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Species-specific responses of marine bacteria to environmental perturbation.
Published in:
ISME Communications, 2023, v. 3, n. 1, p. 1, doi. 10.1038/s43705-023-00310-z
By:
- Peña-Montenegro, Tito D.;
- Kleindienst, Sara;
- Allen, Andrew E.;
- Eren, A. Murat;
- McCrow, John P.;
- Sánchez-Calderón, Juan D.;
- Arnold, Jonathan;
- Joye, Samantha B.
Publication type:
Article
Diversity and Expression of Bacterial Metacaspases in an Aquatic Ecosystem.
Published in:
Frontiers in Microbiology, 2016, p. 1, doi. 10.3389/fmicb.2016.01043
By:
- Asplund-Samuelsson, Johannes;
- Sundh, John;
- Dupont, Chris L.;
- Allen, Andrew E.;
- McCrow, John P.;
- Celepli, Narin A.;
- Bergman, Birgitta;
- Ininbergs, Karolina;
- Ekman, Martin;
- Stewart, Frank;
- Berges, John
Publication type:
Article
Genetic Manipulation of Competition for Nitrate between Heterotrophic Bacteria and Diatoms.
Published in:
Frontiers in Microbiology, 2016, p. 1, doi. 10.3389/fmicb.2016.00880
By:
- Diner, Rachel E.;
- Schwenck, Sarah M.;
- McCrow, John P.;
- Hong Zheng;
- Allen, Andrew E.;
- Song Xue;
- Sher, Daniel Jonathan
Publication type:
Article
Genomes and gene expression across light and productivity gradients in eastern subtropical Pacific microbial communities.
Published in:
ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2015, v. 9, n. 5, p. 1076, doi. 10.1038/ismej.2014.198
By:
- Dupont, Chris L;
- McCrow, John P;
- Valas, Ruben;
- Moustafa, Ahmed;
- Walworth, Nathan;
- Goodenough, Ursula;
- Roth, Robyn;
- Hogle, Shane L;
- Bai, Jing;
- Johnson, Zackary I;
- Mann, Elizabeth;
- Palenik, Brian;
- Barbeau, Katherine A;
- Craig Venter, J;
- Allen, Andrew E
Publication type:
Article
Influence of nutrients and currents on the genomic composition of microbes across an upwelling mosaic.
Published in:
ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2012, v. 6, n. 7, p. 1403, doi. 10.1038/ismej.2011.201
By:
- Allen, Lisa Zeigler;
- Allen, Eric E;
- Badger, Jonathan H;
- McCrow, John P;
- Paulsen, Ian T;
- Elbourne, Liam DH;
- Thiagarajan, Mathangi;
- Rusch, Doug B;
- Nealson, Kenneth H;
- Williamson, Shannon J;
- Venter, J Craig;
- Allen, Andrew E
Publication type:
Article
Sierra Nevada mountain lake microbial communities are structured by temperature, resources and geographic location.
Published in:
Molecular Ecology, 2020, v. 29, n. 11, p. 2080, doi. 10.1111/mec.15469
By:
- Schulhof, Marika A.;
- Allen, Andrew E.;
- Allen, Eric E.;
- Mladenov, Natalie;
- McCrow, John P.;
- Jones, Natalie T.;
- Blanton, Jessica;
- Cavalheri, Hamanda B.;
- Kaul, Drishti;
- Symons, Celia C.;
- Shurin, Jonathan B.
Publication type:
Article
Functional Tradeoffs Underpin Salinity-Driven Divergence in Microbial Community Composition.
Published in:
PLoS ONE, 2014, v. 9, n. 2, p. 1, doi. 10.1371/journal.pone.0089549
By:
- Dupont, Chris L.;
- Larsson, John;
- Yooseph, Shibu;
- Ininbergs, Karolina;
- Goll, Johannes;
- Asplund-Samuelsson, Johannes;
- McCrow, John P.;
- Celepli, Narin;
- Allen, Lisa Zeigler;
- Ekman, Martin;
- Lucas, Andrew J.;
- Hagström, Åke;
- Thiagarajan, Mathangi;
- Brindefalk, Björn;
- Richter, Alexander R.;
- Andersson, Anders F.;
- Tenney, Aaron;
- Lundin, Daniel;
- Tovchigrechko, Andrey;
- Nylander, Johan A. A.
Publication type:
Article
Metagenomic Exploration of Viruses throughout the Indian Ocean.
Published in:
PLoS ONE, 2012, v. 7, n. 10, p. 1, doi. 10.1371/journal.pone.0042047
By:
- Williamson, Shannon J.;
- Allen, Lisa Zeigler;
- Lorenzi, Hernan A.;
- Fadrosh, DouglasW.;
- Brami, Daniel;
- Thiagarajan, Mathangi;
- McCrow, John P.;
- Tovchigrechko, Andrey;
- Yooseph, Shibu;
- Venter, J. Craig
Publication type:
Article
Evolution and regulation of nitrogen flux through compartmentalized metabolic networks in a marine diatom.
