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Identifying potential survival strategies of HIV-1through virus-host protein interaction networks.
Published in:
BMC Systems Biology, 2010, v. 4, p. 96, doi. 10.1186/1752-0509-4-96
By:
- van Dijk, David;
- Ertaylan, Gokhan;
- Boucher, Charles A. B.;
- Sloot, Peter M. A.
Publication type:
Article
Anatomical Diversity of the Adult Corticospinal Tract Revealed by Single-Cell Transcriptional Profiling.
Published in:
Journal of Neuroscience, 2023, v. 43, n. 47, p. 7929, doi. 10.1523/JNEUROSCI.0811-22.2023
By:
- Golan, Noa;
- Ehrlich, Daniel;
- Bonanno, James;
- O’Brien, Rory F.;
- Murillo, Matias;
- Kauer, Sierra D.;
- Ravindra, Neal;
- Van Dijk, David;
- Cafferty, William B.
Publication type:
Article
Management of Severe Pancreatic Fistula After Pancreatoduodenectomy.
Published in:
2017
By:
- Smits, F. Jasmijn;
- van Santvoort, Hjalmar C.;
- Besselink, Marc G.;
- Batenburg, Marilot C. T.;
- Slooff, Robbert A. E.;
- Boerma, Djamila;
- Busch, Olivier R.;
- Coene, Peter P. L. O.;
- van Dam, Ronald M.;
- van Dijk, David P. J.;
- van Eijck, Casper H. J.;
- Festen, Sebastiaan;
- van der Harst, Erwin;
- de Hingh, Ignace H. J. T.;
- de Jong, Koert P.;
- Tol, Johanna A. M. G.;
- Borel Rinkes, Inne H. M.;
- Molenaar, I. Quintus;
- Dutch Pancreatic Cancer Group
Publication type:
journal article
A machine learning method for the identification and characterization of novel COVID-19 drug targets.
Published in:
Scientific Reports, 2023, v. 13, n. 1, p. 1, doi. 10.1038/s41598-023-34287-5
By:
- Schultz, Bruce;
- DeLong, Lauren Nicole;
- Masny, Aliaksandr;
- Lentzen, Manuel;
- Raschka, Tamara;
- van Dijk, David;
- Zaliani, Andrea;
- COPERIMOplus;
- Hansen, Anne Funck;
- Sabine;
- Rüping, Kugler Stefan;
- Burmeister, Jan;
- Kohlhammer, Jörn;
- Sarau, George;
- Christiansen, Silke;
- Kannt, Aimo;
- Foldenauer, Ann Christina;
- Claussen, Carsten;
- Resch, Eduard;
- Frank, Kevin
Publication type:
Article
Identifying radiomics signatures in body composition imaging for the prediction of outcome following pancreatic cancer resection.
Published in:
Frontiers in Oncology, 2023, p. 1, doi. 10.3389/fonc.2023.1062937
By:
- van der Kroft, Gregory;
- Wee, Leonard;
- Rensen, Sander S.;
- Brecheisen, Ralph;
- van Dijk, David P. J.;
- Eickhoff, Roman;
- Roeth, Anjali A.;
- Ulmer, Florian T.;
- Dekker, Andre;
- Neumann, Ulf P.;
- Olde Damink, Steven W. M.
Publication type:
Article
Quantifying the effect of experimental perturbations at single-cell resolution.
Published in:
Nature Biotechnology, 2021, v. 39, n. 5, p. 619, doi. 10.1038/s41587-020-00803-5
By:
- Burkhardt, Daniel B.;
- Stanley III, Jay S.;
- Tong, Alexander;
- Perdigoto, Ana Luisa;
- Gigante, Scott A.;
- Herold, Kevan C.;
- Wolf, Guy;
- Giraldez, Antonio J.;
- van Dijk, David;
- Krishnaswamy, Smita
Publication type:
Article
Author Correction: Visualizing structure and transitions in high-dimensional biological data.
