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Phaseolin mRNA is translated to yield glycosylated polypeptides in Xenopus oocytes.
Published in:
Nature, 1981, v. 294, n. 5837, p. 175, doi. 10.1038/294175a0
By:
- Matthews, Jayne A.;
- Brown, John W. S.;
- Hall, Timothy C.
Publication type:
Article
Clusters of multiple different small nucleolar RNA genes in plants are expressed as and processed from polycistronic pre-snoRNAs.
Published in:
EMBO Journal, 1997, v. 16, n. 18, p. 5742, doi. 10.1093/emboj/16.18.5742
By:
- Leader, David J.;
- Clark, Gillian P.;
- Watters, Jenny;
- Beven, Alison F.;
- Shaw, Peter J.;
- Brown, John W. S.
Publication type:
Article
Illuminating the dark side of the human transcriptome with long read transcript sequencing.
Published in:
BMC Genomics, 2020, v. 21, n. 1, p. N.PAG, doi. 10.1186/s12864-020-07123-7
By:
- Kuo, Richard I.;
- Cheng, Yuanyuan;
- Zhang, Runxuan;
- Brown, John W. S.;
- Smith, Jacqueline;
- Archibald, Alan L.;
- Burt, David W.
Publication type:
Article
BaRTv1.0: an improved barley reference transcript dataset to determine accurate changes in the barley transcriptome using RNA-seq.
Published in:
BMC Genomics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12864-019-6243-7
By:
- Rapazote-Flores, Paulo;
- Bayer, Micha;
- Milne, Linda;
- Mayer, Claus-Dieter;
- Fuller, John;
- Guo, Wenbin;
- Hedley, Pete E.;
- Morris, Jenny;
- Halpin, Claire;
- Kam, Jason;
- McKim, Sarah M.;
- Zwirek, Monika;
- Casao, M. Cristina;
- Barakate, Abdellah;
- Schreiber, Miriam;
- Stephen, Gordon;
- Zhang, Runxuan;
- Brown, John W. S.;
- Waugh, Robbie;
- Simpson, Craig G.
Publication type:
Article
Alternative Splicing of Circadian Clock Genes Correlates With Temperature in Field-Grown Sugarcane.
Published in:
Frontiers in Plant Science, 2019, p. 1, doi. 10.3389/fpls.2019.01614
By:
- Dantas, Luíza L. B.;
- Calixto, Cristiane P. G.;
- Dourado, Maira M.;
- Carneiro, Monalisa S.;
- Brown, John W. S.;
- Hotta, Carlos T.
Publication type:
Article
How does temperature affect splicing events? Isoform switching of splicing factors regulates splicing of LATE ELONGATED HYPOCOTYL (LHY).
Published in:
Plant, Cell & Environment, 2018, v. 41, n. 7, p. 1539, doi. 10.1111/pce.13193
By:
- James, Allan B.;
- Calixto, Cristiane P. G.;
- Tzioutziou, Nikoleta A.;
- Guo, Wenbin;
- Zhang, Runxuan;
- Simpson, Craig G.;
- Jiang, Wenying;
- Nimmo, Gillian A.;
- Brown, John W. S.;
- Nimmo, Hugh G.
Publication type:
Article
Monitoring changes in alternative precursor messenger RNA splicing in multiple gene transcripts.
Published in:
Plant Journal, 2008, v. 53, n. 6, p. 1035, doi. 10.1111/j.1365-313X.2007.03392.x
By:
- Simpson, Craig G.;
- Fuller, John;
- Maronova, Monika;
- Kalyna, Maria;
- Davidson, Diane;
- McNicol, Jim;
- Barta, Andrea;
- Brown, John W. S.
Publication type:
Article
Interactions between introns via exon definition in plant pre-mRNA splicing.
Published in:
Plant Journal, 1999, v. 18, n. 3, p. 293, doi. 10.1046/j.1365-313X.1999.00463.x
By:
- Simpson, Craig G.;
- Clark, Gillian P.;
- Lyon, Jackie M.;
- Watters, Jenny;
- McQuade, Clare;
- Brown, John W. S.
