Found: 19

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  • CAGE: cap analysis of gene expression.

    Published in:
    Nature Methods, 2006, v. 3, n. 3, p. 211, doi. 10.1038/nmeth0306-211
    By:
    • Kodzius, Rimantas;
    • Kojima, Miki;
    • Nishiyori, Hiromi;
    • Nakamura, Mari;
    • Fukuda, Shiro;
    • Tagami, Michihira;
    • Sasaki, Daisuke;
    • Imamura, Kengo;
    • Kai, Chikatoshi;
    • Harbers, Matthias;
    • Hayashizaki, Yoshihide;
    • Carninci, Piero
    Publication type:
    Article

  • High Sensitivity TSS Prediction: Estimates of Locations Where TSS Cannot Occur.

    Published in:
    PLoS ONE, 2010, v. 5, n. 11, p. 1, doi. 10.1371/journal.pone.0013934
    By:
    • Schaefer, Ulf;
    • Kodzius, Rimantas;
    • Kai, Chikatoshi;
    • Kawai, Jun;
    • Carninci, Piero;
    • Hayashizaki, Yoshihide;
    • Bajic, Vladimir B.
    Publication type:
    Article

  • Assessment of adaptive evolution between wheat and rice asdeduced from full-length common wheat cDNA sequence data andexpression patterns.

    Published in:
    BMC Genomics, 2009, v. 10, p. 271, doi. 10.1186/1471-2164-10-271
    By:
    • Kawaura, Kanako;
    • Mochida, Keiichi;
    • Enju, Akiko;
    • Totoki, Yasushi;
    • Toyoda, Atsushi;
    • Sakaki, Yoshiyuki;
    • Kai, Chikatoshi;
    • Kawai, Jun;
    • Hayashizaki, Yoshihide;
    • Seki, Motoaki;
    • Shinozaki, Kazuo;
    • Ogihara, Yasunari
    Publication type:
    Article

  • Hidden layers of human small RNAs.

    Published in:
    BMC Genomics, 2008, v. 9, p. 1, doi. 10.1186/1471-2164-9-157
    By:
    • Kawaji, Hideya;
    • Nakamura, Mari;
    • Takahashi, Yukari;
    • Sandelin, Albin;
    • Katayama, Shintaro;
    • Fukuda, Shiro;
    • Daub, Carsten O.;
    • Kai, Chikatoshi;
    • Kawai, Jun;
    • Yasuda, Jun;
    • Carninci, Piero;
    • Hayashizaki, Yoshihide
    Publication type:
    Article

  • Computational promoter analysis of mouse, rat and human antimicrobial peptide-coding genes.

    Published in:
    BMC Bioinformatics, 2006, v. 7, p. S8, doi. 10.1186/1471-2105-7-S5-S8
    By:
    • Brahmachary, Manisha;
    • Schönbach, Christian;
    • Liang Yang;
    • Enli Huang;
    • Sin Lam Tan;
    • Chowdhary, Rajesh;
    • Krishnan, S. P. T.;
    • Chin-Yo Lin;
    • Hume, David A.;
    • Kai, Chikatoshi;
    • Kawai, Jun;
    • Carninci, Piero;
    • Hayashizaki, Yoshihide;
    • Bajic, Vladimir B.
    Publication type:
    Article

  • PhosphoregDB: The tissue and sub-cellular distribution of mammalian protein kinases and phosphatases.

    Published in:
    BMC Bioinformatics, 2006, v. 7, p. 82, doi. 10.1186/1471-2105-7-82
    By:
    • Forrest, Alistair RR;
    • Taylor, Darrin F;
    • Fink, J Lynn;
    • Gongora, M Milena;
    • Flegg, Cameron;
    • Teasdale, Rohan D;
    • Suzuki, Harukazu;
    • Kanamori, Mutsumi;
    • Kai, Chikatoshi;
    • Hayashizaki, Yoshihide;
    • Grimmond, Sean M
    Publication type:
    Article

  • CAGE Basic/Analysis Databases: the CAGE resource for comprehensive promoter analysis.

