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PICNIC: an algorithm to predict absolute allelic copy number variation with microarray cancer data.
Published in:
Biostatistics, 2010, v. 11, n. 1, p. 164, doi. 10.1093/biostatistics/kxp045
By:
- Greenman, Chris D.;
- Bignell, Graham;
- Butler, Adam;
- Edkins, Sarah;
- Hinton, Jon;
- Beare, Dave;
- Swamy, Sajani;
- Santarius, Thomas;
- Chen, Lina;
- Widaa, Sara;
- Futreal, P. Andy;
- Stratton, Michael R.
Publication type:
Article
Germline Fitness-Based Scoring of Cancer Mutations.
Published in:
Genetics, 2011, v. 188, n. 2, p. 383, doi. 10.1534/genetics.111.127480
By:
- Fischer, Andrej;
- Greenman, Chris;
- Mustonen, Ville
Publication type:
Article
Statistical Analysis of Pathogenicity of Somatic Mutations in Cancer.
Published in:
Genetics, 2006, v. 173, n. 4, p. 2187, doi. 10.1534/genetics.105.044677
By:
- Greenman, Chris;
- Wooster, Richard;
- Futreal, P. Andrew;
- Stratton, Michael R.;
- Easton, Douglas F.
Publication type:
Article
Tandem duplication of chromosomal segments is common in ovarian and breast cancer genomes.
Published in:
Journal of Pathology, 2012, v. 227, n. 4, p. 446, doi. 10.1002/path.4042
By:
- McBride, David J;
- Etemadmoghadam, Dariush;
- Cooke, Susanna L;
- Alsop, Kathryn;
- George, Joshy;
- Butler, Adam;
- Cho, Juok;
- Galappaththige, Danushka;
- Greenman, Chris;
- Howarth, Karen D;
- Lau, King W;
- Ng, Charlotte K;
- Raine, Keiran;
- Teague, Jon;
- Wedge, David C;
- Cancer Study Group, Australian Ovarian;
- Caubit, Xavier;
- Stratton, Michael R;
- Brenton, James D;
- Campbell, Peter J
Publication type:
Article
Somatic mutations of the histone H3K27 demethylase gene UTX in human cancer.
Published in:
Nature Genetics, 2009, v. 41, n. 5, p. 521, doi. 10.1038/ng.349
By:
- van Haaften, Gijs;
- Dalgliesh, Gillian L.;
- Davies, Helen;
- Chen, Lina;
- Bignell, Graham;
- Greenman, Chris;
- Edkins, Sarah;
- Hardy, Claire;
- O'Meara, Sarah;
- Teague, Jon;
- Butler, Adam;
- Hinton, Jonathan;
- Latimer, Calli;
- Andrews, Jenny;
- Barthorpe, Syd;
- Beare, Dave;
- Buck, Gemma;
- Campbell, Peter J.;
- Cole, Jennifer;
- Forbes, Simon
Publication type:
Article
A systematic, large-scale resequencing screen of X-chromosome coding exons in mental retardation.
Published in:
Nature Genetics, 2009, v. 41, n. 5, p. 535, doi. 10.1038/ng.367
By:
- Tarpey, Patrick S.;
- Smith, Raffaella;
- Pleasance, Erin;
- Whibley, Annabel;
- Edkins, Sarah;
- Hardy, Claire;
- O'Meara, Sarah;
- Latimer, Calli;
- Dicks, Ed;
- Menzies, Andrew;
- Stephens, Phil;
- Blow, Matt;
- Greenman, Chris;
- Yali Xue;
- Tyler-Smith, Chris;
- Thompson, Deborah;
- Gray, Kristian;
- Andrews, Jenny;
- Barthorpe, Syd;
- Buck, Gemma
Publication type:
Article
A screen of the complete protein kinase gene family identifies diverse patterns of somatic mutations in human breast cancer.
