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- Title
Interactive microbial genome visualization with GView.
- Authors
Petkau, Aaron; Stuart-Edwards, Matthew; Stothard, Paul; Van Domselaar, Gary
- Abstract
Summary: GView is a Java application for viewing and examining prokaryotic genomes in a circular or linear context. It accepts standard sequence file formats and an optional style specification file to generate customizable, publication quality genome maps in bitmap and scalable vector graphics formats. GView features an interactive pan-and-zoom interface, a command-line interface for incorporation in genome analysis pipelines, and a public Application Programming Interface for incorporation in other Java applications.Availability: GView is a freely available application licensed under the GNU Public License. The application, source code, documentation, file specifications, tutorials and image galleries are available at http://gview.caContact: gary.van.domselaar@phac-aspc.gc.ca
- Subjects
MICROBIAL genomes; SVG (Document markup language); MICROBIOLOGY; APPLICATION program interfaces; BIOINFORMATICS; JAVA programming language
- Publication
Bioinformatics, 2010, Vol 26, Issue 24, p3125
- ISSN
1367-4803
- Publication type
Article
- DOI
10.1093/bioinformatics/btq588