    Published in:
    Nucleic Acids Research, 2006, v. 34, n. suppl 1, p. d632, doi. 10.1093/nar/gkj034
    By:
    • Kawaji, Hideya;
    • Kasukawa, Takeya;
    • Fukuda, Shiro;
    • Katayama, Shintaro;
    • Kai, Chikatoshi;
    • Kawai, Jun;
    • Carninci, Piero;
    • Hayashizaki, Yoshihide
    Publication type:
    Article

  • LOCATE: a mouse protein subcellular localization database.

    Published in:
    Nucleic Acids Research, 2006, v. 34, n. suppl 1, p. d213, doi. 10.1093/nar/gkj069
    By:
    • Fink, J. Lynn;
    • Aturaliya, Rajith N.;
    • Davis, Melissa J.;
    • Zhang, Fasheng;
    • Hanson, Kelly;
    • Teasdale, Melvena S.;
    • Kai, Chikatoshi;
    • Kawai, Jun;
    • Carninci, Piero;
    • Hayashizaki, Yoshihide;
    • Teasdale, Rohan D.
    Publication type:
    Article

  • Subcellular Localization of Mammalian Type II Membrane Proteins.

    Published in:
    Traffic, 2006, v. 7, n. 5, p. 613, doi. 10.1111/j.1600-0854.2006.00407.x
    By:
    • Aturaliya, Rajith N.;
    • Fink, J. Lynn;
    • Davis, Melissa J.;
    • Teasdale, Melvena S.;
    • Hanson, Kelly A.;
    • Miranda, Kevin C.;
    • Forrest, Alistair R. R.;
    • Grimmond, Sean M.;
    • Suzuki, Harukazu;
    • Kanamori, Mutsumi;
    • Kai, Chikatoshi;
    • Kawai, Jun;
    • Carninci, Piero;
    • Hayashizaki, Yoshihide;
    • Teasdale, Rohan D.
    Publication type:
    Article

  • Heterotachy in Mammalian Promoter Evolution.

    Published in:
    PLoS Genetics, 2006, v. 2, n. 4, p. e30, doi. 10.1371/journal.pgen.0020030
    By:
    • Taylor, Martin S.;
    • Kai, Chikatoshi;
    • Carninci, Piero;
    • Hayashizaki, Yoshihide;
    • Semple, Colin A. M.;
    • Kawai, Jun
    Publication type:
    Article

  • Mice and Men: Their Promoter Properties.

    Published in:
    PLoS Genetics, 2006, v. 2, n. 4, p. e54, doi. 10.1371/journal.pgen.0020054
    By:
    • Bajic, Vladimir B.;
    • Sin Lam Tan;
    • Christoffels, Alan;
    • Schönbach, Christian;
    • Lipovich, Leonard;
    • Liang Yang;
    • Hofmann, Oliver;
    • Kruger, Adele;
    • Hide, Winston;
    • Kai, Chikatoshi;
    • Kawai, Jun;
    • Hume, David A.;
    • Carninci, Piero;
    • Hayashizaki, Yoshihide
    Publication type:
    Article

  • A Simple Physical Model Predicts Small<br /> Exon Length Variations.

    Published in:
    PLoS Genetics, 2006, v. 2, n. 4, p. e45, doi. 10.1371/journal.pgen.0020045
    By:
    • Tzu-Ming Chern;
    • Van Nimwegen, Erik;
    • Kai, Chikatoshi;
    • Kawai, Jun;
    • Carninci, Piero;
    • Hayashizaki, Yoshihide;
    • Zavolan, Mihaela
    Publication type:
    Article

  • A Method for Similarity Search of Genomic Positional Expression Using CAGE.

    Published in:
    PLoS Genetics, 2006, v. 2, n. 4, p. e44, doi. 10.1371/journal.pgen.0020044
    By:
    • Seno, Shigeto;
    • Takenaka, Yoichi;
    • Kai, Chikatoshi;
    • Kawai, Jun;
    • Carninci, Piero;
    • Hayashizaki, Yoshihide;
    • Matsuda, Hideo
    Publication type:
    Article

  • Complex Loci in Human and Mouse Genomes.