Publication type:
Article
A high quality Arabidopsis transcriptome for accurate transcript-level analysis of alternative splicing.
Published in:
Nucleic Acids Research, 2017, v. 45, n. 9, p. 5061, doi. 10.1093/nar/gkx267
By:
- Runxuan Zhang;
- Calixto, Cristiane P. G.;
- Marquez, Yamile;
- Venhuizen, Peter;
- Tzioutziou, Nikoleta A.;
- Wenbin Guo;
- Spensley, Mark;
- Carlos Entizne, Juan;
- Lewandowska, Dominika;
- Have, Sara ten;
- dit Frey, Nicolas Frei;
- Hirt, Heribert;
- James, Allan B.;
- Nimmo, Hugh G.;
- Barta, Andrea;
- Kalyna, Maria;
- Brown, John W. S.
Publication type:
Article
The SERRATE protein is involved in alternative splicing in Arabidopsis thaliana.
Published in:
Nucleic Acids Research, 2014, v. 42, n. 2, p. 1224, doi. 10.1093/nar/gkt894
By:
- Raczynska, Katarzyna Dorota;
- Stepien, Agata;
- Kierzkowski, Daniel;
- Kalak, Malgorzata;
- Bajczyk, Mateusz;
- McNicol, Jim;
- Simpson, Craig G.;
- Szweykowska-Kulinska, Zofia;
- Brown, John W. S.;
- Jarmolowski, Artur
Publication type:
Article
An hnRNP-like RNA-binding protein affects alternative splicing by in vivo interaction with transcripts in Arabidopsis thaliana.
Published in:
Nucleic Acids Research, 2012, v. 40, n. 22, p. 11240, doi. 10.1093/nar/gks873
By:
- Streitner, Corinna;
- Köster, Tino;
- Simpson, Craig G.;
- Shaw, Paul;
- Danisman, Selahattin;
- Brown, John W. S.;
- Staiger, Dorothee
Publication type:
Article
Alternative splicing and nonsense-mediated decay modulate expression of important regulatory genes in Arabidopsis.
Published in:
Nucleic Acids Research, 2012, v. 40, n. 6, p. 2454, doi. 10.1093/nar/gkr932
By:
- Kalyna, Maria;
- Simpson, Craig G.;
- Syed, Naeem H.;
- Lewandowska, Dominika;
- Marquez, Yamile;
- Kusenda, Branislav;
- Marshall, Jacqueline;
- Fuller, John;
- Cardle, Linda;
- McNicol, Jim;
- Dinh, Huy Q.;
- Barta, Andrea;
- Brown, John W. S.
Publication type:
Article
Plant U13 orthologues and orphan snoRNAs identified by RNomics of RNA from Arabidopsis nucleoli.
Published in:
Nucleic Acids Research, 2010, v. 38, n. 9, p. 3054, doi. 10.1093/nar/gkp1241
By:
- Kim, Sang Hyon;
- Spensley, Mark;
- Choi, Seung Kook;
- Calixto, Cristiane P. G.;
- Pendle, Ali F.;
- Koroleva, Olga;
- Shaw, Peter J.;
- Brown, John W. S.
Publication type:
Article
Involvement of the nuclear cap-binding protein complex in alternative splicing in Arabidopsis thaliana.
Published in:
Nucleic Acids Research, 2010, v. 38, n. 1, p. 265, doi. 10.1093/nar/gkp869
By:
- Raczynska, Katarzyna Dorota;
- Simpson, Craig G.;
- Ciesiolka, Adam;
- Szewc, Lukasz;
- Lewandowska, Dominika;
- McNicol, Jim;
- Szweykowska-Kulinska, Zofia;
- Brown, John W. S.;
- Jarmolowski, Artur
Publication type:
Article
BaRTv2: a highly resolved barley reference transcriptome for accurate transcript‐specific RNA‐seq quantification.
