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Dynamical Boolean Modeling of Immunogenic Cell Death.
- Published in:
- Frontiers in Physiology, 2020, v. 11, p. N.PAG, doi. 10.3389/fphys.2020.590479
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- Publication type:
- Article
DeDaL: Cytoscape 3 app for producing and morphing data-driven and structure-driven network layouts.
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- BMC Systems Biology, 2015, v. 9, n. 1, p. 1, doi. 10.1186/s12918-015-0189-4
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- Article
NaviCell: a web-based environment for navigation, curation and maintenance of large molecular interaction maps.
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- BMC Systems Biology, 2013, v. 7, n. 1, p. 1, doi. 10.1186/1752-0509-7-100
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- Article
BiNoM 2.0, a Cytoscape plugin for accessing and analyzing pathways using standard systems biology formats.
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- BMC Systems Biology, 2013, v. 7, n. 1, p. 1, doi. 10.1186/1752-0509-7-18
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- Article
Continuous time boolean modeling for biological signaling: application of Gillespie algorithm.
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- BMC Systems Biology, 2012, v. 6, n. 1, p. 116, doi. 10.1186/1752-0509-6-116
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- Article
Dynamical modeling of microRNA action on the protein translation process.
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- BMC Systems Biology, 2010, v. 4, p. 13, doi. 10.1186/1752-0509-4-13
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- Article
Regulatory network reconstruction using an integral additive model with flexible kernel functions.
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- BMC Systems Biology, 2008, v. 2, p. 1, doi. 10.1186/1752-0509-2-8
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- Article
Independent Component Analysis for Unraveling the Complexity of Cancer Omics Datasets.
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- International Journal of Molecular Sciences, 2019, v. 20, n. 18, p. 4414, doi. 10.3390/ijms20184414
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- Article
Molecular Inverse Comorbidity between Alzheimer's Disease and Lung Cancer: New Insights from Matrix Factorization.
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- International Journal of Molecular Sciences, 2019, v. 20, n. 13, p. 3114, doi. 10.3390/ijms20133114
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- Article
Author Correction: COVID-19 Disease Map, building a computational repository of SARS-CoV-2 virus-host interaction mechanisms.
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- 2020
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- Correction Notice
COVID-19 Disease Map, building a computational repository of SARS-CoV-2 virus-host interaction mechanisms.
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- Scientific Data, 2020, v. 7, n. 1, p. 1, doi. 10.1038/s41597-020-0477-8
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- Article
Maternal LSD1/KDM1A is an essential regulator of chromatin and transcription landscapes during zygotic genome activation.
- Published in:
- eLife, 2016, p. 1, doi. 10.7554/eLife.08851
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- Article
NaviCell Web Service for network-based data visualization.
- Published in:
- Nucleic Acids Research, 2015, v. 43, n. W1, p. W560, doi. 10.1093/nar/gkv450
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- Article
Systems biology of Ewing sarcoma: a network model of EWS-FLI1 effect on proliferation and apoptosis.
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- Nucleic Acids Research, 2013, v. 41, n. 19, p. 8853, doi. 10.1093/nar/gkt678
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- Publication type:
- Article
Spi-1/PU.1 activates transcription through clustered DNA occupancy in erythroleukemia.
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- Nucleic Acids Research, 2012, v. 40, n. 18, p. 8927, doi. 10.1093/nar/gks659
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- Publication type:
- Article
De novo motif identification improves the accuracy of predicting transcription factor binding sites in ChIP-Seq data analysis.
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- Nucleic Acids Research, 2010, v. 38, n. 11, p. e126, doi. 10.1093/nar/gkq217
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- Article
Frequent genomic structural alterations at HPV insertion sites in cervical carcinoma.
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- Journal of Pathology, 2010, v. 221, n. 3, p. 320, doi. 10.1002/path.2713
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- Article
Beta-catenin status in paediatric medulloblastomas: correlation of immunohistochemical expression with mutational status, genetic profiles, and clinical characteristics.
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- Journal of Pathology, 2009, v. 218, n. 1, p. 86, doi. 10.1002/path.2514
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- Article
Multiscale model of the different modes of cancer cell invasion.
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- Bioinformatics, 2023, v. 39, n. 6, p. 1, doi. 10.1093/bioinformatics/btad374
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- Publication type:
- Article
BIODICA: a computational environment for Independent Component Analysis of omics data.
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- Bioinformatics, 2022, v. 38, n. 10, p. 2963, doi. 10.1093/bioinformatics/btac204
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- Article
Trajectories, bifurcations, and pseudo-time in large clinical datasets: applications to myocardial infarction and diabetes data.
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- GigaScience, 2020, v. 9, n. 11, p. 1, doi. 10.1093/gigascience/giaa128
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- Article
Stability-Based Comparison of Class Discovery Methods for DNA Copy Number Profiles.
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- PLoS ONE, 2013, v. 8, n. 12, p. 1, doi. 10.1371/journal.pone.0081458
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- Article
Breakpoint Features of Genomic Rearrangements in Neuroblastoma with Unbalanced Translocations and Chromothripsis.
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- PLoS ONE, 2013, v. 8, n. 8, p. 1, doi. 10.1371/journal.pone.0072182
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- Publication type:
- Article
TTK/hMPS1 Is an Attractive Therapeutic Target for Triple-Negative Breast Cancer
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- PLoS ONE, 2013, v. 8, n. 5, p. 1, doi. 10.1371/journal.pone.0063712
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- Article
Antagonism Pattern Detection between MicroRNA and Target Expression in Ewing's Sarcoma.
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- PLoS ONE, 2012, v. 7, n. 7, p. 1, doi. 10.1371/journal.pone.0041770
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- Article
NormaCurve: A SuperCurve-Based Method That Simultaneously Quantifies and Normalizes Reverse Phase Protein Array Data.
