, v. 174, n. 6, p. 962, doi. 10.1111/bjh.14155
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- Publication type:
- Article
Flexiplex: a versatile demultiplexer and search tool for omics data.
- Published in:
- Bioinformatics, 2024, v. 40, n. 3, p. 1, doi. 10.1093/bioinformatics/btae102
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- Publication type:
- Article
long-read-tools.org: an interactive catalogue of analysis methods for long-read sequencing data.
- Published in:
- GigaScience, 2021, v. 10, n. 2, p. 1, doi. 10.1093/gigascience/giab003
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- Publication type:
- Article
Benchmarking UMI-based single-cell RNA-seq preprocessing workflows.
- Published in:
- Genome Biology, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s13059-021-02552-3
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- Publication type:
- Article
Gene Network Disruptions and Neurogenesis Defects in the Adult Ts1Cje Mouse Model of Down Syndrome.
- Published in:
- PLoS ONE, 2010, v. 5, n. 7, p. 1, doi. 10.1371/journal.pone.0011561
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- Publication type:
- Article
Myocardial Gene Expression Associated with Genetic Cardiac Hypertrophy in the Absence of Hypertension.
- Published in:
- Hypertension Research, 2008, v. 31, n. 5, p. 941, doi. 10.1291/hypres.31.941
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- Publication type:
- Article
Distinct initiating events underpin the immune and metabolic heterogeneity of KRAS-mutant lung adenocarcinoma.
- Published in:
- Nature Communications, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41467-019-12164-y
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- Publication type:
- Article
Integrative analysis of RUNX1 downstream pathways and target genes.
- Published in:
- BMC Genomics, 2008, v. 9, p. 1, doi. 10.1186/1471-2164-9-363
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- Publication type:
- Article
KRLMM: an adaptive genotype calling method for common and low frequency variants.
- Published in:
- BMC Bioinformatics, 2014, v. 15, n. 1, p. 1, doi. 10.1186/1471-2105-15-158
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- Publication type:
- Article
Comparing genotyping algorithms for Illumina's Infinium whole-genome SNP BeadChips.
- Published in:
- BMC Bioinformatics, 2011, v. 12, n. 1, p. 68, doi. 10.1186/1471-2105-12-68
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- Publication type:
- Article
Data analysis issues for allele-specific expression using Illumina's GoldenGate assay.
- Published in:
- BMC Bioinformatics, 2010, v. 11, p. 280, doi. 10.1186/1471-2105-11-280
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- Publication type:
- Article
Statistical issues in the analysis of Illumina data.
- Published in:
- BMC Bioinformatics, 2008, v. 9, p. 1, doi. 10.1186/1471-2105-9-85
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- Publication type:
- Article
NanoMethViz: An R/Bioconductor package for visualizing long-read methylation data.
- Published in:
- PLoS Computational Biology, 2021, v. 17, n. 10, p. 1, doi. 10.1371/journal.pcbi.1009524
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- Publication type:
- Article
Setdb1-mediated H3K9 methylation is enriched on the inactive X and plays a role in its epigenetic silencing.
- Published in:
- Epigenetics & Chromatin, 2016, v. 9, p. 1, doi. 10.1186/s13072-016-0064-6
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- Publication type:
- Article
The impact of influenza pulmonary infection and inflammation on vagal bronchopulmonary sensory neurons.
- Published in:
- FASEB Journal, 2021, v. 35, n. 3, p. 1, doi. 10.1096/fj.202001509R
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- Publication type:
- Article
High-throughput analysis of candidate imprinted genes and allele-specific gene expression in the human term placenta.
- Published in:
- BMC Genetics, 2010, v. 11, p. 25, doi. 10.1186/1471-2156-11-25
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- Publication type:
- Article
BeadArray Expression Analysis Using Bioconductor.
- Published in:
- PLoS Computational Biology, 2011, v. 7, n. 12, p. 1, doi. 10.1371/journal.pcbi.1002276
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- Publication type:
- Article
CD36 family members are TCR-independent ligands for CD1 antigen–presenting molecules.
- Published in:
- Science Immunology, 2021, v. 6, n. 60, p. 1, doi. 10.1126/sciimmunol.abg4176
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- Publication type:
- Article
Modeling group heteroscedasticity in single-cell RNA-seq pseudo-bulk data.
- Published in:
- Genome Biology, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s13059-023-02949-2
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- Publication type:
- Article
Publisher Correction: Modeling group heteroscedasticity in single-cell RNA-seq pseudo-bulk data.
- Published in:
- 2023
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- Publication type:
- Correction Notice
Identification of a Siglec‐F+ granulocyte‐macrophage progenitor.
