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Simultaneous regression and classification for drug sensitivity prediction using an advanced random forest method.
- Published in:
- Scientific Reports, 2022, v. 12, n. 1, p. 1, doi. 10.1038/s41598-022-17609-x
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- Article
Abstract analysis of pathways using the BN++ software framework.
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- 2007
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- Publication type:
- Abstract
Combining miRNA and mRNA Expression Profiles in Wilms Tumor Subtypes.
- Published in:
- International Journal of Molecular Sciences, 2016, v. 17, n. 4, p. 475, doi. 10.3390/ijms17040475
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- Article
Langevin dynamics simulations of macromolecules on parallel computers.
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- Macromolecular Theory & Simulations, 1997, v. 6, n. 2, p. 507, doi. 10.1002/mats.1997.040060213
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- Article
Glycosylation patterns of human chorionic gonadotropin revealed by liquid chromatography-mass spectrometry and bioinformatics.
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- Electrophoresis, 2006, v. 27, n. 13, p. 2734, doi. 10.1002/elps.200600022
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- Publication type:
- Article
Time-resolved RNA signatures of CD4+ T cells in Parkinson's disease.
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- Cell Death Discovery, 2023, v. 9, n. 1, p. 1, doi. 10.1038/s41420-023-01333-0
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- Publication type:
- Article
miRCarta: a central repository for collecting miRNA candidates.
- Published in:
- Nucleic Acids Research, 2018, v. 46, n. D1, p. D160, doi. 10.1093/nar/gkx851
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- Publication type:
- Article
RegulatorTrail: a web service for the identification of key transcriptional regulators.
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- Nucleic Acids Research, 2017, v. 45, n. W1, p. W146, doi. 10.1093/nar/gkx350
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- Article
miRPathDB: a new dictionary on microRNAs and target pathways.
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- Nucleic Acids Research, 2017, v. 45, n. D1, p. D90, doi. 10.1093/nar/gkw926
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- Publication type:
- Article
An integer linear programming approach for finding deregulated subgraphs in regulatory networks.
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- Nucleic Acids Research, 2012, v. 40, n. 6, p. e43, doi. 10.1093/nar/gkr1227
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- Article
A dictionary on microRNAs and their putative target pathways.
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- Nucleic Acids Research, 2010, v. 38, n. 13, p. 4476, doi. 10.1093/nar/gkq167
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- Publication type:
- Article
GeneTrail—advanced gene set enrichment analysis.
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- Nucleic Acids Research, 2007, v. 35, n. suppl_2, p. W186, doi. 10.1093/nar/gkm323
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- Publication type:
- Article
SePaCS—a web-based application for classification of seroreactivity profiles.
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- Nucleic Acids Research, 2007, v. 35, n. suppl_2, p. W683, doi. 10.1093/nar/gkm262
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- Publication type:
- Article
MERIDA: a novel Boolean logic-based integer linear program for personalized cancer therapy.
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- Bioinformatics, 2021, v. 37, n. 21, p. 3881, doi. 10.1093/bioinformatics/btab546
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- Publication type:
- Article
Cas9-mediated knockout of Ndrg2 enhances the regenerative potential of dendritic cells for wound healing.
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- Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-40519-z
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- Publication type:
- Article
Combination of Autoantibody Signature with PSA Level Enables a Highly Accurate Blood-Based Differentiation of Prostate Cancer Patients from Patients with Benign Prostatic Hyperplasia.
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- PLoS ONE, 2015, v. 10, n. 6, p. 1, doi. 10.1371/journal.pone.0128235
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- Publication type:
- Article
BiNA: A Visual Analytics Tool for Biological Network Data.
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- PLoS ONE, 2014, v. 9, n. 2, p. 1, doi. 10.1371/journal.pone.0087397
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- Publication type:
- Article
Autoantibody Signature Differentiates Wilms Tumor Patients from Neuroblastoma Patients.
