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Positive Selection during Niche Adaptation Results in Large-Scale and Irreversible Rearrangement of Chromosomal Gene Order in Bacteria.
Published in:
Molecular Biology & Evolution, 2022, v. 39, n. 4, p. 1, doi. 10.1093/molbev/msac069
By:
- Cao, Sha;
- Brandis, Gerrit;
- Huseby, Douglas L.;
- Hughes, Diarmaid
Publication type:
Article
Genetic Diversity, Heteroplasmy, and Recombination in Mitochondrial Genomes of Daphnia pulex, Daphnia pulicaria, and Daphnia obtusa.
Published in:
Molecular Biology & Evolution, 2022, v. 39, n. 4, p. 1, doi. 10.1093/molbev/msac059
By:
- Ye, Zhiqiang;
- Zhao, Chaoxian;
- Raborn, R. Taylor;
- Lin, Man;
- Wei, Wen;
- Hao, Yue;
- Lynch, Michael
Publication type:
Article
Paleozoic Protein Fossils Illuminate the Evolution of Vertebrate Genomes and Transposable Elements.
Published in:
Molecular Biology & Evolution, 2022, v. 39, n. 4, p. 1, doi. 10.1093/molbev/msac068
By:
- Frith, Martin C.
Publication type:
Article
Gattaca: Base-Pair Resolution Mutation Tracking for Somatic Evolution Studies using Agent-based Models.
Published in:
Molecular Biology & Evolution, 2022, v. 39, n. 4, p. 1, doi. 10.1093/molbev/msac058
By:
- Schenck, Ryan O.;
- Brosula, Gabriel;
- West, Jeffrey;
- Leedham, Simon;
- Shibata, Darryl;
- Anderson, Alexander R.A.
Publication type:
Article
Different Genes are Recruited During Convergent Evolution of Pregnancy and the Placenta.
Published in:
Molecular Biology & Evolution, 2022, v. 39, n. 4, p. 1, doi. 10.1093/molbev/msac077
By:
- Foster, Charles S.P.;
- Dyke, James U. Van;
- Thompson, Michael B.;
- Smith, Nicholas M.A.;
- Simpfendorfer, Colin A.;
- Murphy, Christopher R.;
- Whittington, Camilla M.
Publication type:
Article
Lifestyle Transitions in Fusarioid Fungi are Frequent and Lack Clear Genomic Signatures.
Published in:
Molecular Biology & Evolution, 2022, v. 39, n. 4, p. 1, doi. 10.1093/molbev/msac085
By:
- Hill, Rowena;
- Buggs, Richard J.A.;
- Vu, Dang Toan;
- Gaya, Ester
Publication type:
Article
Venom Gene Sequence Diversity and Expression Jointly Shape Diet Adaptation in Pitvipers.
Published in:
Molecular Biology & Evolution, 2022, v. 39, n. 4, p. 1, doi. 10.1093/molbev/msac082
By:
- Mason, Andrew J.;
- Holding, Matthew L.;
- Rautsaw, Rhett M.;
- Rokyta, Darin R.;
- Parkinson, Christopher L.;
- Gibbs, H. Lisle
Publication type:
Article
Rates of Mutations and Transcript Errors in the Foodborne Pathogen Salmonella enterica subsp. enterica.
Published in:
Molecular Biology & Evolution, 2022, v. 39, n. 4, p. 1, doi. 10.1093/molbev/msac081
By:
- Pan, Jiao;
- Li, Weiyi;
- Ni, Jiahao;
- Wu, Kun;
- Konigsberg, Iain;
- Rivera, Caitlyn E.;
- Tincher, Clayton;
- Gregory, Colin;
- Zhou, Xia;
- Doak, Thomas G.;
- Lee, Heewook;
- Wang, Yan;
- Gao, Xiang;
- Lynch, Michael;
- Long, Hongan
Publication type:
Article
Tempo of Degeneration Across Independently Evolved Nonrecombining Regions.
