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Viral immunity: Basic mechanisms and therapeutic applications—a Keystone Symposia report.
Published in:
Annals of the New York Academy of Sciences, 2023, v. 1521, n. 1, p. 32, doi. 10.1111/nyas.14960
By:
- Cable, Jennifer;
- Balachandran, Siddharth;
- Daley‐Bauer, Lisa P.;
- Rustagi, Arjun;
- Antony, Ferrin;
- Frere, Justin J.;
- Strampe, Jamie;
- Kedzierska, Katherine;
- Cannon, Judy L.;
- McGargill, Maureen A.;
- Weiskopf, Daniela;
- Mettelman, Robert C.;
- Niessl, Julia;
- Thomas, Paul G.;
- Briney, Bryan;
- Valkenburg, Sophie A.;
- Bloom, Jesse D.;
- Bjorkman, Pamela J.;
- Iketani, Sho;
- Rappazzo, C. Garrett
Publication type:
Article
Reprogramming the antigen specificity of B cells using genome-editing technologies.
Published in:
eLife, 2019, p. 1, doi. 10.7554/eLife.42995
By:
- Voss, James E.;
- Gonzalez-Martin, Alicia;
- Andrabi, Raiees;
- Fuller, Roberta P.;
- Murrell, Ben;
- McCoy, Laura E.;
- Porter, Katelyn;
- Huang, Deli;
- Li, Wenjuan;
- Sok, Devin;
- Le, Khoa;
- Briney, Bryan;
- Chateau, Morgan;
- Rogers, Geoffrey;
- Hangartner, Lars;
- Feeney, Ann J.;
- Nemazee, David;
- Cannon, Paula;
- Burton, Dennis R.
Publication type:
Article
Clonify: unseeded antibody lineage assignment from next-generation sequencing data.
Published in:
Scientific Reports, 2016, p. 23901, doi. 10.1038/srep23901
By:
- Briney, Bryan;
- Le, Khoa;
- Zhu, Jiang;
- Burton, Dennis R.
Publication type:
Article
Tissue-Specific Expressed Antibody Variable Gene Repertoires.
Published in:
PLoS ONE, 2014, v. 9, n. 6, p. 1, doi. 10.1371/journal.pone.0100839
By:
- Briney, Bryan S.;
- Willis, Jordan R.;
- Finn, Jessica A.;
- McKinney, Brett A.;
- Crowe Jr, James E.
Publication type:
Article
Human Peripheral Blood Antibodies with Long HCDR3s Are Established Primarily at Original Recombination Using a Limited Subset of Germline Genes.
Published in:
PLoS ONE, 2012, v. 7, n. 5, p. 1, doi. 10.1371/journal.pone.0036750
By:
- Briney, Bryan S.;
- Willis, Jordan R.;
- Crowe, Jr., James E.
Publication type:
Article
Comparisons of the antibody repertoires of a humanized rodent and humans by high throughput sequencing.
Published in:
Scientific Reports, 2020, v. 10, n. 1, p. 1, doi. 10.1038/s41598-020-57764-7
By:
- Joyce, Collin;
- Burton, Dennis R.;
- Briney, Bryan
Publication type:
Article
Correction: Tissue-Specific Expressed Antibody Variable Gene Repertoires.
Published in:
2020
By:
- Briney, Bryan S.;
- Willis, Jordan R.;
- Finn, Jessica A.;
- McKinney, Brett A.;
- Crowe, James E.
Publication type:
Correction Notice
Advancing computational biology and bioinformatics research through open innovation competitions.
Published in:
PLoS ONE, 2019, v. 14, n. 9, p. 1, doi. 10.1371/journal.pone.0222165
By:
- Blasco, Andrea;
- Endres, Michael G.;
- Sergeev, Rinat A.;
- Jonchhe, Anup;
- Macaluso, N. J. Maximilian;
- Narayan, Rajiv;
- Natoli, Ted;
- Paik, Jin H.;
- Briney, Bryan;
- Wu, Chunlei;
- Su, Andrew I.;
- Subramanian, Aravind;
- Lakhani, Karim R.
Publication type:
Article
Human Germline Antibody Gene Segments Encode Polyspecific Antibodies.
Published in:
PLoS Computational Biology, 2013, v. 9, n. 4, p. 1, doi. 10.1371/journal.pcbi.1003045
By:
- Willis, Jordan R.;
- Briney, Bryan S.;
- DeLuca, Samuel L.;
- Crowe Jr., James E.;
- Meiler, Jens
Publication type:
Article
Zika virus activates de novo and cross-reactive memory B cell responses in dengue-experienced donors.