- Published in:
- Journal of Leukocyte Biology, 2018, v. 104, n. 1, p. 123, doi. 10.1002/JLB.1MA1217-475R
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- Publication type:
- Article
High-LET Radiation Increases Tumor Progression in a K-Ras-Driven Model of Lung Adenocarcinoma.
- Published in:
- Radiation Research, 2017, v. 188, n. 5, p. 562, doi. 10.1667/RR14794.1
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- Publication type:
- Article
A comparison of background correction methods for two-colour microarrays.
- Published in:
- Bioinformatics, 2007, v. 23, n. 20, p. 2700, doi. 10.1093/bioinformatics/btm412
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- Publication type:
- Article
beadarray: R classes and methods for Illumina bead-based data.
- Published in:
- Bioinformatics, 2007, v. 23, n. 16, p. 2183, doi. 10.1093/bioinformatics/btm311
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- Publication type:
- Article
Dividing out quantification uncertainty allows efficient assessment of differential transcript expression with edgeR.
- Published in:
- Nucleic Acids Research, 2024, v. 52, n. 3, p. e13, doi. 10.1093/nar/gkad1167
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- Publication type:
- Article
Actinobacillus pleuropneumoniae encodes multiple phase-variable DNA methyltransferases that control distinct phasevarions.
- Published in:
- Nucleic Acids Research, 2023, v. 51, n. 7, p. 3240, doi. 10.1093/nar/gkad091
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- Publication type:
- Article
Using long-read sequencing to detect imprinted DNA methylation.
- Published in:
- Nucleic Acids Research, 2019, v. 47, n. 8, p. e46, doi. 10.1093/nar/gkz107
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- Publication type:
- Article
VEGF-dependent testicular vascularisation involves MEK1/2 signalling and the essential angiogenesis factors, SOX7 and SOX17.
- Published in:
- BMC Biology, 2024, v. 22, n. 1, p. 1, doi. 10.1186/s12915-024-02003-y
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- Publication type:
- Article
FGF-independent MEK1/2 signalling in the developing foetal testis is essential for male germline differentiation in mice.
- Published in:
- BMC Biology, 2023, v. 21, n. 1, p. 1, doi. 10.1186/s12915-023-01777-x
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- Publication type:
- Article
Modifier Effects between Regulatory and Protein-Coding Variation.
- Published in:
- PLoS Genetics, 2008, v. 4, n. 10, p. 1, doi. 10.1371/journal.pgen.1000244
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- Publication type:
- Article
Modulation of Vagal Sensory Neurons via High Mobility Group Box-1 and Receptor for Advanced Glycation End Products: Implications for Respiratory Viral Infections.
- Published in:
- Frontiers in Physiology, 2021, v. 12, p. 1, doi. 10.3389/fphys.2021.744812
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- Publication type:
- Article
Opportunities and challenges in long-read sequencing data analysis.
- Published in:
- Genome Biology, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s13059-020-1935-5
- By:
- Publication type:
- Article
Maternal SMCHD1 controls both imprinted Xist expression and imprinted X chromosome inactivation.
- Published in:
- Epigenetics & Chromatin, 2022, v. 15, n. 1, p. 1, doi. 10.1186/s13072-022-00458-3
- By:
- Publication type:
- Article
Maternal SMCHD1 controls both imprinted Xist expression and imprinted X chromosome inactivation.
- Published in:
- Epigenetics & Chromatin, 2022, v. 15, n. 1, p. 1, doi. 10.1186/s13072-022-00458-3
- By:
- Publication type:
- Article
A pooled shRNA screen for regulators of primary mammary stem and progenitor cells identifies roles for Asap1 and Prox1.
- Published in:
- BMC Cancer, 2015, v. 15, n. 1, p. 1, doi. 10.1186/s12885-015-1187-z
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- Publication type:
- Article
A pooled shRNA screen for regulators of primary mammary stem and progenitor cells identifies roles for Asap1 and Prox1.
- Published in:
- 2015
- By:
- Publication type:
- journal article
Transcriptional Profiling of Individual Airway Projecting Vagal Sensory Neurons.
- Published in:
- Molecular Neurobiology, 2020, v. 57, n. 2, p. 949, doi. 10.1007/s12035-019-01782-8
- By:
- Publication type:
- Article
CellBench: R/Bioconductor software for comparing single-cell RNA-seq analysis methods.
- Published in:
- Bioinformatics, 2020, v. 36, n. 7, p. 2288, doi. 10.1093/bioinformatics/btz889
- By:
- Publication type:
- Article