Published in:
Nature Genetics, 2005, v. 37, n. 6, p. 590, doi. 10.1038/ng1571
By:
- Stephens, Philip;
- Edkins, Sarah;
- Davies, Helen;
- Greenman, Chris;
- Cox, Charles;
- Hunter, Chris;
- Bignell, Graham;
- Teague, Jon;
- Smith, Raffaella;
- Stevens, Claire;
- O'Meara, Sarah;
- Parker, Adrian;
- Tarpey, Patrick;
- Avis, Tim;
- Barthorpe, Andy;
- Brackenbury, Lisa;
- Buck, Gemma;
- Butler, Adam;
- Clements, Jody;
- Cole, Jennifer
Publication type:
Article
The Relative Timing of Mutations in a Breast Cancer Genome.
Published in:
PLoS ONE, 2013, v. 8, n. 6, p. 1, doi. 10.1371/journal.pone.0064991
By:
- Newman, Scott;
- Howarth, Karen D.;
- Greenman, Chris D.;
- Bignell, Graham R.;
- Tavaré, Simon;
- Edwards, Paul A. W.
Publication type:
Article
Exome sequencing identifies frequent mutation of the SWI/SNF complex gene PBRM1 in renal carcinoma.
Published in:
Nature, 2011, v. 469, n. 7331, p. 539, doi. 10.1038/nature09639
By:
- Varela, Ignacio;
- Tarpey, Patrick;
- Raine, Keiran;
- Huang, Dachuan;
- Ong, Choon Kiat;
- Stephens, Philip;
- Davies, Helen;
- Jones, David;
- Meng-Lay Lin;
- Teague, Jon;
- Bignell, Graham;
- Butler, Adam;
- Cho, Juok;
- Dalgliesh, Gillian L.;
- Galappaththige, Danushka;
- Greenman, Chris;
- Hardy, Claire;
- Mingming Jia;
- Latimer, Calli;
- King Wai Lau
Publication type:
Article
Signatures of mutation and selection in the cancer genome.
Published in:
Nature, 2010, v. 463, n. 7283, p. 893, doi. 10.1038/nature08768
By:
- Bignell, Graham R.;
- Greenman, Chris D.;
- Davies, Helen;
- Butler, Adam P.;
- Edkins, Sarah;
- Andrews, Jenny M.;
- Buck, Gemma;
- Chen, Lina;
- Beare, David;
- Latimer, Calli;
- Widaa, Sara;
- Hinton, Jonathon;
- Fahey, Ciara;
- Fu, Beiyuan;
- Swamy, Sajani;
- Dalgliesh, Gillian L.;
- Teh, Bin T.;
- Deloukas, Panos;
- Yang, Fengtang;
- Campbell, Peter J.
Publication type:
Article
Systematic sequencing of renal carcinoma reveals inactivation of histone modifying genes.
Published in:
Nature, 2010, v. 463, n. 7279, p. 360, doi. 10.1038/nature08672
By:
- Dalgliesh, Gillian L.;
- Furge, Kyle;
- Greenman, Chris;
- Chen, Lina;
- Bignell, Graham;
- Butler, Adam;
- Davies, Helen;
- Edkins, Sarah;
- Hardy, Claire;
- Latimer, Calli;
- Teague, Jon;
- Andrews, Jenny;
- Barthorpe, Syd;
- Beare, Dave;
- Buck, Gemma;
- Campbell, Peter J.;
- Forbes, Simon;
- Mingming Jia;
- Jones, David;
- Knott, Henry
Publication type:
Article
A small-cell lung cancer genome with complex signatures of tobacco exposure.
