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CEP55 is a determinant of cell fate during perturbed mitosis in breast cancer.
Published in:
EMBO Molecular Medicine, 2018, v. 10, n. 9, p. 1, doi. 10.15252/emmm.201708566
By:
- Kalimutho, Murugan;
- Sinha, Debottam;
- Jeffery, Jessie;
- Nones, Katia;
- Srihari, Sriganesh;
- Fernando, Winnie C.;
- Duijf, Pascal H. G.;
- Vennin, Claire;
- Raninga, Prahlad;
- Nanayakkara, Devathri;
- Mittal, Deepak;
- Saunus, Jodi M.;
- Lakhani, Sunil R.;
- López, J. Alejandro;
- Spring, Kevin J.;
- Timpson, Paul;
- Gabrielli, Brian;
- Waddell, Nicola;
- Khanna, Kum Kum
Publication type:
Article
Phenotypic and molecular dissection of metaplastic breast cancer and the prognostic implications.
Published in:
Journal of Pathology, 2019, v. 247, n. 2, p. 214, doi. 10.1002/path.5184
By:
- McCart Reed, Amy Ellen;
- Kalaw, Emarene;
- Nones, Katia;
- Bettington, Mark;
- Lim, Malcolm;
- Bennett, James;
- Johnstone, Kate;
- Kutasovic, Jamie Rose;
- Saunus, Jodi Marie;
- Kazakoff, Stephen;
- Xu, Qinying;
- Wood, Scott;
- Holmes, Oliver;
- Leonard, Conrad;
- Reid, Lynne Estelle;
- Black, Debra;
- Niland, Colleen;
- Ferguson, Kaltin;
- Gresshoff, Irma;
- Raghavendra, Ashwini
Publication type:
Article
Mixed ductal‐lobular carcinomas: evidence for progression from ductal to lobular morphology.
Published in:
Journal of Pathology, 2018, v. 244, n. 4, p. 460, doi. 10.1002/path.5040
By:
- McCart Reed, Amy E.;
- Kutasovic, Jamie R.;
- Nones, Katia;
- Saunus, Jodi M.;
- Da Silva, Leonard;
- Newell, Felicity;
- Kazakoff, Stephen;
- Melville, Lewis;
- Jayanthan, Janani;
- Vargas, Ana Cristina;
- Reid, Lynne E.;
- Beesley, Jonathan;
- Chen, Xiao Qing;
- Patch, Anne-Marie;
- Clouston, David;
- Porter, Alan;
- Evans, Elizabeth;
- Pearson, John V.;
- Chenevix‐Trench, Georgia;
- Cummings, Margaret C.
Publication type:
Article
Integrated genomic and transcriptomic analysis of human brain metastases identifies alterations of potential clinical significance.
Published in:
Journal of Pathology, 2015, v. 237, n. 3, p. 363, doi. 10.1002/path.4583
By:
- Saunus, Jodi M;
- Quinn, Michael CJ;
- Patch, Ann‐Marie;
- Pearson, John V;
- Bailey, Peter J;
- Nones, Katia;
- McCart Reed, Amy E;
- Miller, David;
- Wilson, Peter J;
- Al‐Ejeh, Fares;
- Mariasegaram, Mythily;
- Lau, Queenie;
- Withers, Teresa;
- Jeffree, Rosalind L;
- Reid, Lynne E;
- Da Silva, Leonard;
- Matsika, Admire;
- Niland, Colleen M;
- Cummings, Margaret C;
- Bruxner, Timothy JC
Publication type:
Article
Characterization of a novel breast cancer cell line derived from a metastatic bone lesion of a breast cancer patient.
Published in:
Breast Cancer Research & Treatment, 2018, v. 170, n. 1, p. 179, doi. 10.1007/s10549-018-4719-9
By:
- Johnson, Julie;
- Bessette, Darrell C.;
- Saunus, Jodi M.;
- Smart, Chanel E.;
- Song, Sarah;
- Johnston, Rebecca L.;
- Cocciardi, Sibylle;
- Rozali, Esdy N.;
- Johnstone, Cameron N.;
- Vargas, Ana Christina;
- Kazakoff, Stephen H.;
- BioBank, Victorian Cancer;
- Khanna, Kum Kum;
- Lakhani, Sunil R.;
- Chenevix-Trench, Georgia;
- Simpson, Peter T.;
- Nones, Katia;
- Waddell, Nicola;
- Al-Ejeh, Fares
Publication type:
Article
Telomere sequence content can be used to determine ALT activity in tumours.
