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Nearshore Pelagic Microbial Community Abundance Affects Recruitment Success of Giant Kelp, Macrocystis pyrifera.
Published in:
Frontiers in Microbiology, 2016, v. 7, p. 1, doi. 10.3389/fmicb.2016.01800
By:
- Morris, Megan M.;
- Haggerty, John M.;
- Papudeshi, Bhavya N.;
- Vega, Alejandro A.;
- Edwards, Matthew S.;
- Dinsdale, Elizabeth A.
Publication type:
Article
The skin microbiome of the common thresher shark ( Alopias vulpinus) has low taxonomic and gene function β-diversity.
Published in:
Environmental Microbiology Reports, 2017, v. 9, n. 4, p. 357, doi. 10.1111/1758-2229.12537
By:
- Doane, Michael P.;
- Haggerty, John Matthew;
- Kacev, Dovi;
- Papudeshi, Bhavya;
- Dinsdale, Elizabeth A.
Publication type:
Article
Coral and Seawater Metagenomes Reveal Key Microbial Functions to Coral Health and Ecosystem Functioning Shaped at Reef Scale.
Published in:
Microbial Ecology, 2023, v. 86, n. 1, p. 392, doi. 10.1007/s00248-022-02094-6
By:
- Lima, Laís F. O.;
- Alker, Amanda T.;
- Papudeshi, Bhavya;
- Morris, Megan M.;
- Edwards, Robert A.;
- de Putron, Samantha J.;
- Dinsdale, Elizabeth A.
Publication type:
Article
Phables: from fragmented assemblies to high-quality bacteriophage genomes.
Published in:
Bioinformatics, 2023, v. 39, n. 10, p. 1, doi. 10.1093/bioinformatics/btad586
By:
- Mallawaarachchi, Vijini;
- Roach, Michael J;
- Decewicz, Przemyslaw;
- Papudeshi, Bhavya;
- Giles, Sarah K;
- Grigson, Susanna R;
- Bouras, George;
- Hesse, Ryan D;
- Inglis, Laura K;
- Hutton, Abbey L K;
- Dinsdale, Elizabeth A;
- Edwards, Robert A
Publication type:
Article
The human gut virome: composition, colonization, interactions, and impacts on human health.
Published in:
Frontiers in Microbiology, 2023, p. 1, doi. 10.3389/fmicb.2023.963173
By:
- Pargin, Evan;
- Roach, Michael J.;
- Skye, Amber;
- Papudeshi, Bhavya;
- Inglis, Laura K.;
- Mallawaarachchi, Vijini;
- Grigson, Susanna R.;
- Harker, Clarice;
- Edwards, Robert A.;
- Giles, Sarah K.
Publication type:
Article
Stingray epidermal microbiomes are species-specific with local adaptations.
Published in:
Frontiers in Microbiology, 2023, v. 14, p. 1, doi. 10.3389/fmicb.2023.1031711
By:
- Kerr, Emma N.;
- Papudeshi, Bhavya;
- Haggerty, Miranda;
- Wild, Natasha;
- Goodman, Asha Z.;
- Lima, Lais F. O.;
- Hesse, Ryan D.;
- Skye, Amber;
- Mallawaarachchi, Vijini;
- Johri, Shaili;
- Parker, Sophia;
- Dinsdale, Elizabeth A.
Publication type:
Article
Ten simple rules and a template for creating workflows-as-applications.
Published in:
PLoS Computational Biology, 2022, v. 18, n. 12, p. 1, doi. 10.1371/journal.pcbi.1010705
By:
- Roach, Michael J.;
- Pierce-Ward, N. Tessa;
- Suchecki, Radoslaw;
- Mallawaarachchi, Vijini;
- Papudeshi, Bhavya;
- Handley, Scott A.;
- Brown, C. Titus;
- Watson-Haigh, Nathan S.;
- Edwards, Robert A.
Publication type:
Article
Epidermal Microbiomes of Leopard Sharks (Triakis semifasciata) Are Consistent across Captive and Wild Environments.
Published in:
Microorganisms, 2022, v. 10, n. 10, p. 2081, doi. 10.3390/microorganisms10102081
By:
- Goodman, Asha Z.;
- Papudeshi, Bhavya;
- Doane, Michael P.;
- Mora, Maria;
- Kerr, Emma;
- Torres, Melissa;
- Nero Moffatt, Jennifer;
- Lima, Lais;
- Nosal, Andrew P.;
- Dinsdale, Elizabeth
Publication type:
Article
The StkSR Two-Component System Influences Colistin Resistance in Acinetobacter baumannii.
