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Longitudinal analysis of host protein serum signatures of treatment and recovery in pulmonary tuberculosis.
Published in:
PLoS ONE, 2024, v. 19, n. 2, p. 1, doi. 10.1371/journal.pone.0294603
By:
- Powell, Samantha M.;
- Jarsberg, Leah G.;
- Zionce, Erin L. M.;
- Anderson, Lindsey N.;
- Gritsenko, Marina A.;
- Nahid, Payam;
- Jacobs, Jon M.
Publication type:
Article
Free 25-Hydroxyvitamin D: Impact of Vitamin D Binding Protein Assays on Racial-Genotypic Associations.
Published in:
2016
By:
- Nielson, Carrie M;
- Jones, Kerry S;
- Chun, Rene F;
- Jacobs, Jon M;
- Wang, Ying;
- Hewison, Martin;
- Adams, John S;
- Swanson, Christine M;
- Lee, Christine G;
- Vanderschueren, Dirk;
- Pauwels, Steven;
- Prentice, Ann;
- Smith, Richard D;
- Shi, Tujin;
- Gao, Yuqian;
- Schepmoes, Athena A;
- Zmuda, Joseph M;
- Lapidus, Jodi;
- Cauley, Jane A;
- Bouillon, Roger
Publication type:
journal article
Proteomic Analysis of Saliva in HIV-Positive Heroin Addicts Reveals Proteins Correlated with Cognition.
Published in:
PLoS ONE, 2014, v. 9, n. 4, p. 1, doi. 10.1371/journal.pone.0089366
By:
- Dominy, Stephen S.;
- Brown, Joseph N.;
- Ryder, Mark I.;
- Gritsenko, Marina;
- Jacobs, Jon M.;
- Smith, Richard D.
Publication type:
Article
Diurnal Rhythms Result in Significant Changes in the Cellular Protein Complement in the Cyanobacterium Cyanothece 51142.
Published in:
PLoS ONE, 2011, v. 6, n. 2, p. 1, doi. 10.1371/journal.pone.0016680
By:
- Stöckel, Jana;
- Jacobs, Jon M.;
- Elvitigala, Thanura R.;
- Liberton, Michelle;
- Welsh, Eric A.;
- Polpitiya, Ashoka D.;
- Gritsenko, Marina A.;
- Nicora, Carrie D.;
- Koppenaal, David W.;
- Smith, Richard D.;
- Pakrasi, Himadri B.
Publication type:
Article
Proteome Analysis of Borrelia burgdorferi Response to Environmental Change.
Published in:
PLoS ONE, 2010, v. 5, n. 11, p. 1, doi. 10.1371/journal.pone.0013800
By:
- Angel, Thomas E.;
- Luft, Benjamin J.;
- Xiaohua Yang;
- Nicora, Carrie D.;
- Camp II, David G.;
- Jacobs, Jon M.;
- Smith, Richard D.
Publication type:
Article
A statistical selection strategy for normalization procedures in LC-MS proteomics experiments through dataset-dependent ranking of normalization scaling factors.
Published in:
Proteomics, 2011, v. 11, n. 24, p. 4736, doi. 10.1002/pmic.201100078
By:
- Webb-Robertson, Bobbie-Jo M.;
- Matzke, Melissa M.;
- Jacobs, Jon M.;
- Pounds, Joel G.;
- Waters, Katrina M.
Publication type:
Article
Characterization of the human blood plasma proteome.
Published in:
Proteomics, 2005, v. 5, n. 15, p. 4034, doi. 10.1002/pmic.200401246
By:
- Yufeng Shen;
- Jeongkwon Kim;
- Eric F. Strittmatter;
- Jon M. Jacobs;
- David G. Camp;
- Ruihua Fang;
- Nikola Tolié;
- Ronald J. Moore;
- Richard D. Smith
Publication type:
Article
Proteomic analysis of Lyme disease: Global protein comparison of three strains of Borrelia burgdorferi.
Published in:
Proteomics, 2005, v. 5, n. 5, p. 1446, doi. 10.1002/pmic.200401052
By:
- Jon M. Jacobs;
- Xiaohua Yang;
- Benjamin J. Luft;
- John J. Dunn;
- David G. Camp;
- Richard D. Smith
Publication type:
Article
Improved proteome coverage by using high efficiency cysteinyl peptide enrichment: The human mammary epithelial cell proteome.
