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The Effects of Flexibility on dsDNA–dsDNA Interactions.
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- Life (2075-1729), 2022, v. 12, n. 5, p. 699, doi. 10.3390/life12050699
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- Article
Influence of DNA sequence on the structure of minicircles under torsional stress.
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- Nucleic Acids Research, 2017, v. 45, n. 13, p. 7633, doi. 10.1093/nar/gkx516
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- Article
Physico-chemical foundations underpinning microarray and next-generation sequencing experiments.
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- Nucleic Acids Research, 2013, v. 41, n. 5, p. 2779, doi. 10.1093/nar/gks1358
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- Article
In the absence of writhe, DNA relieves torsional stress with localized, sequence-dependent structural failure to preserve B-form.
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- Nucleic Acids Research, 2009, v. 37, n. 16, p. 5568, doi. 10.1093/nar/gkp556
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- Article
AUTOMATIC GENERATION OF FFT FOR TRANSLATIONS OF MULTIPOLE EXPANSIONS IN SPHERICAL HARMONICS.
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- International Journal of High Performance Computing Applications, 2008, v. 22, n. 2, p. 219, doi. 10.1177/1094342008090915
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- Article
Molecular Dynamics At a Constant pH.
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- International Journal of High Performance Computing Applications, 1994, v. 8, n. 1, p. 47, doi. 10.1177/109434209400800106
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- Article
Secondary Analysis of the NCI-60 Whole Exome Sequencing Data Indicates Significant Presence of Propionibacterium acnes Genomic Material in Leukemia (RPMI-8226) and Central Nervous System (SF-295, SF-539, and SNB-19) Cell Lines.
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- PLoS ONE, 2015, v. 10, n. 6, p. 1, doi. 10.1371/journal.pone.0127799
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- Article
Trimethylamine N-oxide influence on the backbone of proteins: An oligoglycine model.
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- Proteins, 2010, v. 78, n. 3, p. 695, doi. 10.1002/prot.22598
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- Article
Solvent participation in Serratia marcescens endonuclease complexes.
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- Proteins, 2006, v. 62, n. 4, p. 982, doi. 10.1002/prot.20694
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- Article
A simple two-dimensional representation for the common secondary structural elements of polypeptides and proteins.
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- Proteins, 1997, v. 27, n. 2, p. 227, doi. 10.1002/(SICI)1097-0134(19970201)27:2<227::AID-PROT9>3.0.CO;2-C
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- Article
Transition Mutations in the hTERT Promoter Are Unrelated to Potential i-motif Formation in the C-Rich Strand.
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- Biomolecules (2218-273X), 2023, v. 13, n. 9, p. 1308, doi. 10.3390/biom13091308
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- Article
THE MELTING MECHANISM OF DNA TETHERED TO A SURFACE.
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- International Journal of Numerical Analysis & Modeling, 2009, v. 6, n. 3, p. 474
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- Article
Theoretical compton profile anisotropics in molecules and solids. VIII. Vibrational, rotational, and temperature-dependent diatomic alkali halide anisotropics.
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- International Journal of Quantum Chemistry, 1980, v. 18, p. 697, doi. 10.1002/qua.560180871
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- Article
Reconstructing the protein-water interface.
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- Biopolymers, 1998, v. 45, n. 7, p. 469, doi. 10.1002/(SICI)1097-0282(199806)45:7<469::AID-BIP1>3.0.CO;2-M
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- Article
Modeling the DNA-solvent interface.
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- Biopolymers, 1997, v. 41, n. 1, p. 107, doi. 10.1002/(SICI)1097-0282(199701)41:1<107::AID-BIP10>3.0.CO;2-L
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- Article
Conformational states governing the rates of spontaneous transition mutations.
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- Biopolymers, 1995, v. 36, n. 2, p. 169, doi. 10.1002/bip.360360206
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- Article
Solvent effects on model d(CG·G)<sub>7</sub> and d(TA·T)<sub>7</sub> DNA triple helices.
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- Biopolymers, 1995, v. 35, n. 5, p. 457, doi. 10.1002/bip.360350505
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- Article
Molecular recognition of watson-crick base-pair reversals in triple-helix formation: Use of nonnatural oligonucleotide bases.
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- Biopolymers, 1993, v. 33, n. 9, p. 1317, doi. 10.1002/bip.360330902
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- Article
Amino acid side-chain populations in aqueous and saline solution: Bis-penicillamine enkephalin.
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- Biopolymers, 1992, v. 32, n. 12, p. 1623, doi. 10.1002/bip.360321205
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- Article
A study of model energetics and conformational properties of polynucleotide triplexes.
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- Biopolymers, 1990, v. 30, n. 5/6, p. 517, doi. 10.1002/bip.360300505
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- Article
Conformations of the glycine dipeptide.
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- Biopolymers, 1987, v. 26, n. 11, p. 1817, doi. 10.1002/bip.360261102
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- Article
Distribution function implied dynamics versus residence times and correlations: Solvation shells of myoglobin.
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- Proteins, 1994, v. 18, n. 2, p. 148, doi. 10.1002/prot.340180207
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- Article
A Connected-cluster of hydration around myoglobin: Correlation between molecular dynamics simulations and experiment.
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- Proteins, 1994, v. 18, n. 2, p. 133, doi. 10.1002/prot.340180206
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- Article
Bullied no more: when and how DNA shoves proteins around.