Published in:
Nature, 2010, v. 463, n. 7278, p. 184, doi. 10.1038/nature08629
By:
- Pleasance, Erin D.;
- Cheetham, R. Keira;
- Stephens, Philip J.;
- McBride, David J.;
- Humphray, Sean J.;
- Greenman, Chris D.;
- Varela, Ignacio;
- Meng-Lay Lin;
- Ordóñez, Gonzalo R.;
- Bignell, Graham R.;
- Kai Ye;
- Alipaz, Julie;
- Bauer, Markus J.;
- Beare, David;
- Butler, Adam;
- Carter, Richard J.;
- Chen, Lina;
- Cox, Anthony J.;
- Edkins, Sarah;
- Kokko-Gonzales, Paula I.
Publication type:
Article
A comprehensive catalogue of somatic mutations from a human cancer genome.
Published in:
Nature, 2010, v. 463, n. 7278, p. 191, doi. 10.1038/nature08658
By:
- Pleasance, Erin D.;
- Cheetham, R. Keira;
- Stephens, Philip J.;
- McBride, David J.;
- Humphray, Sean J.;
- Greenman, Chris D.;
- Varela, Ignacio;
- Lin, Meng-Lay;
- Ordóñez, Gonzalo R.;
- Bignell, Graham R.;
- Ye, Kai;
- Alipaz, Julie;
- Bauer, Markus J.;
- Beare, David;
- Butler, Adam;
- Carter, Richard J.;
- Chen, Lina;
- Cox, Anthony J.;
- Edkins, Sarah;
- Kokko-Gonzales, Paula I.
Publication type:
Article
Complex landscapes of somatic rearrangement in human breast cancer genomes.
Published in:
Nature, 2009, v. 462, n. 7276, p. 1005, doi. 10.1038/nature08645
By:
- Stephens, Philip J.;
- McBride, David J.;
- Meng-Lay Lin;
- Varela, Ignacio;
- Pleasance, Erin D.;
- Simpson, Jared T.;
- Stebbings, Lucy A.;
- Leroy, Catherine;
- Edkins, Sarah;
- Mudie, Laura J.;
- Greenman, Chris D.;
- Mingming Jia;
- Latimer, Calli;
- Teague, Jon W.;
- King Wai Lau;
- Burton, John;
- Quail, Michael A.;
- Swerdlow, Harold;
- Churcher, Carol;
- Natrajan, Rachael
Publication type:
Article
Inferring the Clonal Structure of Viral Populations from Time Series Sequencing.
Published in:
PLoS Computational Biology, 2015, v. 11, n. 11, p. 1, doi. 10.1371/journal.pcbi.1004344
By:
- Chedom, Donatien F.;
- Murcia, Pablo R.;
- Greenman, Chris D.
Publication type:
Article
Computational Cancer Biology: An Evolutionary Perspective.
Published in:
PLoS Computational Biology, 2016, v. 12, n. 2, p. 1, doi. 10.1371/journal.pcbi.1004717
By:
- Beerenwinkel, Niko;
- Greenman, Chris D.;
- Lagergren, Jens
Publication type:
Article
GLO1-A novel amplified gene in human cancer.
Published in:
Genes, Chromosomes & Cancer, 2010, v. 49, n. 8, p. 711, doi. 10.1002/gcc.20784
By:
- Santarius, Thomas;
- Bignell, Graham R.;
- Greenman, Chris D.;
- Widaa, Sara;
- Chen, Lina;
- Mahoney, Claire L.;
- Butler, Adam;
- Edkins, Sarah;
- Waris, Sahar;
- Thornalley, Paul J.;
- Futreal, P. Andrew;
- Stratton, Michael R.
Publication type:
Article
Sequence analysis of the protein kinase gene family in human testicular germ‐cell tumors of adolescents and adults.
Published in:
Genes, Chromosomes & Cancer, 2006, v. 45, n. 1, p. 42, doi. 10.1002/gcc.20265
By:
- Graham Bignell;
- Raffaella Smith;
- Chris Hunter;
- Philip Stephens;
- Helen Davies;
- Chris Greenman;
- Jon Teague;
- Adam Butler;
- Sarah Edkins;
- Claire Stevens;
- Sarah O'Meara;
- Adrian Parker;
- Tim Avis;
- Syd Barthorpe;
- Lisa Brackenbury;
- Gemma Buck;
- Jody Clements;
- Jennifer Cole;
- Ed Dicks;
- Ken Edwards
Publication type:
Article
The landscape of cancer genes and mutational processes in breast cancer.