Published in:
Plant Journal, 2022, v. 111, n. 4, p. 1183, doi. 10.1111/tpj.15871
By:
- Coulter, Max;
- Entizne, Juan Carlos;
- Guo, Wenbin;
- Bayer, Micha;
- Wonneberger, Ronja;
- Milne, Linda;
- Schreiber, Miriam;
- Haaning, Allison;
- Muehlbauer, Gary J.;
- McCallum, Nicola;
- Fuller, John;
- Simpson, Craig;
- Stein, Nils;
- Brown, John W. S.;
- Waugh, Robbie;
- Zhang, Runxuan
Publication type:
Article
Plant SILAC: Stable-Isotope Labelling with Amino Acids of <i>Arabidopsis</i> Seedlings for Quantitative Proteomics.
Published in:
PLoS ONE, 2013, v. 8, n. 8, p. 1, doi. 10.1371/journal.pone.0072207
By:
- Lewandowska, Dominika;
- ten Have, Sara;
- Hodge, Kelly;
- Tillemans, Vinciane;
- Lamond, Angus I.;
- Brown, John W. S.
Publication type:
Article
Evaluation and improvement of the regulatory inference for large co-expression networks with limited sample size.
Published in:
BMC Systems Biology, 2017, v. 11, p. 1, doi. 10.1186/s12918-017-0440-2
By:
- Guo, Wenbin;
- Calixto, Cristiane P. G.;
- Nikoleta Tzioutziou;
- Ping Lin;
- Waugh, Robbie;
- Brown, John W. S.;
- Zhang, Runxuan
Publication type:
Article
Cajal bodies and the nucleolus are required for a plant virus systemic infection.
Published in:
EMBO Journal, 2007, v. 26, n. 8, p. 2169, doi. 10.1038/sj.emboj.7601674
By:
- Kim, Sang Hyon;
- Ryabov, Eugene V;
- Kalinina, Natalia O;
- Rakitina, Daria V;
- Gillespie, Trudi;
- MacFarlane, Stuart;
- Haupt, Sophie;
- Brown, John W S;
- Taliansky, Michael
Publication type:
Article
A methyl transferase links the circadian clock to the regulation of alternative splicing.
Published in:
Nature, 2010, v. 468, n. 7320, p. 112, doi. 10.1038/nature09470
By:
- Sanchez, Sabrina E.;
- Petrillo, Ezequiel;
- Beckwith, Esteban J.;
- Xu Zhang;
- Rugnone, Matias L.;
- Hernando, C. Esteban;
- Cuevas, Juan C.;
- Godoy Herz, Micaela A.;
- Depetris-Chauvin, Ana;
- Simpson, Craig G.;
- Brown, John W. S.;
- Cerdán, Pablo D.;
- Borevitz, Justin O.;
- Mas, Paloma;
- Ceriani, M. Fernanda;
- Kornblihtt, Alberto R.;
- Yanovsky, Marcelo J.
Publication type:
Article
Arabidopsis nucleolar protein database (AtNoPDB).
Published in:
Nucleic Acids Research, 2005, v. 33, n. suppl 1, p. d633
By:
- Brown, John W. S.;
- Shaw, Peter J.;
- Shaw, Paul;
- Marshall, David F.
Publication type:
Article
Plant snoRNA database.
Published in:
Nucleic Acids Research, 2003, v. 31, n. 1, p. 432, doi. 10.1093/nar/gkg009
By:
- Brown, John W. S.;
- Echeverria, Manuel;
- Qu, Liang-Hu;
- Lowe, Todd M.;
- Bachellerie, Jean-Pierre;
- Hüttenhofer, Alexander;
- Kastenmayer, James P.;
- Green, Pamela J.;
- Shaw, Paul;
- Marshall, Dave F.
Publication type:
Article
CONTROL OF ENDOSPERM PROTEINS IN TRITICUM AESTIVUM (var. CHINESE SPRING) AND AEGILOPS UMBELLULATA BY HOMOEOLOGOUS GROUP 1 CHROMOSOMES.
Published in:
Genetics, 1979, v. 93, n. 1, p. 189, doi. 10.1093/genetics/93.1.189
By:
- BROWN, JOHN W. S.;
- KEMBLE, ROGER J.;
- LAW, COLIN N.;
- FLAVELL, RICHARD B.
