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Pegylated IFN-α regulates hepatic gene expression through transient Jak/STAT activation.
- Published in:
- Journal of Clinical Investigation, 2014, v. 124, n. 4, p. 1568, doi. 10.1172/JCI70408
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- Publication type:
- Article
Whole genome phylogenies reflect the distributions of recombination rates for many bacterial species.
- Published in:
- eLife, 2021, p. 1, doi. 10.7554/eLife.65366
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- Publication type:
- Article
Expression noise facilitates the evolution of gene regulation.
- Published in:
- eLife, 2015, p. 1, doi. 10.7554/eLife.05856
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- Publication type:
- Article
Embryonic stem cell-specific microRNAs contribute to pluripotency by inhibiting regulators of multiple differentiation pathways.
- Published in:
- Nucleic Acids Research, 2014, v. 42, n. 14, p. 9313, doi. 10.1093/nar/gku544
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- Publication type:
- Article
Fifteen years SIB Swiss Institute of Bioinformatics: life science databases, tools and support.
- Published in:
- Nucleic Acids Research, 2014, v. 42, n. W1, p. W436, doi. 10.1093/nar/gku380
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- Publication type:
- Article
Computational modeling identifies key gene regulatory interactions underlying phenobarbital-mediated tumor promotion.
- Published in:
- Nucleic Acids Research, 2014, v. 42, n. 7, p. 4180, doi. 10.1093/nar/gkt1415
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- Publication type:
- Article
SwissRegulon, a database of genome-wide annotations of regulatory sites: recent updates.
- Published in:
- Nucleic Acids Research, 2013, v. 41, p. D214, doi. 10.1093/nar/gks1145
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- Publication type:
- Article
Update of the FANTOM web resource: from mammalian transcriptional landscape to its dynamic regulation.
- Published in:
- Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D856, doi. 10.1093/nar/gkq1112
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- Publication type:
- Article
SwissRegulon: a database of genome-wide annotations of regulatory sites.
- Published in:
- Nucleic Acids Research, 2007, v. 35, p. d127, doi. 10.1093/nar/gkl857
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- Publication type:
- Article
Bayesian inference of gene expression states from single-cell RNA-seq data.
- Published in:
- Nature Biotechnology, 2021, v. 39, n. 8, p. 1008, doi. 10.1038/s41587-021-00875-x
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- Publication type:
- Article
Tyrosine phosphatase SHP2 promotes breast cancer progression and maintains tumor-initiating cells via activation of key transcription factors and a positive feedback signaling loop.
- Published in:
- Nature Medicine, 2012, v. 18, n. 4, p. 529, doi. 10.1038/nm.2645
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- Publication type:
- Article
Temporal and sequential transcriptional dynamics define lineage shifts in corticogenesis.
- Published in:
- EMBO Journal, 2022, v. 41, n. 24, p. 1, doi. 10.15252/embj.2022111132
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- Publication type:
- Article
The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line.
- Published in:
- Nature Genetics, 2009, v. 41, n. 5, p. 553, doi. 10.1038/ng.375
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- Publication type:
- Article
A biophysical miRNA-mRNA interaction model infers canonical and noncanonical targets.
- Published in:
- Nature Methods, 2013, v. 10, n. 3, p. 253, doi. 10.1038/nmeth.2341
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- Publication type:
- Article
Klf4 Is a Transcriptional Regulator of Genes Critical for EMT, Including Jnk1 (<i>Mapk8</i>).
- Published in:
- PLoS ONE, 2013, v. 8, n. 2, p. 1, doi. 10.1371/journal.pone.0057329
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- Publication type:
- Article
Transcription Factor Binding Site Positioning in Yeast: Proximal Promoter Motifs Characterize TATA-Less Promoters.
- Published in:
- PLoS ONE, 2011, v. 6, n. 9, p. 1, doi. 10.1371/journal.pone.0024279
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- Publication type:
- Article
Transformation fingerprint: induced STAT3-C, v-Src and Ha-Ras cause small initial changes but similar established profiles in mRNA.
- Published in:
- Oncogene, 2004, v. 23, n. 52, p. 8455, doi. 10.1038/sj.onc.1207803
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- Publication type:
- Article
Co-expression of FBN1 with mesenchyme-specific genes in mouse cell lines: implications for phenotypic variability in Marfan syndrome.
- Published in:
- European Journal of Human Genetics, 2010, v. 18, n. 11, p. 1209, doi. 10.1038/ejhg.2010.91
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- Publication type:
- Article
Inference of miRNA targets using evolutionary conservation and pathway analysis.
- Published in:
- 2007
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- Publication type:
- Erratum
Automated Reconstruction of Whole-Genome Phylogenies from Short-Sequence Reads.
- Published in:
- Molecular Biology & Evolution, 2014, v. 31, n. 5, p. 1077, doi. 10.1093/molbev/msu088
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- Publication type:
- Article
Tead transcription factors differentially regulate cortical development.
- Published in:
- Scientific Reports, 2020, v. 10, n. 1, p. 1, doi. 10.1038/s41598-020-61490-5
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- Publication type:
- Article
Parity induces differentiation and reduces Wnt/Notch signaling ratio and proliferation potential of basal stem/progenitor cells isolated from mouse mammary epithelium.
- Published in:
- Breast Cancer Research, 2013, v. 15, n. 2, p. 1, doi. 10.1186/bcr3419
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- Publication type:
- Article
Parity induces differentiation and reduces Wnt/Notch signaling ratio and proliferation potential of basal stem/progenitor cells isolated from mouse mammary epithelium.
- Published in:
- 2013
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- Publication type:
- journal article
Using fluorescence flow cytometry data for single-cell gene expression analysis in bacteria.