    Published in:
    PLoS Genetics, 2006, v. 2, n. 4, p. e47, doi. 10.1371/journal.pgen.0020047
    By:
    • Engström, Pär G.;
    • Suzuki, Harukazu;
    • Ninomiya, Noriko;
    • Akalin, Altuna;
    • Sessa, Luca;
    • Lavorgna, Giovanni;
    • Brozzi, Alessandro;
    • Luzi, Lucilla;
    • Sin Lam Tan;
    • Liang Yang;
    • Kunarso, Galih;
    • Lian-Chong Ng, Edwin;
    • Batalov, Serge;
    • Wahlestedt, Claes;
    • Kai, Chikatoshi;
    • Kawai, Jun;
    • Carninci, Piero;
    • Hayashizaki, Yoshihide;
    • Wells, Christine A.;
    • Bajic, Vladimir B.
    Publication type:
    Article

  • Differential Use of Signal Peptides and<br /> Membrane Domains Is a Common Occurrence in the Protein Output of Transcriptional Units.

    Published in:
    PLoS Genetics, 2006, v. 2, n. 4, p. e46, doi. 10.1371/journal.pgen.0020046
    By:
    • Davis, Melissa J.;
    • Hanson, Kelly A.;
    • Clark, Francis;
    • Fink, J. Lynn;
    • Fasheng Zhang;
    • Kasukawa, Takeya;
    • Kai, Chikatoshi;
    • Kawai, Jun;
    • Carninci, Piero;
    • Hayashizaki, Yoshihide;
    • Teasdale, Rohan D.
    Publication type:
    Article

  • Clusters of Internally Primed Transcripts Reveal Novel Long Noncoding RNAs.

    Published in:
    PLoS Genetics, 2006, v. 2, n. 4, p. e37, doi. 10.1371/journal.pgen.0020037
    By:
    • Furuno, Masaaki;
    • Pang, Ken C.;
    • Ninomiya, Noriko;
    • Fukuda, Shiro;
    • Frith, Martin C.;
    • Bult, Carol;
    • Kai, Chikatoshi;
    • Kawai, Jun;
    • Carninci, Piero;
    • Hayashizaki, Yoshihide;
    • Mattick, John S.;
    • Suzuki, Harukazu
    Publication type:
    Article

  • The Abundance of Short Proteins<br /> in the Mammalian Proteome.

    Published in:
    PLoS Genetics, 2006, v. 2, n. 4, p. e52, doi. 10.1371/journal.pgen.0020052
    By:
    • Frith, Martin C.;
    • Forrest, Alistair R.;
    • Nourbakhsh, Ehsan;
    • Pang, Ken C.;
    • Kai, Chikatoshi;
    • Kawai, Jun;
    • Carninci, Piero;
    • Hayashizaki, Yoshihide;
    • Bailey, Timothy L.;
    • Grimmond, Sean M.
    Publication type:
    Article

  • Pseudo-Messenger RNA: Phantoms<br /> of the Transcriptome.

    Published in:
    PLoS Genetics, 2006, v. 2, n. 4, p. e23, doi. 10.1371/journal.pgen.0020023
    By:
    • Frith, Martin C.;
    • Wilming, Laurens G.;
    • Forrest, Alistair;
    • Kawaji, Hideya;
    • Sin Lam Tan;
    • Wahlestedt, Claes;
    • Bajic, Vladimir B.;
    • Kai, Chikatoshi;
    • Kawai, Jun;
    • Carninci, Piero;
    • Hayashizaki, Yoshihide;
    • Bailey, Timothy L.;
    • Huminiecki, Lukasz
    Publication type:
    Article

  • NF-κB activator Act1 associates with IL-1/Toll pathway adaptor molecule TRAF6

    Published in:
    FEBS Letters, 2002, v. 532, n. 1/2, p. 241, doi. 10.1016/S0014-5793(02)03688-8
    By:
    • Kanamori, Mutsumi;
    • Kai, Chikatoshi;
    • Hayashizaki, Yoshihide;
    • Suzuki, Harukazu
    Publication type:
    Article