Published in:
Science Immunology, 2017, v. 2, n. 14, p. 1, doi. 10.1126/sciimmunol.aan6809
By:
- Rogers, Thomas F.;
- Goodwin, Eileen C.;
- Briney, Bryan;
- Sok, Devin;
- Beutler, Nathan;
- Strubel, Alexander;
- Nedellec, Rebecca;
- Khoa Le;
- Brown, Michael E.;
- Burton, Dennis R.;
- Walker, Laura M.
Publication type:
Article
Neutralizing human monoclonal antibodies prevent Zika virus infection in macaques.
Published in:
Science Translational Medicine, 2017, v. 9, n. 410, p. 1, doi. 10.1126/scitranslmed.aan8184
By:
- Magnani, Diogo M.;
- Rogers, Thomas F.;
- Beutler, Nathan;
- Ricciardi, Michael J.;
- Bailey, Varian K.;
- Gonzalez-Nieto, Lucas;
- Briney, Bryan;
- Sok, Devin;
- Khoa Le;
- Strubel, Alexander;
- Gutman, Martin J.;
- Pedreño-Lopez, Núria;
- Grubaugh, Nathan D.;
- Silveira, Cassia G. T.;
- Maxwell, Helen S.;
- Domingues, Aline;
- Martins, Mauricio A.;
- Lee, David E.;
- Okwuazi, Erica E.;
- Jean, Sherrie
Publication type:
Article
The Effects of Somatic Hypermutation on Neutralization and Binding in the PGT121 Family of Broadly Neutralizing HIV Antibodies.
Published in:
PLoS Pathogens, 2013, v. 9, n. 11, p. 1, doi. 10.1371/journal.ppat.1003754
By:
- Sok, Devin;
- Laserson, Uri;
- Laserson, Jonathan;
- Liu, Yi;
- Vigneault, Francois;
- Julien, Jean-Philippe;
- Briney, Bryan;
- Ramos, Alejandra;
- Saye, Karen F.;
- Le, Khoa;
- Mahan, Alison;
- Wang, Shenshen;
- Kardar, Mehran;
- Yaari, Gur;
- Walker, Laura M.;
- Simen, Birgitte B.;
- St. John, Elizabeth P.;
- Chan-Hui, Po-Ying;
- Swiderek, Kristine;
- Kleinstein, Stephen H.
Publication type:
Article
Promiscuous Glycan Site Recognition by Antibodies to the High-Mannose Patch of gp120 Broadens Neutralization of HIV.
Published in:
Science Translational Medicine, 2014, v. 6, n. 236, p. 1, doi. 10.1126/scitranslmed.3008104
By:
- Sok, Devin;
- Doores, Katie J.;
- Briney, Bryan;
- Le, Khoa M.;
- Saye-Francisco, Karen L.;
- Ramos, Alejandra;
- Kulp, Daniel W.;
- Julien, Jean-Philippe;
- Menis, Sergey;
- Wickramasinghe, Lalinda;
- Seaman, Michael S.;
- Schief, William R.;
- Wilson, Ian A.;
- Poignard, Pascal;
- Burton, Dennis R.
Publication type:
Article
Broadening a SARS-CoV-1–neutralizing antibody for potent SARS-CoV-2 neutralization through directed evolution.
Published in:
Science Signaling, 2023, v. 16, n. 798, p. 1, doi. 10.1126/scisignal.abk3516
By:
- Zhao, Fangzhu;
- Yuan, Meng;
- Keating, Celina;
- Shaabani, Namir;
- Limbo, Oliver;
- Joyce, Collin;
- Woehl, Jordan;
- Barman, Shawn;
- Burns, Alison;
- Tran, Quoc;
- Zhu, Xueyong;
- Ricciardi, Michael;
- Peng, Linghang;
- Smith, Jessica;
- Huang, Deli;
- Briney, Bryan;
- Sok, Devin;
- Nemazee, David;
- Teijaro, John R.;
- Wilson, Ian A.
Publication type:
Article
Human Antibodies that Recognize Novel Immunodominant Quaternary Epitopes on the HIV-1 Env Protein.
Published in:
PLoS ONE, 2016, v. 11, n. 7, p. 1, doi. 10.1371/journal.pone.0158861
By:
- Hicar, Mark D.;
- Chen, Xuemin;
- Sulli, Chidananda;
- Barnes, Trevor;
- Goodman, Jason;
- Sojar, Hakimuddin;
- Briney, Bryan;
- Willis, Jordan;
- Chukwuma, Valentine U.;
- Kalams, Spyros A.;
- Doranz, Benjamin J.;
- Spearman, Paul;
- Jr.Crowe, James E.