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- PLoS ONE, 2011, v. 6, n. 12, p. 1, doi. 10.1371/journal.pone.0028951
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- Article
Multiple Sclerosis: MicroRNA Expression Profiles Accurately Differentiate Patients with Relapsing- Remitting Disease from Healthy Controls.
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- PLoS ONE, 2009, v. 4, n. 10, p. 1, doi. 10.1371/journal.pone.0007440
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- Publication type:
- Article
Increased Seroreactivity to Glioma-Expressed Antigen 2 in Brain Tumor Patients under Radiation.
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- PLoS ONE, 2008, v. 3, n. 5, p. 1, doi. 10.1371/journal.pone.0002164
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- Article
Identification of lung cancer with high sensitivity and specificity by blood testing.
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- Respiratory Research, 2010, v. 11, p. 18, doi. 10.1186/1465-9921-11-18
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- Publication type:
- Article
Novel autoantigens immunogenic in COPD patients.
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- Respiratory Research, 2009, v. 10, p. 1, doi. 10.1186/1465-9921-10-20
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- Publication type:
- Article
Transcriptome analysis by GeneTrail revealed regulation of functional categories in response to alterations of iron homeostasis in Arabidopsis thaliana.
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- BMC Plant Biology, 2011, v. 11, n. 1, p. 87, doi. 10.1186/1471-2229-11-87
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- Publication type:
- Article
Staphylococcus aureus ClpC ATPase is a late growth phase effector of metabolism and persistence.
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- Proteomics, 2009, v. 9, n. 5, p. 1152, doi. 10.1002/pmic.200800586
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- Publication type:
- Article
Changes of Protein Expression after CRISPR/Cas9 Knockout of miRNA-142 in Cell Lines Derived from Diffuse Large B-Cell Lymphoma.
- Published in:
- Cancers, 2022, v. 14, n. 20, p. 5031, doi. 10.3390/cancers14205031
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- Article
NightShift: NMR shift inference by general hybrid model training - a framework for NMR chemical shift prediction.
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- BMC Bioinformatics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2105-14-98
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- Article
BALL - biochemical algorithms library 1.3.
- Published in:
- BMC Bioinformatics, 2010, v. 11, p. 531, doi. 10.1186/1471-2105-11-531
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- Article
BNDB -- The Biochemical Network Database.
- Published in:
- BMC Bioinformatics, 2007, v. 8, p. 367, doi. 10.1186/1471-2105-8-367
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- Publication type:
- Article
GraBCas: a bioinformatics tool for score-based prediction of Caspase- and Granzyme B-cleavage sites in protein sequences.
- Published in:
- Nucleic Acids Research, 2005, v. 33, n. suppl 2, p. w208, doi. 10.1093/nar/gki433
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- Publication type:
- Article
SEQUENTIAL AND PARALLEL ALGORITHMS FOR THE k CLOSEST PAIRS PROBLEM.
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- International Journal of Computational Geometry & Applications, 1995, v. 5, n. 3, p. 273, doi. 10.1142/S0218195995000167
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- Publication type:
- Article
AN OPTIMAL CONSTRUCTION METHOD FOR GENERALIZED CONVEX LAYERS.
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- International Journal of Computational Geometry & Applications, 1993, v. 3, n. 3, p. 245, doi. 10.1142/S0218195993000166
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- Article
The Roche Cancer Genome Database 2.0.
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- BMC Medical Genomics, 2011, v. 4, n. 1, p. 43, doi. 10.1186/1755-8794-4-43
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- Article
A branch-and-cut algorithm for multiple sequence alignment.
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- Mathematical Programming, 2006, v. 105, n. 2/3, p. 387, doi. 10.1007/s10107-005-0659-3
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- Publication type:
- Article
Trust me if you can: a survey on reliability and interpretability of machine learning approaches for drug sensitivity prediction in cancer.
- Published in:
- Briefings in Bioinformatics, 2024, v. 25, n. 5, p. 1, doi. 10.1093/bib/bbae379
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- Article
A comprehensive benchmarking of machine learning algorithms and dimensionality reduction methods for drug sensitivity prediction.