Published in:
Nature Communications, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41467-019-12407-y
By:
- Smith, Sarah R.;
- Dupont, Chris L.;
- McCarthy, James K.;
- Broddrick, Jared T.;
- Oborník, Miroslav;
- Horák, Aleš;
- Füssy, Zoltán;
- Cihlář, Jaromír;
- Kleessen, Sabrina;
- Zheng, Hong;
- McCrow, John P.;
- Hixson, Kim K.;
- Araújo, Wagner L.;
- Nunes-Nesi, Adriano;
- Fernie, Alisdair;
- Nikoloski, Zoran;
- Palsson, Bernhard O.;
- Allen, Andrew E.
Publication type:
Article
Genome and methylome of the oleaginous diatom Cyclotella cryptica reveal genetic flexibility toward a high lipid phenotype.
Published in:
Biotechnology for Biofuels, 2016, v. 9, p. 1, doi. 10.1186/s13068-016-0670-3
By:
- Traller, Jesse C.;
- Cokus, Shawn J.;
- Lopez, David A.;
- Gaidarenko, Olga;
- Smith, Sarah R.;
- McCrow, John P.;
- Gallaher, Sean D.;
- Podell, Sheila;
- Thompson, Michael;
- Cook, Orna;
- Morselli, Marco;
- Jaroszewicz, Artur;
- Allen, Eric E.;
- Allen, Andrew E.;
- Merchant, Sabeeha S.;
- Pellegrini, Matteo;
- Hildebrand, Mark
Publication type:
Article
Colony formation in Phaeocystis antarctica: connecting molecular mechanisms with iron biogeochemistry.
Published in:
Biogeosciences, 2018, v. 15, n. 16, p. 4923, doi. 10.5194/bg-15-4923-2018
By:
- Bender, Sara J.;
- Moran, Dawn M.;
- McIlvin, Matthew R.;
- Zheng, Hong;
- McCrow, John P.;
- Badger, Jonathan;
- DiTullio, Giacomo R.;
- Allen, Andrew E.;
- Saito, Mak A.
Publication type:
Article
Evolution and metabolic significance of the urea cycle in photosynthetic diatoms.
Published in:
Nature, 2011, v. 473, n. 7346, p. 203, doi. 10.1038/nature10074
By:
- Allen, Andrew E.;
- Dupont, Christopher L.;
- Oborník, Miroslav;
- Horák, Aleš;
- Nunes-Nesi, Adriano;
- McCrow, John P.;
- Hong Zheng;
- Johnson, Daniel A.;
- Hanhua Hu;
- Fernie, Alisdair R.;
- Bowler, Chris
Publication type:
Article
Genomic and functional adaptation in surface ocean planktonic prokaryotes.
Published in:
Nature, 2010, v. 468, n. 7320, p. 60, doi. 10.1038/nature09530
By:
- Yooseph, Shibu;
- Nealson, Kenneth H.;
- Rusch, Douglas B.;
- McCrow, John P.;
- Dupont, Christopher L.;
- Kim, Maria;
- Johnson, Justin;
- Montgomery, Robert;
- Ferriera, Steve;
- Beeson, Karen;
- Williamson, Shannon J.;
- Tovchigrechko, Andrey;
- Allen, Andrew E.;
- Zeigler, Lisa A.;
- Sutton, Granger;
- Eisenstadt, Eric;
- Rogers, Yu-Hui;
- Friedman, Robert;
- Frazier, Marvin;
- Venter, J. Craig
Publication type:
Article
Nitrate Reductase Knockout Uncouples Nitrate Transport from Nitrate Assimilation and Drives Repartitioning of Carbon Flux in a Model Pennate Diatom.
Published in:
Plant Cell, 2017, v. 29, n. 8, p. 2047, doi. 10.1105/tpc.16.00910
By:
- McCarthy, James K.;
- Smith, Sarah R.;
- McCrow, John P.;
- Tan, Maxine;
- Zheng, Hong;
- Beeri, Karen;
- Roth, Robyn;
- Lichtle, Christian;
- Goodenough, Ursula;
- Bowler, Chris P.;
- Dupont, Christopher L.;
- Allen, Andrew E.
Publication type:
Article
Hydrothermal trace metal release and microbial metabolism in the Northeast Lau Basin of the south Pacific Ocean.
Published in:
Biogeosciences Discussions, 2021, p. 1, doi. 10.5194/bg-2021-96
By:
- Cohen, Natalie R.;
- Noble, Abigail E.;
- Moran, Dawn M.;
- McIlvin, Matthew R.;
- Goepfert, Tyler J.;
- Hawco, Nicholas J.;
- German, Christopher R.;
- Horner, Tristan J.;
- Lamborg, Carl H.;
- McCrow, John P.;
- Allen, Andrew E.;
- Saito, Mak A.
Publication type:
Article
Spectrum of mitochondrial genomic variation and associated clinical presentation of prostate cancer in South African men.
Published in:
Prostate, 2016, v. 76, n. 4, p. 349, doi. 10.1002/pros.23126
By:
- McCrow, John P.;
- Petersen, Desiree C.;
- Louw, Melanie;
- Chan, Eva K. F.;
- Harmeyer, Katherine;
- Vecchiarelli, Stefano;
- Lyons, Ruth J.;
- Bornman, M. S. Riana;
- Hayes, Vanessa M.
