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Model-based Inference of a Directed Network of Circadian Neurons.
- Published in:
- Journal of Biological Rhythms, 2018, v. 33, n. 5, p. 515, doi. 10.1177/0748730418790402
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- Publication type:
- Article
Wavelet Measurement Suggests Cause of Period Instability in Mammalian Circadian Neurons.
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- Journal of Biological Rhythms, 2011, v. 26, n. 4, p. 353, doi. 10.1177/0748730411409863
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- Publication type:
- Article
Velocity Response Curves Support the Role of Continuous Entrainment in Circadian Clocks.
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- Journal of Biological Rhythms, 2010, v. 25, n. 2, p. 138, doi. 10.1177/0748730409360949
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- Publication type:
- Article
Multiscale Modeling Meets Machine Learning: What Can We Learn?
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- Archives of Computational Methods in Engineering, 2021, v. 28, n. 3, p. 1017, doi. 10.1007/s11831-020-09405-5
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- Publication type:
- Article
Functional neuronal circuitry and oscillatory dynamics in human brain organoids.
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- Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-32115-4
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- Publication type:
- Article
Core modular blood and brain biomarkers in social defeat mouse model for post traumatic stress disorder.
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- BMC Systems Biology, 2013, v. 7, n. 1, p. 1, doi. 10.1186/1752-0509-7-80
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- Publication type:
- Article
Confidence from uncertainty - A multi-target drug screening method from robust control theory.
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- BMC Systems Biology, 2010, v. 4, p. 161, doi. 10.1186/1752-0509-4-161
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- Article
Algorithms and Software for Stochastic Simulation of Biochemical Reacting Systems.
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- Biotechnology Progress, 2008, v. 24, n. 1, p. 56
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- Publication type:
- Article
Control over single-cell distribution of G1 lengths by WNT governs pluripotency.
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- PLoS Biology, 2019, v. 17, n. 9, p. 1, doi. 10.1371/journal.pbio.3000453
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- Publication type:
- Article
Decision heuristics in contexts integrating action selection and execution.
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- Scientific Reports, 2023, v. 13, n. 1, p. 1, doi. 10.1038/s41598-023-33008-2
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- Publication type:
- Article
Parallel simulation for a fish schooling model on a general-purpose graphics processing unit.
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- Concurrency & Computation: Practice & Experience, 2009, v. 21, n. 6, p. 725, doi. 10.1002/cpe.1330
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- Publication type:
- Article
Model reduction for chemical kinetics: An optimization approach.
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- AIChE Journal, 1999, v. 45, n. 4, p. 869, doi. 10.1002/aic.690450418
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- Publication type:
- Article
High-performance simulation of fracture in idealized ‘brick and mortar’ composites using adaptive Monte Carlo minimization on the GPU.
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- International Journal of High Performance Computing Applications, 2016, v. 30, n. 2, p. 186, doi. 10.1177/1094342015593395
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- Publication type:
- Article
EFFICIENT PARALLELIZATION OF THE STOCHASTIC SIMULATION ALGORITHM FOR CHEMICALLY REACTING SYSTEMS ON THE GRAPHICS PROCESSING UNIT.
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- International Journal of High Performance Computing Applications, 2010, v. 24, n. 2, p. 107, doi. 10.1177/1094342009106066
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- Publication type:
- Article
Epidemiological modeling in StochSS Live!
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- Bioinformatics, 2021, v. 37, n. 17, p. 2787, doi. 10.1093/bioinformatics/btab061
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- Publication type:
- Article
On the Inference of Functional Circadian Networks Using Granger Causality.
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- PLoS ONE, 2015, v. 10, n. 9, p. 1, doi. 10.1371/journal.pone.0137540
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- Publication type:
- Article
How the Spatial Position of Individuals Affects Their Influence on Swarms: A Numerical Comparison of Two Popular Swarm Dynamics Models.