Publication type:
Article
REVEILLE2 thermosensitive splicing: a molecular basis for the integration of nocturnal temperature information by the Arabidopsis circadian clock.
Published in:
New Phytologist, 2024, v. 241, n. 1, p. 283, doi. 10.1111/nph.19339
By:
- James, Allan B.;
- Sharples, Chantal;
- Laird, Janet;
- Armstrong, Emily May;
- Guo, Wenbin;
- Tzioutziou, Nikoleta;
- Zhang, Runxuan;
- Brown, John W. S.;
- Nimmo, Hugh G.;
- Jones, Matthew A.
Publication type:
Article
Cold-Dependent Expression and Alternative Splicing of Arabidopsis Long Non-coding RNAs.
Published in:
Frontiers in Plant Science, 2019, p. N.PAG, doi. 10.3389/fpls.2019.00235
By:
- Calixto, Cristiane P. G.;
- Tzioutziou, Nikoleta A.;
- James, Allan B.;
- Hornyik, Csaba;
- Guo, Wenbin;
- Zhang, Runxuan;
- Nimmo, Hugh G.;
- Brown, John W. S.
Publication type:
Article
Alternative Splicing of Barley Clock Genes in Response to Low Temperature.
Published in:
PLoS ONE, 2016, v. 11, n. 12, p. 1, doi. 10.1371/journal.pone.0168028
By:
- Calixto, Cristiane P. G.;
- Simpson, Craig G.;
- Waugh, Robbie;
- Brown, John W. S.
Publication type:
Article
The SERRATE protein is involved in alternative splicing in Arabidopsis thaliana.
Published in:
Nucleic Acids Research, 2020, v. 48, n. 3, p. 1604, doi. 10.1093/nar/gkaa045
By:
- Raczynska, Katarzyna Dorota;
- Stepien, Agata;
- Kierzkowski, Daniel;
- Kalak, Malgorzata;
- Bajczyk, Mateusz;
- McNicol, Jim;
- Simpson, Craig G;
- Szweykowska-Kulinska, Zofia;
- Brown, John W S;
- Jarmolowski, Artur
Publication type:
Article
High-quality reference transcript datasets hold the key to transcript-specific RNA-sequencing analysis in plants.
Published in:
New Phytologist, 2017, v. 213, n. 2, p. 525, doi. 10.1111/nph.14208
By:
- Brown, John W. S.;
- Calixto, Cristiane P. G.;
- Zhang, Runxuan
Publication type:
Article
At RTD - a comprehensive reference transcript dataset resource for accurate quantification of transcript-specific expression in Arabidopsis thaliana.
Published in:
New Phytologist, 2015, v. 208, n. 1, p. 96, doi. 10.1111/nph.13545
By:
- Zhang, Runxuan;
- Calixto, Cristiane P. G.;
- Tzioutziou, Nikoleta A.;
- James, Allan B.;
- Simpson, Craig G.;
- Guo, Wenbin;
- Marquez, Yamile;
- Kalyna, Maria;
- Patro, Rob;
- Eyras, Eduardo;
- Barta, Andrea;
- Nimmo, Hugh G.;
- Brown, John W. S.
Publication type:
Article
Arabidopsis PTB1 and PTB2 proteins negatively regulate splicing of a mini-exon splicing reporter and affect alternative splicing of endogenous genes differentially.
Published in:
New Phytologist, 2014, v. 203, n. 2, p. 424, doi. 10.1111/nph.12821
By:
- Simpson, Craig G.;
- Lewandowska, Dominika;
- Liney, Michele;
- Davidson, Diane;
- Chapman, Sean;
- Fuller, John;
- McNicol, Jim;
- Shaw, Paul;
- Brown, John W. S.
Publication type:
Article
TSIS: an R package to infer alternative splicing isoform switches for time-series data.
Published in:
Bioinformatics, 2017, v. 33, n. 20, p. 3308, doi. 10.1093/bioinformatics/btx411
By:
- Guo, Wenbin;
- Calixto, Cristiane P. G.;
- Brown, John W. S.;
- Runxuan Zhang
Publication type:
Article

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