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- Quarterly Reviews of Biophysics, 2012, v. 45, n. 3, p. 257, doi. 10.1017/S0033583512000054
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- Article
Effects of dimerization of Serratia marcescens endonuclease on water dynamics.
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- Biopolymers, 2007, v. 85, n. 3, p. 241, doi. 10.1002/bip.20641
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- Article
Orientation of DNA on a surface from simulation.
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- Biopolymers, 2004, v. 73, n. 5, p. 570, doi. 10.1002/bip.20004
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Theoretical aspects of genomic variation screening using DNA microarrays.
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- Biopolymers, 2004, v. 73, n. 5, p. 614, doi. 10.1002/bip.20008
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- Article
Surface electrostatic effects in oligonucleotide microarrays: Control and optimization of binding thermodynamics.
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- Biopolymers, 2003, v. 68, n. 2, p. 265, doi. 10.1002/bip.10271
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- Article
Simulation of the bis-(penicillamine) enkephalin in ammonium chloride solution: A comparison with sodium chloride.
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- Biopolymers, 2003, v. 68, n. 2, p. 192, doi. 10.1002/bip.10292
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- Article
Structural basis for the activity of pp60<sup> c-src</sup> protein tyrosine kinase inhibitors.
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- Biopolymers, 2001, v. 59, n. 3, p. 167, doi. 10.1002/1097-0282(200109)59:3<167::AID-BIP1016>3.0.CO;2-L
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- Article
Simulations of the bis-penicillamine enkephalin in sodium chloride solution: A parameter study.
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- Biopolymers, 2001, v. 60, n. 2, p. 134, doi. 10.1002/1097-0282(2001)60:2<134::AID-BIP1009>3.0.CO;2-M
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- Article
Structure and dynamics of α-MSH using DRISM integral equation theory and stochastic dynamics.
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- Biopolymers, 1999, v. 50, n. 3, p. 255, doi. 10.1002/(SICI)1097-0282(199909)50:3<255::AID-BIP3>3.0.CO;2-V
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- Article
Hydration effects on the electrostatic potential around tuftsin.
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- Biopolymers, 1999, v. 50, n. 2, p. 133, doi. 10.1002/(SICI)1097-0282(199908)50:2<133::AID-BIP2>3.0.CO;2-C
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- Article
A molecular simulation picture of DNA hydration around A- and B-DNA.
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- Biopolymers, 1998, v. 48, n. 4, p. 199, doi. 10.1002/(SICI)1097-0282(1998)48:4<199::AID-BIP2>3.0.CO;2-5
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- Article
How independent are the appearances of n-mers in different genomes?
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- Bioinformatics, 2004, v. 20, n. 15, p. 2421, doi. 10.1093/bioinformatics/bth266
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- Article
A method for modeling icosahedral virions: Rotational symmetry boundary conditions.
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- Journal of Computational Chemistry, 1991, v. 12, n. 5, p. 627, doi. 10.1002/jcc.540120513
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- Article
Backbone additivity in the transfer model of protein solvation.
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- Protein Science: A Publication of the Protein Society, 2010, v. 19, n. 5, p. 1011, doi. 10.1002/pro.378
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- Article
An analysis of the molecular origin of osmolyte-dependent protein stability.
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- Protein Science: A Publication of the Protein Society, 2007, v. 16, n. 4, p. 733, doi. 10.1110/ps.062671607
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- Article
Fine-tuning function: Correlation of hinge domain interactions with functional distinctions between LacI and PurR.
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- Protein Science: A Publication of the Protein Society, 2002, v. 11, n. 4, p. 778, doi. 10.1110/ps.4050102
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- Article
Glutamate dehydrogenase: Structure of a hyperinsulinism mutant, corrections to the atomic model, and insights into a regulatory site.
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- Proteins, 2019, v. 87, n. 1, p. 41, doi. 10.1002/prot.25620
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- Article
Price of disorder in the lac repressor hinge helix.
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- Biopolymers, 2019, v. 110, n. 1, p. 1, doi. 10.1002/bip.23239
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- Article
Domain organization of membrane-bound factor VIII.
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- Biopolymers, 2013, v. 99, n. 7, p. 448, doi. 10.1002/bip.22199
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- Article
Phage-like packing structures with mean field sequence dependence.
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- Journal of Computational Chemistry, 2017, v. 38, n. 15, p. 1191, doi. 10.1002/jcc.24727
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- Article
Force field-dependent solution properties of glycine oligomers.
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- Journal of Computational Chemistry, 2015, v. 36, n. 17, p. 1275, doi. 10.1002/jcc.23934
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- Article
Electrostatic solvation free energy of amino acid side chain analogs: Implications for the validity of electrostatic linear response in water.
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- Journal of Computational Chemistry, 2011, v. 32, n. 5, p. 878, doi. 10.1002/jcc.21668
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- Article
Allosteric discrimination at the NADH/ADP regulatory site of glutamate dehydrogenase.
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- Protein Science: A Publication of the Protein Society, 2019, v. 28, n. 12, p. 2080, doi. 10.1002/pro.3748
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- Article
Protein collapse driven against solvation free energy without H-bonds.
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- Protein Science: A Publication of the Protein Society, 2016, v. 25, n. 1, p. 103, doi. 10.1002/pro.2749
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- Article