Published in:
Nature, 2012, v. 486, n. 7403, p. 400, doi. 10.1038/nature11017
By:
- Stephens, Philip J.;
- Tarpey, Patrick S.;
- Davies, Helen;
- Van Loo, Peter;
- Greenman, Chris;
- Wedge, David C.;
- Nik-Zainal, Serena;
- Martin, Sancha;
- Varela, Ignacio;
- Bignell, Graham R.;
- Yates, Lucy R.;
- Papaemmanuil, Elli;
- Beare, David;
- Butler, Adam;
- Cheverton, Angela;
- Gamble, John;
- Hinton, Jonathan;
- Jia, Mingming;
- Jayakumar, Alagu;
- Jones, David
Publication type:
Article
Corrigendum: Exome sequencing identifies frequent mutation of the SWI/SNF complex gene PBRM1 in renal carcinoma.
Published in:
2012
By:
- Varela, Ignacio;
- Tarpey, Patrick;
- Raine, Keiran;
- Huang, Dachuan;
- Ong, Choon Kiat;
- Stephens, Philip;
- Davies, Helen;
- Jones, David;
- Lin, Meng-Lay;
- Teague, Jon;
- Bignell, Graham;
- Butler, Adam;
- Cho, Juok;
- Dalgliesh, Gillian L.;
- Galappaththige, Danushka;
- Greenman, Chris;
- Hardy, Claire;
- Jia, Mingming;
- Latimer, Calli;
- Lau, KingWai
Publication type:
Erratum
Systematic identification of genomic markers of drug sensitivity in cancer cells.
Published in:
Nature, 2012, v. 483, n. 7391, p. 570, doi. 10.1038/nature11005
By:
- Garnett, Mathew J.;
- Edelman, Elena J.;
- Heidorn, Sonja J.;
- Greenman, Chris D.;
- Dastur, Anahita;
- Lau, King Wai;
- Greninger, Patricia;
- Thompson, I. Richard;
- Luo, Xi;
- Soares, Jorge;
- Liu, Qingsong;
- Iorio, Francesco;
- Surdez, Didier;
- Chen, Li;
- Milano, Randy J.;
- Bignell, Graham R.;
- Tam, Ah T.;
- Davies, Helen;
- Stevenson, Jesse A.;
- Barthorpe, Syd
Publication type:
Article
Model-Integrated Estimation of Normal Tissue Contamination for Cancer SNP Allelic Copy Number Data.
Published in:
Cancer Informatics, 2011, n. 10, p. 159, doi. 10.4137/CIN.S6873
By:
- Stjernqvist, Susann;
- Rydén, Tobias;
- Greenman, Chris D.
Publication type:
Article
Model-Integrated Estimation of Normal Tissue Contamination for Cancer SNP Allelic Copy Number Data.
Published in:
Cancer Informatics, 2011, n. 9, p. 159, doi. 10.4137/CIN.S6873
By:
- Stjernqvist, Susann;
- Rydén, Tobias;
- Greenman, Chris D.
Publication type:
Article
Time Series Path Integral Expansions for Stochastic Processes.
Published in:
Journal of Statistical Physics, 2022, v. 187, n. 3, p. 1, doi. 10.1007/s10955-022-02912-8
By:
- Greenman, Chris D.
Publication type:
Article
A Hierarchical Kinetic Theory of Birth, Death and Fission in Age-Structured Interacting Populations.
Published in:
Journal of Statistical Physics, 2016, v. 164, n. 1, p. 49, doi. 10.1007/s10955-016-1524-x
By:
- Chou, Tom;
- Greenman, Chris
Publication type:
Article

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