- Published in:
- PLoS ONE, 2013, v. 8, n. 3, p. 1, doi. 10.1371/journal.pone.0058525
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- Publication type:
- Article
Analysis of the role of thrombomodulin in all-trans retinoic acid treatment of coagulation disorders in cancer patients.
- Published in:
- Theoretical Biology & Medical Modelling, 2019, v. 16, n. 1, p. N.PAG, doi. 10.1186/s12976-019-0099-z
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- Publication type:
- Article
Identification of influential proteins in the classical retinoic acid signaling pathway.
- Published in:
- Theoretical Biology & Medical Modelling, 2018, v. 15, n. 1, p. N.PAG, doi. 10.1186/s12976-018-0088-7
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- Publication type:
- Article
Identification of disease states associated with coagulopathy in trauma.
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- BMC Medical Informatics & Decision Making, 2016, v. 16, p. 1, doi. 10.1186/s12911-016-0360-x
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- Publication type:
- Article
Computational Model for Hyperfibrinolytic Onset of Acute Traumatic Coagulopathy.
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- Annals of Biomedical Engineering, 2018, v. 46, n. 8, p. 1173, doi. 10.1007/s10439-018-2031-9
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- Article
Stochastic Simulation of Biochemical Systems: In Memory of Dan T. Gillespie's contributions.
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- 2019
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- Publication type:
- Editorial
The Role of Dimerisation and Nuclear Transport in the Hes1 Gene Regulatory Network.
- Published in:
- Bulletin of Mathematical Biology, 2014, v. 76, n. 4, p. 766, doi. 10.1007/s11538-013-9842-5
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- Publication type:
- Article
GillesPy2: A Biochemical Modeling Framework for Simulation Driven Biological Discovery.
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- Letters in Biomathematics, 2023, v. 10, n. 1, p. 87
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- Publication type:
- Article
Elastic Properties of Novel Co- and CoNi-Based Superalloys Determined through Bayesian Inference and Resonant Ultrasound Spectroscopy.
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- Metallurgical & Materials Transactions. Part A, 2018, v. 49, n. 6, p. 2324, doi. 10.1007/s11661-018-4575-6
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- Publication type:
- Article
Accelerated maximum likelihood parameter estimation for stochastic biochemical systems.
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- BMC Bioinformatics, 2012, v. 13, n. 1, p. 68, doi. 10.1186/1471-2105-13-68
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- Publication type:
- Article
Identification of dynamic mass-action biochemical reaction networks using sparse Bayesian methods.
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- PLoS Computational Biology, 2022, v. 18, n. 1, p. 1, doi. 10.1371/journal.pcbi.1009830
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- Publication type:
- Article
Graph-based semi-supervised learning with genomic data integration using condition-responsive genes applied to phenotype classification.
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- 2018
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- Publication type:
- journal article
Adaptive algorithms for optimal control of time-dependent partial differential-algebraic equation systems.
- Published in:
- International Journal for Numerical Methods in Engineering, 2003, v. 57, n. 10, p. 1457, doi. 10.1002/nme.786
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- Publication type:
- Article
Numerical solution of highly oscillatory ordinary differential equations.
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- Acta Numerica, 1997, v. 6, n. 1, p. 437, doi. 10.1017/S0962492900002750
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- Publication type:
- Article
Computational model of tranexamic acid on urokinase mediated fibrinolysis.
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- PLoS ONE, 2020, v. 15, n. 5, p. 1, doi. 10.1371/journal.pone.0233640
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- Publication type:
- Article
BiP Clustering Facilitates Protein Folding in the Endoplasmic Reticulum.
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- PLoS Computational Biology, 2014, v. 10, n. 7, p. 1, doi. 10.1371/journal.pcbi.1003675
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- Publication type:
- Article
Spatial Stochastic Dynamics Enable Robust Cell Polarization.
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- PLoS Computational Biology, 2013, v. 9, n. 7, p. 1, doi. 10.1371/journal.pcbi.1003139
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- Publication type:
- Article
Integrating machine learning and multiscale modeling—perspectives, challenges, and opportunities in the biological, biomedical, and behavioral sciences.