Published in:
2020
By:
- Moon, Kevin R.;
- van Dijk, David;
- Wang, Zheng;
- Gigante, Scott;
- Burkhardt, Daniel B.;
- Chen, William S.;
- Yim, Kristina;
- van den Elzen, Antonia;
- Hirn, Matthew J.;
- Coifman, Ronald R.;
- Ivanova, Natalia B.;
- Wolf, Guy;
- Krishnaswamy, Smita
Publication type:
Correction Notice
Visualizing structure and transitions in high-dimensional biological data.
Published in:
Nature Biotechnology, 2019, v. 37, n. 12, p. 1482, doi. 10.1038/s41587-019-0336-3
By:
- Moon, Kevin R.;
- van Dijk, David;
- Wang, Zheng;
- Gigante, Scott;
- Burkhardt, Daniel B.;
- Chen, William S.;
- Yim, Kristina;
- Elzen, Antonia van den;
- Hirn, Matthew J.;
- Coifman, Ronald R.;
- Ivanova, Natalia B.;
- Wolf, Guy;
- Krishnaswamy, Smita
Publication type:
Article
Inference of Surface Membrane Factors of HIV-1 Infection through Functional Interaction Networks.
Published in:
PLoS ONE, 2010, v. 5, n. 10, p. 1, doi. 10.1371/journal.pone.0013139
By:
- Jaeger, Samira;
- Ertaylan, Gokhan;
- van Dijk, David;
- Leser, Ulf;
- Sloot, Peter
Publication type:
Article
A phenomapping-derived tool to personalize the selection of anatomical vs. functional testing in evaluating chest pain (ASSIST).
Published in:
European Heart Journal, 2021, v. 42, n. 26, p. 2536, doi. 10.1093/eurheartj/ehab223
By:
- Oikonomou, Evangelos K;
- Dijk, David Van;
- Parise, Helen;
- Suchard, Marc A;
- Lemos, James de;
- Antoniades, Charalambos;
- Velazquez, Eric J;
- Miller, Edward J;
- Khera, Rohan
Publication type:
Article
Renin-angiotensin system blockade prevents the increase in plasma transforming growth factor β1, and reduces proteinuria and kidney hypertrophy in the streptozotocin-diabetic rat.
Published in:
Journal of the Renin-Angiotensin-Aldosterone System, 2004, v. 5, n. 3, p. 146, doi. 10.3317/jraas.2004.032
By:
- Erman, Arie;
- Veksler, Semyon;
- Gafter, Uzi;
- Boner, Geoffrey;
- Wittenberg, Clara;
- van Dijk, David Jonathan
Publication type:
Article
Increased serum angiotensin-converting enzyme activity and plasma angiotensin II levels during pregnancy and postpartum in the diabetic rat.
Published in:
Journal of the Renin-Angiotensin-Aldosterone System, 2001, v. 2, n. 3, p. 193, doi. 10.3317/jraas.2001.027
By:
- van Dijk, David Jonathan;
- Boner, Geoffrey;
- Giler, Shaul;
- Erman, Arie
Publication type:
Article
Should the use of short acting angiotensin-converting enzyme inhibitors be abandoned?
Published in:
Journal of the Renin-Angiotensin-Aldosterone System, 2000, v. 1, n. 4, p. 365, doi. 10.3317/jraas.2000.068
By:
- Erman, Arie;
- Boner, Geoffrey;
- van Dijk, David J
Publication type:
Article
The association between preoperative body composition and aerobic fitness in patients scheduled for colorectal surgery.
Published in:
Colorectal Disease, 2022, v. 24, n. 1, p. 93, doi. 10.1111/codi.15941
By:
- Berkel, Annefleur E. M.;
- Wijk, Laura van;
- van Dijk, David P. J.;
- Prins, Sanne N.;
- der Palen, Job van;
- van Meeteren, Nico L. U.;
- Olde Damink, Steven W. M.;
- Klaase, Joost M.;
- Bongers, Bart C.