Published in:
Molecular Biology & Evolution, 2022, v. 39, n. 4, p. 1, doi. 10.1093/molbev/msac060
By:
- Carpentier, Fantin;
- Vega, Ricardo C. Rodríguez de la;
- Jay, Paul;
- Duhamel, Marine;
- Shykoff, Jacqui A.;
- Perlin, Michael H.;
- Wallen, R. Margaret;
- Hood, Michael E.;
- Giraud, Tatiana
Publication type:
Article
Disentangling Signatures of Selection Before and After European Colonization in Latin Americans.
Published in:
Molecular Biology & Evolution, 2022, v. 39, n. 4, p. 1, doi. 10.1093/molbev/msac076
By:
- Mendoza-Revilla, Javier;
- Chacón-Duque, J. Camilo;
- Fuentes-Guajardo, Macarena;
- Ormond, Louise;
- Wang, Ke;
- Hurtado, Malena;
- Villegas, Valeria;
- Granja, Vanessa;
- Acuña-Alonzo, Victor;
- Jaramillo, Claudia;
- Arias, William;
- Barquera, Rodrigo;
- Gómez-Valdés, Jorge;
- Villamil-Ramírez, Hugo;
- Cerqueira, Caio C. Silva de;
- Rivera, Keyla M. Badillo;
- Nieves-Colón, Maria A.;
- Gignoux, Christopher R.;
- Wojcik, Genevieve L.;
- Moreno-Estrada, Andrés
Publication type:
Article
Reconstructing the Origins of the Somatostatin and Allatostatin-C Signaling Systems Using the Accelerated Evolution of Biodiverse Cone Snail Toxins.
Published in:
Molecular Biology & Evolution, 2022, v. 39, n. 4, p. 1, doi. 10.1093/molbev/msac075
By:
- Koch, Thomas Lund;
- Ramiro, Iris Bea L.;
- Salcedo, Paula Flórez;
- Engholm, Ebbe;
- Jensen, Knud Jørgen;
- Chase, Kevin;
- Olivera, Baldomero M.;
- Bjørn-Yoshimoto, Walden Emil;
- Safavi-Hemami, Helena
Publication type:
Article
Global Patterns of Subgenome Evolution in Organelle-Targeted Genes of Six Allotetraploid Angiosperms.
Published in:
Molecular Biology & Evolution, 2022, v. 39, n. 4, p. 1, doi. 10.1093/molbev/msac074
By:
- Sharbrough, Joel;
- Conover, Justin L.;
- Gyorfy, Matheus Fernandes;
- Grover, Corrinne E.;
- Miller, Emma R.;
- Wendel, Jonathan F.;
- Sloan, Daniel B.
Publication type:
Article
Challenging Ancient DNA Results About Putative HLA Protection or Susceptibility to Yersinia pestis.
Published in:
Molecular Biology & Evolution, 2022, v. 39, n. 4, p. 1, doi. 10.1093/molbev/msac073
By:
- Di, Da;
- Thomas, Jeanne Simon;
- Currat, Mathias;
- Nunes, José Manuel;
- Sanchez-Mazas, Alicia
Publication type:
Article
Detection of F1 Hybrids from Single-genome Data Reveals Frequent Hybridization in Hymenoptera and Particularly Ants.
Published in:
Molecular Biology & Evolution, 2022, v. 39, n. 4, p. 1, doi. 10.1093/molbev/msac071
By:
- Weyna, Arthur;
- Bourouina, Lucille;
- Galtier, Nicolas;
- Romiguier, Jonathan
Publication type:
Article
Multiple Profile Models Extract Features from Protein Sequence Data and Resolve Functional Diversity of Very Different Protein Families.
Published in:
Molecular Biology & Evolution, 2022, v. 39, n. 4, p. 1, doi. 10.1093/molbev/msac070
By:
- Vicedomini, R.;
- Bouly, J.P.;
- Laine, E.;
- Falciatore, A.;
- Carbone, A.
Publication type:
Article
Enigmatic Stramenopile Sheds Light on Early Evolution in Ochrophyta Plastid Organellogenesis.
Published in:
Molecular Biology & Evolution, 2022, v. 39, n. 4, p. 1, doi. 10.1093/molbev/msac065
By:
- Azuma, Tomonori;
- Pánek, Tomáš;
- Tice, Alexander K.;
- Kayama, Motoki;
- Kobayashi, Mayumi;
- Miyashita, Hideaki;
- Suzaki, Toshinobu;
- Yabuki, Akinori;
- Brown, Matthew W.;
- Kamikawa, Ryoma
Publication type:
Article
Extremely Streamlined Macronuclear Genome in the Free-Living Protozoan Fabrea salina.