- Published in:
- PLoS ONE, 2020, v. 15, n. 10, p. 1, doi. 10.1371/journal.pone.0240233
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- Publication type:
- Article
Timescales and bottlenecks in miRNA‐dependent gene regulation.
- Published in:
- Molecular Systems Biology, 2013, v. 9, n. 1, p. 1, doi. 10.1038/msb.2013.68
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- Publication type:
- Article
Chromatin measurements reveal contributions of synthesis and decay to steady‐state mRNA levels.
- Published in:
- Molecular Systems Biology, 2012, v. 8, n. 1, p. 1, doi. 10.1038/msb.2012.23
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- Publication type:
- Article
Accurate prediction of protein–protein interactions from sequence alignments using a Bayesian method.
- Published in:
- Molecular Systems Biology, 2008, v. 4, n. 1, p. 1, doi. 10.1038/msb4100203
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- Publication type:
- Article
Nucleosome Free Regions in Yeast Promoters Result from Competitive Binding of Transcription Factors That Interact with Chromatin Modifiers.
- Published in:
- PLoS Computational Biology, 2013, v. 9, n. 8, p. 1, doi. 10.1371/journal.pcbi.1003181
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- Publication type:
- Article
Disentangling Direct from Indirect Co-Evolution of Residues in Protein Alignments.
- Published in:
- PLoS Computational Biology, 2010, v. 6, n. 1, p. 1, doi. 10.1371/journal.pcbi.1000633
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- Publication type:
- Article
PhyloGibbs: A Gibbs Sampling Motif Finder That Incorporates Phylogeny.
- Published in:
- PLoS Computational Biology, 2005, v. 1, n. 7, p. e67, doi. 10.1371/journal.pcbi.0010067
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- Publication type:
- Article
Genome-wide gene expression noise in Escherichia coli is condition-dependent and determined by propagation of noise through the regulatory network.
- Published in:
- PLoS Biology, 2021, v. 19, n. 12, p. 1, doi. 10.1371/journal.pbio.3001491
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- Publication type:
- Article
Subpopulations of sensorless bacteria drive fitness in fluctuating environments.
- Published in:
- PLoS Biology, 2020, v. 18, n. 12, p. 1, doi. 10.1371/journal.pbio.3000952
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- Publication type:
- Article
Global 3′ UTR shortening has a limited effect on protein abundance in proliferating T cells.
- Published in:
- Nature Communications, 2014, v. 5, n. 11, p. 5465, doi. 10.1038/ncomms6465
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- Publication type:
- Article
Improved analysis of (e)CLIP data with RCRUNCH yields a compendium of RNA-binding protein binding sites and motifs.
- Published in:
- Genome Biology, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s13059-023-02913-0
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- Publication type:
- Article
Inferring Contacting Residues within and between Proteins: What Do the Probabilities Mean?
- Published in:
- PLoS Computational Biology, 2016, v. 12, n. 5, p. 1, doi. 10.1371/journal.pcbi.1004726
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- Publication type:
- Article
Monitoring single-cell gene regulation under dynamically controllable conditions with integrated microfluidics and software.
- Published in:
- Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-017-02505-0
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- Publication type:
- Article
Discovery of physiological and cancer-related regulators of 3′ UTR processing with KAPAC.
- Published in:
- Genome Biology, 2018, v. 19, p. 1, doi. 10.1186/s13059-018-1415-3
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- Publication type:
- Article
Authors' Reply.
- Published in:
- 2006
- By:
- Publication type:
- Letter
A Simple Physical Model Predicts Small<br /> Exon Length Variations.
- Published in:
- PLoS Genetics, 2006, v. 2, n. 4, p. e45, doi. 10.1371/journal.pgen.0020045
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- Publication type:
- Article
SPA: A Probabilistic Algorithm for Spliced<br /> Alignment.
- Published in:
- PLoS Genetics, 2006, v. 2, n. 4, p. e24, doi. 10.1371/journal.pgen.0020024
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- Publication type:
- Article
Identifying cell states in single-cell RNA-seq data at statistically maximal resolution.
- Published in:
- PLoS Computational Biology, 2024, v. 20, n. 7, p. 1, doi. 10.1371/journal.pcbi.1012224
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- Publication type:
- Article
MotEvo: integrated Bayesian probabilistic methods for inferring regulatory sites and motifs on multiple alignments of DNA sequences.
- Published in:
- Bioinformatics, 2012, v. 28, n. 4, p. 487, doi. 10.1093/bioinformatics/btr695
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- Publication type:
- Article
Computational Analysis of Full-length cDNAs Reveals Frequent Coupling Between Transcriptional and Splicing Programs.
- Published in:
- DNA Research, 2008, v. 15, n. 2, p. 63, doi. 10.1093/dnares/dsm036
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- Publication type:
- Article
Adipose Tissue MicroRNAs as Regulators of CCL2 Production in Human Obesity.
- Published in:
- Diabetes, 2012, v. 61, n. 8, p. 1986, doi. 10.2337/db11-1508
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- Publication type:
- Article
Quantitative analysis of persister fractions suggests different mechanisms of formation among environmental isolates of E. coli.
- Published in:
- BMC Microbiology, 2013, v. 13, n. 1, p. 1, doi. 10.1186/1471-2180-13-25
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- Publication type:
- Article
Automated incorporation of pairwise dependency in transcription factor binding site prediction using dinucleotide weight tensors.
- Published in:
- PLoS Computational Biology, 2017, v. 13, n. 7, p. 1, doi. 10.1371/journal.pcbi.1005176
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- Publication type:
- Article