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- PLoS ONE, 2012, v. 7, n. 6, p. 1, doi. 10.1371/journal.pone.0038686
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- Publication type:
- Article
Deep-Sequencing Protocols Influence the Results Obtained in Small-RNA Sequencing.
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- PLoS ONE, 2012, v. 7, n. 2, p. 1, doi. 10.1371/journal.pone.0032724
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- Article
The Oncogenic EWS-FLI1 Protein Binds In Vivo GGAA Microsatellite Sequences with Potential Transcriptional Activation Function.
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- PLoS ONE, 2009, v. 4, n. 3, p. 1, doi. 10.1371/journal.pone.0004932
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- Publication type:
- Article
Maboss for HPC environments: implementations of the continuous time Boolean model simulator for large CPU clusters and GPU accelerators.
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- BMC Bioinformatics, 2024, v. 25, n. 1, p. 1, doi. 10.1186/s12859-024-05815-5
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- Publication type:
- Article
myProMS, a web server for management and validation of mass spectrometry-based proteomic data.
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- Proteomics, 2007, v. 7, n. 15, p. 2553, doi. 10.1002/pmic.200600784
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- Publication type:
- Article
High-Resolution Mapping of DNA Breakpoints to Define True Recurrences Among Ipsilateral Breast Cancers.
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- JNCI: Journal of the National Cancer Institute, 2008, v. 100, n. 1, p. 48, doi. 10.1093/jnci/djm266
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- Article
Patient-specific Boolean models of signalling networks guide personalised treatments.
- Published in:
- eLife, 2022, p. 1, doi. 10.7554/eLife.72626
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- Article
ROMA: Representation and Quantification of Module Activity from Target Expression Data.
- Published in:
- Frontiers in Genetics, 2016, p. 1, doi. 10.3389/fgene.2016.00018
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- Article
A multiscale signalling network map of innate immune response in cancer reveals cell heterogeneity signatures.
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- Nature Communications, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41467-019-12270-x
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- Article
Identification of Interpretable Clusters and Associated Signatures in Breast Cancer Single-Cell Data: A Topic Modeling Approach.
- Published in:
- Cancers, 2024, v. 16, n. 7, p. 1350, doi. 10.3390/cancers16071350
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- Article
Network-Based Integration of Multi-Omics Data Identifies the Determinants of miR-491-5p Effects.
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- Cancers, 2021, v. 13, n. 16, p. 3970, doi. 10.3390/cancers13163970
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- Article
Modelling of Immune Checkpoint Network Explains Synergistic Effects of Combined Immune Checkpoint Inhibitor Therapy and the Impact of Cytokines in Patient Response.
- Published in:
- Cancers, 2020, v. 12, n. 12, p. 3600, doi. 10.3390/cancers12123600
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- Article
Comprehensive Map of the Regulated Cell Death Signaling Network: A Powerful Analytical Tool for Studying Diseases.
- Published in:
- Cancers, 2020, v. 12, n. 4, p. 990, doi. 10.3390/cancers12040990
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- Article
Signalling maps in cancer research: construction and data analysis.
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- Database: The Journal of Biological Databases & Curation, 2018, v. 2018, p. 1, doi. 10.1093/database/bay036
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- Publication type:
- Article
NaviCom: a web application to create interactive molecular network portraits using multi-level omics data.
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- Database: The Journal of Biological Databases & Curation, 2017, v. 2017, n. 1, p. 1, doi. 10.1093/database/bax026
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- Publication type:
- Article
Streamlined ion torrent PGM-based diagnostics: BRCA1 and BRCA2 genes as a model.
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- European Journal of Human Genetics, 2014, v. 22, n. 4, p. 535, doi. 10.1038/ejhg.2013.181
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- Article
Asf1b, the necessary Asf1 isoform for proliferation, is predictive of outcome in breast cancer.
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- EMBO Journal, 2011, v. 30, n. 3, p. 480, doi. 10.1038/emboj.2010.335
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- Publication type:
- Article
CAPweb: a bioinformatics CGH array Analysis Platform.
- Published in:
- Nucleic Acids Research, 2006, v. 34, n. 11, p. w477, doi. 10.1093/nar/gkl215
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- Publication type:
- Article
ITTACA: a new database for integrated tumor transcriptome array and clinical data analysis.
- Published in:
- Nucleic Acids Research, 2006, v. 34, n. suppl 1, p. d613, doi. 10.1093/nar/gkj022
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- Publication type:
- Article
The GENETPIG database: a tool for comparative mapping in pig (Sus scrofa).
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- Nucleic Acids Research, 2003, v. 31, n. 1, p. 138, doi. 10.1093/nar/gkg061
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- Article
GénoPlante-Info (GPI): a collection of databases and bioinformatics resources for plant genomics.
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- Nucleic Acids Research, 2003, v. 31, n. 1, p. 179, doi. 10.1093/nar/gkg060
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- Article
DBcat: a catalog of 500 biological databases.
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- Nucleic Acids Research, 2000, v. 28, n. 1, p. 8, doi. 10.1093/nar/28.1.8
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- Article
Virgil database for rich links (1999 update).
- Published in:
- Nucleic Acids Research, 1999, v. 27, n. 1, p. 113, doi. 10.1093/nar/27.1.113
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- Article
The HuGeMap Database: interconnection and visualization of human genome maps.
- Published in:
- Nucleic Acids Research, 1999, v. 27, n. 1, p. 119, doi. 10.1093/nar/27.1.119
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- Publication type:
- Article
DBcat: a catalog of biological databases.
- Published in:
- Nucleic Acids Research, 1999, v. 27, n. 1, p. 10, doi. 10.1093/nar/27.1.10
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- Publication type:
- Article