Publication type:
Article
Single cell immune profiling of dengue virus patients reveals intact immune responses to Zika virus with enrichment of innate immune signatures.
Published in:
PLoS Neglected Tropical Diseases, 2020, v. 14, n. 3, p. 1, doi. 10.1371/journal.pntd.0008112
By:
- Zhao, Yujiao;
- Amodio, Matthew;
- Vander Wyk, Brent;
- Gerritsen, Bram;
- Kumar, Mahesh M.;
- van Dijk, David;
- Moon, Kevin;
- Wang, Xiaomei;
- Malawista, Anna;
- Richards, Monique M.;
- Cahill, Megan E.;
- Desai, Anita;
- Sivadasan, Jayasree;
- Venkataswamy, Manjunatha M.;
- Ravi, Vasanthapuram;
- Fikrig, Erol;
- Kumar, Priti;
- Kleinstein, Steven H.;
- Krishnaswamy, Smita;
- Montgomery, Ruth R.
Publication type:
Article
Transcriptomic and clonal characterization of T cells in the human central nervous system.
Published in:
Science Immunology, 2020, v. 5, n. 51, p. 1, doi. 10.1126/sciimmunol.abb8786
By:
- Pappalardo, Jenna L.;
- Zhang, Le;
- Pecsok, Maggie K.;
- Perlman, Kelly;
- Zografou, Chrysoula;
- Raddassi, Khadir;
- Abulaban, Ahmad;
- Krishnaswamy, Smita;
- Antel, Jack;
- van Dijk, David;
- Hafler, David A.
Publication type:
Article
Slow-growing cells within isogenic populations have increased RNA polymerase error rates and DNA damage.
Published in:
Nature Communications, 2015, v. 6, n. 8, p. 7972, doi. 10.1038/ncomms8972
By:
- van Dijk, David;
- Dhar, Riddhiman;
- Missarova, Alsu M.;
- Espinar, Lorena;
- Blevins, William R.;
- Lehner, Ben;
- Carey, Lucas B.
Publication type:
Article
scNAT: a deep learning method for integrating paired single-cell RNA and T cell receptor sequencing profiles.
Published in:
Genome Biology, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s13059-023-03129-y
By:
- Zhu, Biqing;
- Wang, Yuge;
- Ku, Li-Ting;
- van Dijk, David;
- Zhang, Le;
- Hafler, David A.;
- Zhao, Hongyu
Publication type:
Article
Promoter Sequence Determines the Relationship between Expression Level and Noise.
Published in:
PLoS Biology, 2013, v. 11, n. 4, p. 1, doi. 10.1371/journal.pbio.1001528
By:
- Carey, Lucas B.;
- van Dijk, David;
- SlooT, Peter M. A.;
- Kaandorp, Jaap A.;
- Segal, Eran
Publication type:
Article
ERAS: Improving outcome in the cachectic HPB patient.
Published in:
Journal of Surgical Oncology, 2017, v. 116, n. 5, p. 617, doi. 10.1002/jso.24767
By:
- van Dijk, David P.J.;
- van Woerden, Victor;
- Cakir, Hamit;
- den Dulk, Marcel;
- Olde Damink, Steven W.M.;
- Dejong, Cornelis H.C.
Publication type:
Article
The effect of cause, timing, kidney function recovery, and recurrent events on the prognosis of acute kidney injury in kidney transplant recipients.
Published in:
Clinical Transplantation, 2018, v. 32, n. 10, p. N.PAG, doi. 10.1111/ctr.13398
By:
- van Dijk, Tuvya Y.;
- Shlomai, Amir;
- Chagnac, Avry;
- van Dijk, David J.;
- Rozen‐Zvi, Benaya;
- Rahamimov, Ruth;
- Mor, Eytan
Publication type:
Article
Inflammation‐associated intramyocellular lipid alterations in human pancreatic cancer cachexia.