Publication type:
Article
Patterns of Transcript Abundance of Eukaryotic Biogeochemically-Relevant Genes in the Amazon River Plume.
Published in:
PLoS ONE, 2016, v. 11, n. 9, p. 1, doi. 10.1371/journal.pone.0160929
By:
- Zielinski, Brian L.;
- Allen, Andrew E.;
- Carpenter, Edward J.;
- Coles, Victoria J.;
- Crump, Byron C.;
- Doherty, Mary;
- Foster, Rachel A.;
- Goes, Joaquim I.;
- Gomes, Helga R.;
- Hood, Raleigh R.;
- McCrow, John P.;
- Montoya, Joseph P.;
- Moustafa, Ahmed;
- Satinsky, Brandon M.;
- Sharma, Shalabh;
- Smith, Christa B.;
- Yager, Patricia L.;
- Paul, John H.
Publication type:
Article
Iron triggers colony formation in Phaeocystis antarctica: connecting molecular mechanisms with iron biogeochemistry.
Published in:
Biogeosciences Discussions, 2018, p. 1, doi. 10.5194/bg-2017-558
By:
- Bender, Sara J.;
- Moran, Dawn M.;
- McIlvin, Matthew R.;
- Hong Zheng;
- McCrow, John P.;
- Badger, Jonathan;
- DiTullio, Giacomo R.;
- Allen, Andrew E.;
- Saito, Mak A.
Publication type:
Article
Hydrothermal trace metal release and microbial metabolism in the northeastern Lau Basin of the South Pacific Ocean.
Published in:
Biogeosciences, 2021, v. 18, n. 19, p. 5397, doi. 10.5194/bg-18-5397-2021
By:
- Cohen, Natalie R.;
- Noble, Abigail E.;
- Moran, Dawn M.;
- McIlvin, Matthew R.;
- Goepfert, Tyler J.;
- Hawco, Nicholas J.;
- German, Christopher R.;
- Horner, Tristan J.;
- Lamborg, Carl H.;
- McCrow, John P.;
- Allen, Andrew E.;
- Saito, Mak A.
Publication type:
Article
Proteomic analysis of metabolic pathways supports chloroplast–mitochondria cross‐talk in a Cu‐limited diatom.
Published in:
Plant Direct, 2022, v. 6, n. 1, p. 1, doi. 10.1002/pld3.376
By:
- Hippmann, Anna A.;
- Schuback, Nina;
- Moon, Kyung‐Mee;
- McCrow, John P.;
- Allen, Andrew E.;
- Foster, Leonard F.;
- Green, Beverley R.;
- Maldonado, Maria T.
Publication type:
Article
Relating sinking and suspended microbial communities in the California Current Ecosystem: digestion resistance and the contributions of phytoplankton taxa to export.
Published in:
Environmental Microbiology, 2021, v. 23, n. 11, p. 6734, doi. 10.1111/1462-2920.15736
By:
- Valencia, Bellineth;
- Stukel, Michael R.;
- Allen, Andrew E.;
- McCrow, John P.;
- Rabines, Ariel;
- Palenik, Brian;
- Landry, Michael R.
Publication type:
Article
Contrasting effects of copper limitation on the photosynthetic apparatus in two strains of the open ocean diatom Thalassiosira oceanica.
Published in:
PLoS ONE, 2017, v. 12, n. 8, p. 1, doi. 10.1371/journal.pone.0181753
By:
- Hippmann, Anna A.;
- Schuback, Nina;
- Moon, Kyung-Mee;
- McCrow, John P.;
- Allen, Andrew E.;
- Foster, Leonard J.;
- Green, Beverley R.;
- Maldonado, Maria T.
Publication type:
Article
Correction: Transcriptional Orchestration of the Global Cellular Response of a Model Pennate Diatom to Diel Light Cycling under Iron Limitation.
Published in:
2017
By:
- Smith, Sarah R.;
- Gillard, Jeroen T. F.;
- Kustka, Adam B.;
- McCrow, John P.;
- Badger, Jonathan H.;
- Zheng, Hong;
- New, Ashley M.;
- Dupont, Chris L.;
- Obata, Toshihiro;
- Fernie, Alisdair R.;
- Allen, Andrew E.
Publication type:
Correction Notice
Transcriptional Orchestration of the Global Cellular Response of a Model Pennate Diatom to Diel Light Cycling under Iron Limitation.
Published in:
PLoS Genetics, 2016, v. 12, n. 12, p. 1, doi. 10.1371/journal.pgen.1006490
By:
- Smith, Sarah R.;
- Gillard, Jeroen T. F.;
- Kustka, Adam B.;
- McCrow, John P.;
- Badger, Jonathan H.;
- Zheng, Hong;
- New, Ashley M.;
- Dupont, Chris L.;
- Obata, Toshihiro;
- Fernie, Alisdair R.;
- Allen, Andrew E.
Publication type:
Article

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