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A novel framework for inferring parameters of transmission from viral sequence data.
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- PLoS Genetics, 2018, v. 14, n. 10, p. 1, doi. 10.1371/journal.pgen.1007718
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- Article
Mutational load causes stochastic evolutionary outcomes in acute RNA viral infection.
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- Virus Evolution, 2019, v. 5, n. 1, p. N.PAG, doi. 10.1093/ve/vez008
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- Article
Measurements of intrahost viral diversity require an unbiased diversity metric.
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- Virus Evolution, 2019, v. 5, n. 1, p. N.PAG, doi. 10.1093/ve/vey041
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- Article
High-Resolution Mapping of Complex Traits with a Four-Parent Advanced Intercross Yeast Population.
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- Genetics, 2013, v. 195, n. 3, p. 1141, doi. 10.1534/genetics.113.155515
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- Article
Distinguishing Driver and Passenger Mutations in an Evolutionary History Categorized by Interference.
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- Genetics, 2011, v. 189, n. 3, p. 989, doi. 10.1534/genetics.111.133975
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- Article
Inferring Genome-Wide Recombination Landscapes from Advanced Intercross Lines: Application to Yeast Crosses
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- PLoS ONE, 2013, v. 8, n. 5, p. 1, doi. 10.1371/journal.pone.0062266
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- Article
Effects of point mutations in pVHL on the binding of HIF-1α.
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- Proteins, 2012, v. 80, n. 3, p. 733, doi. 10.1002/prot.23230
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- Article
Efficacy of FFP3 respirators for prevention of SARS-CoV-2 infection in healthcare workers.
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- eLife, 2021, p. 1, doi. 10.7554/eLife.71131
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- Article
Superspreaders drive the largest outbreaks of hospital onset COVID-19 infections.
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- eLife, 2021, p. 1, doi. 10.7554/eLife.67308
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- Article
A2B-COVID: A Tool for Rapidly Evaluating Potential SARS-CoV-2 Transmission Events.
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- Molecular Biology & Evolution, 2022, v. 39, n. 3, p. 1, doi. 10.1093/molbev/msac025
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- Article
Fitness Landscape of the Fission Yeast Genome.
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- Molecular Biology & Evolution, 2019, v. 36, n. 8, p. 1612, doi. 10.1093/molbev/msz113
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- Article
Fitness Inference from Short-Read Data: Within-Host Evolution of a Reassortant H5N1 Influenza Virus.
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- Molecular Biology & Evolution, 2015, v. 32, n. 11, p. 3012, doi. 10.1093/molbev/msv171
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- Article
Identifying Selection in the Within-Host Evolution of Influenza Using Viral Sequence Data.
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- PLoS Computational Biology, 2014, v. 10, n. 7, p. 1, doi. 10.1371/journal.pcbi.1003755
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- Article
EMu: probabilistic inference of mutational processes and their localization in the cancer genome.
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- Genome Biology, 2013, v. 14, n. 4, p. 1, doi. 10.1186/gb-2013-14-4-r39
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- Article
A qualitative process evaluation using the behaviour change wheel approach: Did a whole genome sequence report form (SRF) used to reduce nosocomial SARS‐CoV‐2 within UK hospitals operate as anticipated?
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- British Journal of Health Psychology, 2023, v. 28, n. 4, p. 1011, doi. 10.1111/bjhp.12666
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- Article
Favipiravir and Zanamivir Cleared Infection with Influenza B in a Severely Immunocompromised Child.
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- Clinical Infectious Diseases, 2020, v. 71, n. 7, p. e191, doi. 10.1093/cid/ciaa023
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- Article
Components of Selection in the Evolution of the Influenza Virus: Linkage Effects Beat Inherent Selection.
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- PLoS Pathogens, 2012, v. 8, n. 12, p. 1, doi. 10.1371/journal.ppat.1003091
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- Article
Quantitative measurement of protease ligand conformation.
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- Journal of Computer-Aided Molecular Design, 2008, v. 22, n. 2, p. 105, doi. 10.1007/s10822-008-9173-z
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- Article
Rapid identification of genes controlling virulence and immunity in malaria parasites.
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- PLoS Pathogens, 2017, v. 13, n. 7, p. 1, doi. 10.1371/journal.ppat.1006447
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- Article
The effective rate of influenza reassortment is limited during human infection.
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- PLoS Pathogens, 2017, v. 13, n. 2, p. 1, doi. 10.1371/journal.ppat.1006203
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- Article
Inferring Fitness Effects from Time-Resolved Sequence Data with a Delay-Deterministic Model.
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- Genetics, 2018, v. 209, n. 1, p. 255, doi. 10.1534/genetics.118.300790
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Population genomic and evolutionary modelling analyses reveal a single major QTL for ivermectin drug resistance in the pathogenic nematode, Haemonchus contortus.
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- BMC Genomics, 2019, v. 20, n. 1, p. N.PAG, doi. 10.1186/s12864-019-5592-6
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- Article
The airborne transmission of viruses causes tight transmission bottlenecks.
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- Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-47923-z
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A de novo approach to inferring within-host fitness effects during untreated HIV-1 infection.
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- PLoS Pathogens, 2020, v. 16, n. 6, p. 1, doi. 10.1371/journal.ppat.1008171
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Building a mechanistic mathematical model of hepatitis C virus entry.
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- PLoS Computational Biology, 2019, v. 15, n. 3, p. 1, doi. 10.1371/journal.pcbi.1006905
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- Article
A method to infer positive selection from marker dynamics in an asexual population.
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- Bioinformatics, 2012, v. 28, n. 6, p. 831, doi. 10.1093/bioinformatics/btr722
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- Article
The statistical significance of selected sense-antisense peptide interactions [J. Comp. Chem. 33, 1440-1447].
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- Journal of Computational Chemistry, 2013, v. 34, n. 3, p. 256, doi. 10.1002/jcc.23116
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- Article
The Statistical Significance of Selected Sense-Antisense Peptide Interactions.
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- Journal of Computational Chemistry, 2012, v. 33, n. 16, p. 1440, doi. 10.1002/jcc.22977
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- Article
Connectivity and binding-site recognition: Applications relevant to drug design.
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- Journal of Computational Chemistry, 2010, v. 31, n. 15, p. 2677, doi. 10.1002/jcc.21561
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Closed loop folding units from structural alignments: Experimental foldons revisited.
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- Journal of Computational Chemistry, 2010, v. 31, n. 15, p. 2689, doi. 10.1002/jcc.21562
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- Article