Published in:
Molecular Biology & Evolution, 2022, v. 39, n. 4, p. 1, doi. 10.1093/molbev/msac062
By:
- Zhang, Bing;
- Hou, Lina;
- Qi, Hongli;
- Hou, Lingling;
- Zhang, Tiancheng;
- Zhao, Fangqing;
- Miao, Miao
Publication type:
Article
Multiple Mechanisms of Photoreceptor Spectral Tuning in Heliconius Butterflies.
Published in:
Molecular Biology & Evolution, 2022, v. 39, n. 4, p. 1, doi. 10.1093/molbev/msac067
By:
- McCulloch, Kyle J.;
- Macias-Muñoz, Aide;
- Mortazavi, Ali;
- Briscoe, Adriana D.
Publication type:
Article
De Novo Assembly of 20 Chicken Genomes Reveals the Undetectable Phenomenon for Thousands of Core Genes on Microchromosomes and Subtelomeric Regions.
Published in:
Molecular Biology & Evolution, 2022, v. 39, n. 4, p. 1, doi. 10.1093/molbev/msac066
By:
- Li, Ming;
- Sun, Congjiao;
- Xu, Naiyi;
- Bian, Peipei;
- Tian, Xiaomeng;
- Wang, Xihong;
- Wang, Yuzhe;
- Jia, Xinzheng;
- Heller, Rasmus;
- Wang, Mingshan;
- Wang, Fei;
- Dai, Xuelei;
- Luo, Rongsong;
- Guo, Yingwei;
- Wang, Xiangnan;
- Yang, Peng;
- Hu, Dexiang;
- Liu, Zhenyu;
- Fu, Weiwei;
- Zhang, Shunjin
Publication type:
Article
Species Persistence with Hybridization in Toad-Headed Lizards Driven by Divergent Selection and Low Recombination.
Published in:
Molecular Biology & Evolution, 2022, v. 39, n. 4, p. 1, doi. 10.1093/molbev/msac064
By:
- Gao, Wei;
- Yu, Chuan-Xin;
- Zhou, Wei-Wei;
- Zhang, Bao-Lin;
- Chambers, E. Anne;
- Dahn, Hollis A.;
- Jin, Jie-Qiong;
- Murphy, Robert W.;
- Zhang, Ya-Ping;
- Che, Jing
Publication type:
Article
Structural Determinants of Intra-Protein Compensatory Substitutions.
Published in:
Molecular Biology & Evolution, 2022, v. 39, n. 4, p. 1, doi. 10.1093/molbev/msac063
By:
- Chaurasia, Shilpi;
- Dutheil, Julien Y.
Publication type:
Article
Phylogeny-Aware Chemoinformatic Analysis of Chemical Diversity in Lamiaceae Enables Iridoid Pathway Assembly and Discovery of Aucubin Synthase.
Published in:
Molecular Biology & Evolution, 2022, v. 39, n. 4, p. 1, doi. 10.1093/molbev/msac057
By:
- Rodríguez-López, Carlos E.;
- Jiang, Yindi;
- Kamileen, Mohamed O.;
- Lichman, Benjamin R.;
- Hong, Benke;
- Vaillancourt, Brieanne;
- Buell, C. Robin;
- O'Connor, Sarah E.
Publication type:
Article
Selection Analysis Identifies Clusters of Unusual Mutational Changes in Omicron Lineage BA.1 That Likely Impact Spike Function.
Published in:
Molecular Biology & Evolution, 2022, v. 39, n. 4, p. 1, doi. 10.1093/molbev/msac061
By:
- Martin, Darren P.;
- Lytras, Spyros;
- Lucaci, Alexander G.;
- Maier, Wolfgang;
- Grüning, Björn;
- Shank, Stephen D.;
- Weaver, Steven;
- MacLean, Oscar A.;
- Orton, Richard J.;
- Lemey, Philippe;
- Boni, Maciej F.;
- Tegally, Houriiyah;
- Harkins, Gordon W.;
- Scheepers, Cathrine;
- Bhiman, Jinal N.;
- Everatt, Josie;
- Amoako, Daniel G.;
- San, James Emmanuel;
- Giandhari, Jennifer;
- Sigal, Alex
Publication type:
Article
Gene Regulatory Networks of Epidermal and Neural Fate Choice in a Chordate.