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- Briefings in Bioinformatics, 2024, v. 25, n. 4, p. 1, doi. 10.1093/bib/bbae242
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- Publication type:
- Article
DGCR8 E518K mutation found in Wilms tumors leads to a partial miRNA processing defect that alters gene expression patterns and biological processes.
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- Carcinogenesis, 2022, v. 43, n. 2, p. 82, doi. 10.1093/carcin/bgab110
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- Article
Genome wide expression profiling identifies specific deregulated pathways in meningioma.
- Published in:
- International Journal of Cancer, 2009, v. 124, n. 2, p. 346, doi. 10.1002/ijc.23942
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- Publication type:
- Article
Toward an early diagnosis of lung cancer: An autoantibody signature for squamous cell lung carcinoma.
- Published in:
- International Journal of Cancer, 2008, v. 123, n. 7, p. 1631, doi. 10.1002/ijc.23680
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- Publication type:
- Article
Frequent overexpression of the genes FXR1, CLAPM1 and EIF4G located on amplicon 3q26-27 in squamous cell carcinoma of the lung.
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- International Journal of Cancer, 2007, v. 120, n. 12, p. 2538, doi. 10.1002/ijc.22585
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- Publication type:
- Article
Integrative analysis of cancer-related data using CAP.
- Published in:
- FASEB Journal, 2004, v. 18, n. 12, p. 1465, doi. 10.1096/fj.04-1797fje
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- Publication type:
- Article
BALLView: An object-oriented molecular visualization and modeling framework.
- Published in:
- Journal of Computer-Aided Molecular Design, 2005, v. 19, n. 11, p. 791, doi. 10.1007/s10822-005-9027-x
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- Publication type:
- Article
Network-based interactive navigation and analysis of large biological datasets.
- Published in:
- IT: Information Technology, 2015, v. 57, n. 1, p. 37, doi. 10.1515/itit-2014-1076
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- Publication type:
- Article
The role of TCF3 as potential master regulator in blastemal Wilms tumors.
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- International Journal of Cancer, 2019, v. 144, n. 6, p. 1432, doi. 10.1002/ijc.31834
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- Publication type:
- Article
Drug Target Inspector: An assistance tool for patient treatment stratification.
- Published in:
- International Journal of Cancer, 2016, v. 138, n. 7, p. 1765, doi. 10.1002/ijc.29897
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- Publication type:
- Article
Multicenter study identified molecular blood-born protein signatures for Wilms Tumor.
- Published in:
- International Journal of Cancer, 2012, v. 131, n. 3, p. 673, doi. 10.1002/ijc.26419
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- Publication type:
- Article
Novel immunogenic antigens increase classification accuracy in meningioma to 93.84%.
- Published in:
- International Journal of Cancer, 2011, v. 128, n. 6, p. 1493, doi. 10.1002/ijc.25467
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- Article
Amplicons on chromosome 12q13-21 in glioblastoma recurrences.
- Published in:
- International Journal of Cancer, 2010, v. 126, n. 11, p. 2594, doi. 10.1002/ijc.24971
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- Publication type:
- Article
miR-34a: a new player in the regulation of T cell function by modulation of NF-κB signaling.
- Published in:
- Cell Death & Disease, 2019, v. 10, n. 2, p. 1, doi. 10.1038/s41419-018-1295-1
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- Article
Modulation of intracellular calcium signaling by microRNA-34a-5p.
- Published in:
- Cell Death & Disease, 2018, v. 9, n. 10, p. 1, doi. 10.1038/s41419-018-1050-7
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- Publication type:
- Article
Circulating serum miRNAs as potential biomarkers for nephroblastoma.
- Published in:
- Pediatric Blood & Cancer, 2015, v. 62, n. 8, p. 1360, doi. 10.1002/pbc.25481
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- Publication type:
- Article