Published in:
Microorganisms, 2022, v. 10, n. 5, p. 985, doi. 10.3390/microorganisms10050985
By:
- Giles, Sarah K.;
- Stroeher, Uwe H.;
- Papudeshi, Bhavya;
- Edwards, Robert A.;
- Carlson-Jones, Jessica AP.;
- Roach, Michael;
- Brown, Melissa H.
Publication type:
Article
Solving genomic puzzles: computational methods for metagenomic binning.
Published in:
Briefings in Bioinformatics, 2024, v. 25, n. 5, p. 1, doi. 10.1093/bib/bbae372
By:
- Mallawaarachchi, Vijini;
- Wickramarachchi, Anuradha;
- Xue, Hansheng;
- Papudeshi, Bhavya;
- Grigson, Susanna R;
- Bouras, George;
- Prahl, Rosa E;
- Kaphle, Anubhav;
- Verich, Andrey;
- Talamantes-Becerra, Berenice;
- Dinsdale, Elizabeth A;
- Edwards, Robert A
Publication type:
Article
Phage Diving: An Exploration of the Carcharhinid Shark Epidermal Virome.
Published in:
Viruses (1999-4915), 2022, v. 14, n. 9, p. 1969, doi. 10.3390/v14091969
By:
- Hesse, Ryan D.;
- Roach, Michael;
- Kerr, Emma N.;
- Papudeshi, Bhavya;
- Lima, Laís F. O.;
- Goodman, Asha Z.;
- Hoopes, Lisa;
- Scott, Mark;
- Meyer, Lauren;
- Huveneers, Charlie;
- Dinsdale, Elizabeth A.
Publication type:
Article
Optimizing and evaluating the reconstruction of Metagenome-assembled microbial genomes.
Published in:
BMC Genomics, 2017, v. 18, p. 1, doi. 10.1186/s12864-017-4294-1
By:
- Papudeshi, Bhavya;
- Haggerty, J. Matthew;
- Doane, Michael;
- Morris, Megan M.;
- Walsh, Kevin;
- Beattie, Douglas T.;
- Pande, Dnyanada;
- Zaeri, Parisa;
- Silva, Genivaldo G. Z.;
- Thompson, Fabiano;
- Edwards, Robert A.;
- Dinsdale, Elizabeth A.
Publication type:
Article
Knowing and Naming: Phage Annotation and Nomenclature for Phage Therapy.
Published in:
Clinical Infectious Diseases, 2023, v. 77, p. S352, doi. 10.1093/cid/ciad539
By:
- Grigson, Susanna R;
- Giles, Sarah K;
- Edwards, Robert A;
- Papudeshi, Bhavya
Publication type:
Article
The skin microbiome of elasmobranchs follows phylosymbiosis, but in teleost fishes, the microbiomes converge.
Published in:
Microbiome, 2020, v. 8, n. 1, p. 1, doi. 10.1186/s40168-020-00840-x
By:
- Doane, Michael P.;
- Morris, Megan M.;
- Papudeshi, Bhavya;
- Allen, Lauren;
- Pande, Dnyanada;
- Haggerty, John M.;
- Johri, Shaili;
- Turnlund, Abigail C.;
- Peterson, Meredith;
- Kacev, Dovi;
- Nosal, Andy;
- Ramirez, Deni;
- Hovel, Kevin;
- Ledbetter, Julia;
- Alker, Amanda;
- Avalos, Jackeline;
- Baker, Kristi;
- Bhide, Shruti;
- Billings, Emma;
- Byrum, Steven
Publication type:
Article
Emergent community architecture despite distinct diversity in the global whale shark (Rhincodon typus) epidermal microbiome.
Published in:
Scientific Reports, 2023, v. 13, n. 1, p. 1, doi. 10.1038/s41598-023-39184-5
By:
- Doane, Michael P.;
- Reed, Michael B.;
- McKerral, Jody;
- Farias Oliveira Lima, Laís;
- Morris, Megan;
- Goodman, Asha Z.;
- Johri, Shaili;
- Papudeshi, Bhavya;
- Dillon, Taylor;
- Turnlund, Abigail C.;
- Peterson, Meredith;
- Mora, Maria;
- de la Parra Venegas, Rafael;
- Pillans, Richard;
- Rohner, Christoph A.;
- Pierce, Simon J.;
- Legaspi, Christine G.;
- Araujo, Gonzalo;
- Ramirez-Macias, Deni;
- Edwards, Robert A.
Publication type:
Article

Found: 15