Published in:
Proteomics, 2005, v. 5, n. 5, p. 1263, doi. 10.1002/pmic.200401055
By:
- Tao Liu;
- Wei-Jun Qian;
- Wan-Nan U. Chen;
- Jon M. Jacobs;
- Ronald J. Moore;
- David J. Anderson;
- Marina A. Gritsenko;
- Matthew E. Monroe;
- Brian D. Thrall;
- David G. Camp;
- Richard D. Smith
Publication type:
Article
Comparative proteome analyses of human plasma following in vivo lipopolysaccharide administration using multidimensional separations coupled with tandem mass spectrometry.
Published in:
Proteomics, 2005, v. 5, n. 2, p. 572, doi. 10.1002/pmic.200400942
By:
- Qian, Wei-Jun;
- Jacobs, Jon M.;
- Camp, David G.;
- Monroe, Matthew E.;
- Moore, Ronald J.;
- Gritsenko, Marina A.;
- Calvano, Steve E.;
- Lowry, Stephen F.;
- Xiao, Wenzhong;
- Moldawer, Lyle L.;
- Davis, Ronald W.;
- Tompkins, Ronald G.;
- Smith, Richard D.
Publication type:
Article
Proteomic Insights into Phycobilisome Degradation, A Selective and Tightly Controlled Process in The Fast-Growing Cyanobacterium Synechococcus elongatus UTEX 2973.
Published in:
Biomolecules (2218-273X), 2019, v. 9, n. 8, p. 374, doi. 10.3390/biom9080374
By:
- Nagarajan, Aparna;
- Zhou, Mowei;
- Nguyen, Amelia Y.;
- Liberton, Michelle;
- Kedia, Komal;
- Shi, Tujin;
- Piehowski, Paul;
- Shukla, Anil;
- Fillmore, Thomas L.;
- Nicora, Carrie;
- Smith, Richard D.;
- Koppenaal, David W.;
- Jacobs, Jon M.;
- Pakrasi, Himadri B.
Publication type:
Article
Nutritional markers and proteome in patients undergoing treatment for pulmonary tuberculosis differ by geographic region.
Published in:
PLoS ONE, 2021, v. 16, n. 5, p. 1, doi. 10.1371/journal.pone.0250586
By:
- Jarsberg, Leah G.;
- Kedia, Komal;
- Wendler, Jason;
- Wright, Aaron T.;
- Piehowski, Paul D.;
- Gritsenko, Marina A.;
- Shi, Tujin;
- Lewinsohn, David M.;
- Sigal, George B.;
- Weiner, Marc H.;
- Smith, Richard D.;
- Keane, Joseph;
- Jacobs, Jon M.;
- Nahid, Payam
Publication type:
Article
Targeted Quantification of Protein Phosphorylation and Its Contributions towards Mathematical Modeling of Signaling Pathways.
Published in:
Molecules, 2023, v. 28, n. 3, p. 1143, doi. 10.3390/molecules28031143
By:
- Dakup, Panshak P.;
- Feng, Song;
- Shi, Tujin;
- Jacobs, Jon M.;
- Wiley, H. Steven;
- Qian, Wei-Jun
Publication type:
Article
Surfactant-assisted one-pot sample preparation for label-free single-cell proteomics.
Published in:
Communications Biology, 2021, v. 4, n. 1, p. 1, doi. 10.1038/s42003-021-01797-9
By:
- Tsai, Chia-Feng;
- Zhang, Pengfei;
- Scholten, David;
- Martin, Kendall;
- Wang, Yi-Ting;
- Zhao, Rui;
- Chrisler, William B.;
- Patel, Dhwani B.;
- Dou, Maowei;
- Jia, Yuzhi;
- Reduzzi, Carolina;
- Liu, Xia;
- Moore, Ronald J.;
- Burnum-Johnson, Kristin E.;
- Lin, Miao-Hsia;
- Hsu, Chuan-Chih;
- Jacobs, Jon M.;
- Kagan, Jacob;
- Srivastava, Sudhir;
- Rodland, Karin D.
Publication type:
Article
A Targeted Mass Spectrometric Assay for Reliable Sensitive Hepcidin Quantification.
Published in:
Scientific Reports, 2019, v. 9, n. 1, p. N.PAG, doi. 10.1038/s41598-019-43756-9
By:
- Moghieb, Ahmed;
- Tesfay, Lia;
- Nie, Song;
- Gritsenko, Marina;
- Fillmore, Thomas L.;
- Jacobs, Jon M.;
- Smith, Richard D.;
- Torti, Frank M.;
- Torti, Suzy V.;
- Shi, Tujin;
- Ansong, Charles
Publication type:
Article
Temporal Proteome and Lipidome Profiles Reveal Hepatitis C Virus-Associated Reprogramming of Hepatocellular Metabolism and Bioenergetics.