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- NPJ Digital Medicine, 2019, v. 2, n. 1, p. N.PAG, doi. 10.1038/s41746-019-0193-y
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- Publication type:
- Article
In Silico Identification of Microbial Partners to Form Consortia with Anaerobic Fungi.
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- Processes, 2018, v. 6, n. 1, p. 7, doi. 10.3390/pr6010007
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- Publication type:
- Article
Coordinating cell polarization and morphogenesis through mechanical feedback.
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- PLoS Computational Biology, 2021, v. 17, n. 1, p. 1, doi. 10.1371/journal.pcbi.1007971
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- Publication type:
- Article
Sources of intraspecific variation in the collective tempo and synchrony of ant societies.
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- Behavioral Ecology, 2019, v. 30, n. 6, p. 1682, doi. 10.1093/beheco/arz135
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- Publication type:
- Article
In Silico Identification of Microbial Partners to Form Consortia with Anaerobic Fungi.
- Published in:
- Antioxidants, 2018, v. 7, n. 1, p. 7, doi. 10.3390/pr6010007
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- Publication type:
- Article
Extracellular detection of neuronal coupling.
- Published in:
- Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-94282-6
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- Publication type:
- Article
Regulation of CSF and Brain Tissue Sodium Levels by the Blood-CSF and Blood-Brain Barriers During Migraine.
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- Frontiers in Computational Neuroscience, 2020, v. 14, p. 1, doi. 10.3389/fncom.2020.00004
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- Publication type:
- Article
Stochastic Simulation Service: Bridging the Gap between the Computational Expert and the Biologist.
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- PLoS Computational Biology, 2016, v. 12, n. 12, p. 1, doi. 10.1371/journal.pcbi.1005220
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- Publication type:
- Article
Macromolecular Crowding Regulates the Gene Expression Profile by Limiting Diffusion.
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- PLoS Computational Biology, 2016, v. 12, n. 11, p. 1, doi. 10.1371/journal.pcbi.1005122
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- Publication type:
- Article
A model of macroscale deformation and microvibration in skeletal muscle tissue.
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- Modélisation Mathématique et Analyse Numérique, 2009, v. 43, n. 4, p. 805, doi. 10.1051/m2an/2009030
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- Publication type:
- Article
A positive feedback loop involving the Spa2 SHD domain contributes to focal polarization.
- Published in:
- PLoS ONE, 2022, v. 17, n. 2, p. 1, doi. 10.1371/journal.pone.0263347
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- Publication type:
- Article
Ontogeny of Circadian Rhythms and Synchrony in the Suprachiasmatic Nucleus.
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- Journal of Neuroscience, 2018, v. 38, n. 6, p. 1326, doi. 10.1523/JNEUROSCI.2006-17.2017
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- Publication type:
- Article
Bayesian polynomial neural networks and polynomial neural ordinary differential equations.
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- PLoS Computational Biology, 2024, v. 20, n. 10, p. 1, doi. 10.1371/journal.pcbi.1012414
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- Publication type:
- Article
Stochastic modelling of gene regulatory networks.
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- International Journal of Robust & Nonlinear Control, 2005, v. 15, n. 15, p. 691, doi. 10.1002/rnc.1018
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- Publication type:
- Article
Dynamic Phase Extraction: Applications in Pulse Rate Variability.
- Published in:
- Applied Psychophysiology & Biofeedback, 2022, v. 47, n. 3, p. 213, doi. 10.1007/s10484-022-09549-z
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- Publication type:
- Article
Inferring single-cell gene expression mechanisms using stochastic simulation.
- Published in:
- Bioinformatics, 2015, v. 31, n. 9, p. 1428, doi. 10.1093/bioinformatics/btv007
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- Publication type:
- Article
StochKit2: software for discrete stochastic simulation of biochemical systems with events.
- Published in:
- Bioinformatics, 2011, v. 27, n. 17, p. 2457, doi. 10.1093/bioinformatics/btr401
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- Publication type:
- Article