Published in:
Journal of Cachexia, Sarcopenia & Muscle, 2024, v. 15, n. 4, p. 1283, doi. 10.1002/jcsm.13474
By:
- Deng, Min;
- Cao, Jianhua;
- van der Kroft, Gregory;
- van Dijk, David P.J.;
- Aberle, Merel R.;
- Grgic, Andrej;
- Neumann, Ulf P.;
- Wiltberger, Georg;
- Balluff, Benjamin;
- Schaap, Frank G.;
- Heeren, Ron M.A.;
- Olde Damink, Steven W.M.;
- Rensen, Sander S.
Publication type:
Article
Human pancreatic tumour organoid‐derived factors enhance myogenic differentiation.
Published in:
Journal of Cachexia, Sarcopenia & Muscle, 2022, v. 13, n. 2, p. 1302, doi. 10.1002/jcsm.12917
By:
- Vaes, Rianne D.W.;
- van Dijk, David P.J.;
- Farshadi, Elham Aïda;
- Olde Damink, Steven W.M.;
- Rensen, Sander S.;
- Langen, Ramon C.
Publication type:
Article
Gut microbiota and short‐chain fatty acid alterations in cachectic cancer patients.
Published in:
Journal of Cachexia, Sarcopenia & Muscle, 2021, v. 12, n. 6, p. 2007, doi. 10.1002/jcsm.12804
By:
- Ubachs, Jorne;
- Ziemons, Janine;
- Soons, Zita;
- Aarnoutse, Romy;
- van Dijk, David P.J.;
- Penders, John;
- van Helvoort, Ardy;
- Smidt, Marjolein L.;
- Kruitwagen, Roy F.P.M.;
- Baade‐Corpelijn, Lieke;
- Olde Damink, Steven W.M.;
- Rensen, Sander S.
Publication type:
Article
Ectopic fat in liver and skeletal muscle is associated with shorter overall survival in patients with colorectal liver metastases.
Published in:
Journal of Cachexia, Sarcopenia & Muscle, 2021, v. 12, n. 4, p. 983, doi. 10.1002/jcsm.12723
By:
- van Dijk, David P.J.;
- Zhao, Junfang;
- Kemter, Katrin;
- Baracos, Vickie E.;
- Dejong, Cornelis H.C.;
- Rensen, Sander S.;
- Olde Damink, Steven W.M.
Publication type:
Article
The Effect of 6 and 12 months Duodenal-Jejunal Bypass Liner Treatment on Obesity and Type 2 Diabetes: a Crossover Cohort Study.
Published in:
Obesity Surgery, 2018, v. 28, n. 5, p. 1255, doi. 10.1007/s11695-017-2997-7
By:
- van Rijn, Selwyn;
- van Dijk, David P. J.;
- Bouvy, Nicole D.;
- Betzel, Bark;
- Janssen, Ignace M.;
- Berends, Frits J.;
- de Jonge, Charlotte;
- Greve, Jan Willem M.
Publication type:
Article
A New Cutoff for Abnormal Proteinuria in Diabetes Mellitus Patients: Relationship to Albuminuria.
Published in:
Israel Medical Association Journal, 2016, v. 18, n. 7, p. 418
By:
- Erman, Orit;
- Erman, Arie;
- Vodonos, Alina;
- Gafter, Uzi;
- van Dijk, David J.
Publication type:
Article
Circulating markers of angiogenesis and endotheliopathy in COVID-19.
Published in:
Pulmonary Circulation, 2020, v. 10, n. 4, p. 1, doi. 10.1177/2045894020966547
By:
- Pine, Alexander B.;
- Meizlish, Matthew L.;
- Goshua, George;
- Chang, C-Hong;
- Zhang, Hanming;
- Bishai, Jason;
- Bahel, Parveen;
- Patel, Amisha;
- Gbyli, Rana;
- Kwan, Jennifer M.;
- Won, Christine H.;
- Price, Christina;
- Dela Cruz, Charles S.;
- Halene, Stephanie;
- van Dijk, David;
- Hwa, John;
- Lee, Alfred I.;
- Chun, Hyung J.
Publication type:
Article

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