Published in:
Molecular Biology & Evolution, 2022, v. 39, n. 4, p. 1, doi. 10.1093/molbev/msac055
By:
- Leon, Anthony;
- Subirana, Lucie;
- Magre, Kevin;
- Cases, Ildefonso;
- Tena, Juan J.;
- Irimia, Manuel;
- Gomez-Skarmeta, Jose Luis;
- Escriva, Hector;
- Bertrand, Stéphanie
Publication type:
Article
Global Population Genomics of Two Subspecies of Cryptosporidium hominis during 500 Years of Evolution.
Published in:
Molecular Biology & Evolution, 2022, v. 39, n. 4, p. 1, doi. 10.1093/molbev/msac056
By:
- Tichkule, Swapnil;
- Cacciò, Simone M.;
- Robinson, Guy;
- Chalmers, Rachel M.;
- Mueller, Ivo;
- Emery-Corbin, Samantha J.;
- Eibach, Daniel;
- Tyler, Kevin M.;
- Oosterhout, Cock van;
- Jex, Aaron R.
Publication type:
Article
Looking through the Lens of the Ribosome Biogenesis Evolutionary History: Possible Implications for Archaeal Phylogeny and Eukaryogenesis.
Published in:
Molecular Biology & Evolution, 2022, v. 39, n. 4, p. 1, doi. 10.1093/molbev/msac054
By:
- Jüttner, Michael;
- Ferreira-Cerca, Sébastien
Publication type:
Article
Canalization of the Polygenic Risk for Common Diseases and Traits in the UK Biobank Cohort.
Published in:
Molecular Biology & Evolution, 2022, v. 39, n. 4, p. 1, doi. 10.1093/molbev/msac053
By:
- Nagpal, Sini;
- Tandon, Raghav;
- Gibson, Greg
Publication type:
Article
Geography-Dependent Horizontal Gene Transfer from Vertebrate Predators to Their Prey.
Published in:
Molecular Biology & Evolution, 2022, v. 39, n. 4, p. 1, doi. 10.1093/molbev/msac052
By:
- Kambayashi, Chiaki;
- Kakehashi, Ryosuke;
- Sato, Yusuke;
- Mizuno, Hideaki;
- Tanabe, Hideyuki;
- Rakotoarison, Andolalao;
- Künzel, Sven;
- Furuno, Nobuaki;
- Ohshima, Kazuhiko;
- Kumazawa, Yoshinori;
- Nagy, Zoltán T.;
- Mori, Akira;
- Allison, Allen;
- Donnellan, Stephen C.;
- Ota, Hidetoshi;
- Hoso, Masaki;
- Yanagida, Tetsuya;
- Sato, Hiroshi;
- Vences, Miguel;
- Kurabayashi, Atsushi
Publication type:
Article
Premetazoan Origin of Neuropeptide Signaling.
Published in:
Molecular Biology & Evolution, 2022, v. 39, n. 4, p. 1, doi. 10.1093/molbev/msac051
By:
- Yañez-Guerra, Luis Alfonso;
- Thiel, Daniel;
- Jékely, Gáspár
Publication type:
Article
Quantitative Lipidomics and Spatial MS-Imaging Uncovered Neurological and Systemic Lipid Metabolic Pathways Underlying Troglomorphic Adaptations in Cave-Dwelling Fish.
Published in:
Molecular Biology & Evolution, 2022, v. 39, n. 4, p. 1, doi. 10.1093/molbev/msac050
By:
- Lam, Sin Man;
- Li, Jie;
- Sun, Huan;
- Mao, Weining;
- Lu, Zongmin;
- Zhao, Qingshuo;
- Han, Chao;
- Gong, Xia;
- Jiang, Binhua;
- Chua, Gek Huey;
- Zhao, Zhenwen;
- Meng, Fanwei;
- Shui, Guanghou
Publication type:
Article

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