Published in:
PLoS Pathogens, 2010, v. 6, n. 1, p. 1, doi. 10.1371/journal.ppat.1000719
By:
- Diamond, Deborah L.;
- Syder, Andrew J.;
- Jacobs, Jon M.;
- Sorensen, Christina M.;
- Walters, Kathie-Anne;
- Proll, Sean C.;
- McDermott, Jason E.;
- Gritsenko, Marina A.;
- Qibin Zhang;
- Rui Zhao;
- Metz, Thomas O.;
- Camp II, David G.;
- Waters, Katrina M.;
- Smith, Richard D.;
- Rice, Charles M.;
- Katze, Michael G.
Publication type:
Article
Phycobilisome truncation causes widespread proteome changes in Synechocystis sp. PCC 6803.
Published in:
PLoS ONE, 2017, v. 12, n. 3, p. 1, doi. 10.1371/journal.pone.0173251
By:
- Liberton, Michelle;
- Chrisler, William B.;
- Nicora, Carrie D.;
- Moore, Ronald J.;
- Smith, Richard D.;
- Koppenaal, David W.;
- Pakrasi, Himadri B.;
- Jacobs, Jon M.
Publication type:
Article
Synechococcus elongatus UTEX 2973, a fast growing cyanobacterial chassis for biosynthesis using light and CO<sub>2</sub>.
Published in:
Scientific Reports, 2015, p. 8132, doi. 10.1038/srep08132
By:
- Yu, Jingjie;
- Liberton, Michelle;
- Cliften, Paul F.;
- Head, Richard D.;
- Jacobs, Jon M.;
- Smith, Richard D.;
- Koppenaal, David W.;
- Brand, Jerry J.;
- Pakrasi, Himadri B.
Publication type:
Article
Approach to Cerebrospinal Fluid (CSF) Biomarker Discovery and Evaluation in HIV Infection.
Published in:
Journal of NeuroImmune Pharmacology, 2013, v. 8, n. 5, p. 1147, doi. 10.1007/s11481-013-9491-3
By:
- Price, Richard W.;
- Peterson, Julia;
- Fuchs, Dietmar;
- Angel, Thomas E.;
- Zetterberg, Henrik;
- Hagberg, Lars;
- Spudich, Serena;
- Smith, Richard D.;
- Jacobs, Jon M.;
- Brown, Joseph N.;
- Gisslen, Magnus
Publication type:
Article
Assessment of the Utility of the Oral Fluid and Plasma Proteomes for Hydrocodone Exposure.
Published in:
Journal of Medical Toxicology, 2020, v. 16, n. 1, p. 49, doi. 10.1007/s13181-019-00731-0
By:
- Deatherage Kaiser, Brooke L.;
- Jacobs, Jon M.;
- Schepmoes, Athena A.;
- Brewer, Heather M.;
- Webb-Robertson, Bobbie-Jo M.;
- Valtier, Sandra;
- Bebarta, Vikhyat S.;
- Adkins, Joshua N.
Publication type:
Article
Comparative Proteomics and Pulmonary Toxicity of Instilled Single-Walled Carbon Nanotubes, Crocidolite Asbestos, and Ultrafine Carbon Black in Mice.
Published in:
Toxicological Sciences, 2011, v. 120, n. 1, p. 123, doi. 10.1093/toxsci/kfq363
By:
- Teeguarden, Justin G.;
- Webb-Robertson, Bobbie-Jo;
- Waters, Katrina M.;
- Murray, Ashley R.;
- Kisin, Elena R.;
- Varnum, Susan M.;
- Jacobs, Jon M.;
- Pounds, Joel G.;
- Zanger, Richard C.;
- Shvedova, Anna A.
Publication type:
Article
Improved quality control processing of peptide-centric LC-MS proteomics data.
Published in:
Bioinformatics, 2011, v. 27, n. 20, p. 2866, doi. 10.1093/bioinformatics/btr479
By:
- Matzke, Melissa M.;
- Waters, Katrina M.;
- Metz, Thomas O.;
- Jacobs, Jon M.;
- Sims, Amy C.;
- Baric, Ralph S.;
- Pounds, Joel G.;
- Webb-Robertson, Bobbie-Jo M.
Publication type:
Article
Identification of integrated proteomics and transcriptomics signature of alcohol-associated liver disease using machine learning.
Published in:
PLoS Digital Health, 2024, v. 3, n. 2, p. 1, doi. 10.1371/journal.pdig.0000447
By:
- Listopad, Stanislav;
- Magnan, Christophe;
- Day, Le Z.;
- Asghar, Aliya;
- Stolz, Andrew;
- Tayek, John A.;
- Liu, Zhang-Xu;
- Jacobs, Jon M.;
- Morgan, Timothy R.;
- Norden-Krichmar, Trina M.
Publication type:
Article

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