Publication type:
Article
Haplotype-Phased Synthetic Long Reads from Short-Read Sequencing.
Published in:
PLoS ONE, 2016, v. 11, n. 1, p. 1, doi. 10.1371/journal.pone.0147229
By:
- Stapleton, James A.;
- Kim, Jeongwoon;
- Hamilton, John P.;
- Wu, Ming;
- Irber, Luiz C.;
- Maddamsetti, Rohan;
- Briney, Bryan;
- Newton, Linsey;
- Burton, Dennis R.;
- Brown, C. Titus;
- Chan, Christina;
- Buell, C. Robin;
- Whitehead, Timothy A.
Publication type:
Article
Correction: Minimally Mutated HIV-1 Broadly Neutralizing Antibodies to Guide Reductionist Vaccine Design.
Published in:
2016
By:
- Jardine, Joseph G.;
- Sok, Devin;
- Julien, Jean-Philippe;
- Briney, Bryan;
- Sarkar, Anita;
- Liang, Chi-Hui;
- Scherer, Erin M.;
- Henry Dunand, Carole J.;
- Adachi, Yumiko;
- Diwanji, Devan;
- Hsueh, Jessica;
- Jones, Meaghan;
- Kalyuzhniy, Oleksandr;
- Kubitz, Michael;
- Spencer, Skye;
- Pauthner, Matthias;
- Saye-Francisco, Karen L.;
- Sesterhenn, Fabian;
- Wilson, Patrick C.;
- Galloway, Denise A.
Publication type:
Correction Notice
Minimally Mutated HIV-1 Broadly Neutralizing Antibodies to Guide Reductionist Vaccine Design.
Published in:
PLoS Pathogens, 2016, v. 12, n. 8, p. 1, doi. 10.1371/journal.ppat.1005815
By:
- Jardine, Joseph G.;
- Sok, Devin;
- Julien, Jean-Philippe;
- Briney, Bryan;
- Sarkar, Anita;
- Liang, Chi-Hui;
- Scherer, Erin A.;
- Henry Dunand, Carole J.;
- Adachi, Yumiko;
- Diwanji, Devan;
- Hsueh, Jessica;
- Jones, Meaghan;
- Kalyuzhniy, Oleksandr;
- Kubitz, Michael;
- Spencer, Skye;
- Pauthner, Matthias;
- Saye-Francisco, Karen L.;
- Sesterhenn, Fabian;
- Wilson, Patrick C.;
- Galloway, Denise M.
Publication type:
Article
Frequency and genetic characterization of V(DD)J recombinants in the human peripheral blood antibody repertoire.
Published in:
Immunology, 2012, v. 137, n. 1, p. 56, doi. 10.1111/j.1365-2567.2012.03605.x
By:
- Briney, Bryan S.;
- Willis, Jordan R.;
- Hicar, Mark D.;
- Thomas, James W.;
- Crowe, James E.
Publication type:
Article
AntiRef: reference clusters of human antibody sequences.
Published in:
Bioinformatics Advances, 2023, v. 3, n. 1, p. 1, doi. 10.1093/bioadv/vbad109
By:
- Briney, Bryan
Publication type:
Article
B cell repertoire sequencing of HIV-1 pediatric elite-neutralizers identifies multiple broadly neutralizing antibody clonotypes.
Published in:
Frontiers in Immunology, 2024, p. 1, doi. 10.3389/fimmu.2024.1272493
By:
- Kumar, Sanjeev;
- Bajpai, Prashant;
- Joyce, Collin;
- Kabra, Sushil Kumar;
- Lodha, Rakesh;
- Burton, Dennis R.;
- Briney, Bryan;
- Luthra, Kalpana
Publication type:
Article
Benchmarking immunoinformatic tools for the analysis of antibody repertoire sequences.
Published in:
Bioinformatics, 2020, v. 36, n. 6, p. 1731, doi. 10.1093/bioinformatics/btz845
By:
- Smakaj, Erand;
- Babrak, Lmar;
- Ohlin, Mats;
- Shugay, Mikhail;
- Briney, Bryan;
- Tosoni, Deniz;
- Galli, Christopher;
- Grobelsek, Vendi;
- D'Angelo, Igor;
- Olson, Branden;
- Reddy, Sai;
- Greiff, Victor;
- Trück, Johannes;
- Marquez, Susanna;
- Lees, William;
- Miho, Enkelejda
Publication type:
Article

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