Published in:
Nucleic Acids Research, 2018, v. 46, n. 10, p. 4903, doi. 10.1093/nar/gky297
By:
- Lee, Michael;
- Teber, Erdahl T;
- Holmes, Oliver;
- Nones, Katia;
- Patch, Ann-Marie;
- Dagg, Rebecca A;
- Lau, Loretta M S;
- Lee, Joyce H;
- Napier, Christine E;
- Arthur, Jonathan W
Publication type:
Article
Comprehensive genomic and tumour immune profiling reveals potential therapeutic targets in malignant pleural mesothelioma.
Published in:
Genome Medicine, 2022, v. 14, n. 1, p. 1, doi. 10.1186/s13073-022-01060-8
By:
- Creaney, Jenette;
- Patch, Ann-Marie;
- Addala, Venkateswar;
- Sneddon, Sophie A.;
- Nones, Katia;
- Dick, Ian M.;
- Lee, Y. C. Gary;
- Newell, Felicity;
- Rouse, Ebony J.;
- Naeini, Marjan M.;
- Kondrashova, Olga;
- Lakis, Vanessa;
- Nakas, Apostolos;
- Waller, David;
- Sharkey, Annabel;
- Mukhopadhyay, Pamela;
- Kazakoff, Stephen H.;
- Koufariotis, Lambros T.;
- Davidson, Aimee L.;
- Ramarao-Milne, Priya
Publication type:
Article
Patient-derived xenograft models capture genomic heterogeneity in endometrial cancer.
Published in:
Genome Medicine, 2022, v. 14, n. 1, p. 1, doi. 10.1186/s13073-021-00990-z
By:
- Bonazzi, Vanessa F.;
- Kondrashova, Olga;
- Smith, Deborah;
- Nones, Katia;
- Sengal, Asmerom T.;
- Ju, Robert;
- Packer, Leisl M.;
- Koufariotis, Lambros T.;
- Kazakoff, Stephen H.;
- Davidson, Aimee L.;
- Ramarao-Milne, Priya;
- Lakis, Vanessa;
- Newell, Felicity;
- Rogers, Rebecca;
- Davies, Claire;
- Nicklin, James;
- Garrett, Andrea;
- Chetty, Naven;
- Perrin, Lewis;
- Pearson, John V.
Publication type:
Article
Changes in colon gene expression associated withincreased colon inflammation in interleukin-10gene-deficient mice inoculated with Enterococcusspecies.
Published in:
BMC Immunology, 2010, v. 11, p. 39, doi. 10.1186/1471-2172-11-39
By:
- Barnett, Matthew P. G.;
- McNabb, Warren C.;
- Cookson, Adrian L.;
- Shuotun Zhu;
- Davy, Marcus;
- Knoch, Bianca;
- Nones, Katia;
- Hodgkinson, Alison J.;
- Roy, Nicole C.
Publication type:
Article
Whole-Genome-Sequenzierung von Schleimhautmelanomen zeigt diverse Treiber und therapeutische Targets auf.
Published in:
Kompass Onkologie, 2020, v. 7, n. 3, p. 119, doi. 10.1159/000509960
By:
- Newell, Felicity;
- Kong, Yan;
- Wilmott, James S.;
- Johansson, Peter A.;
- Ferguson, Peter M.;
- Cui, Chuanliang;
- Li, Zhongwu;
- Kazakoff, Stephen H.;
- Burke, Hazel;
- Dodds, Tristan J.;
- Patch, Ann-Marie;
- Nones, Katia;
- Tembe, Varsha;
- Shang, Ping;
- van der Weyden, Louise;
- Wong, Kim;
- Holmes, Oliver;
- Lo, Serigne;
- Leonard, Conrad;
- Wood, Scott
Publication type:
Article
Recommendations for Accurate Resolution of Gene and Isoform Allele-Specific Expression in RNA-Seq Data.
Published in:
PLoS ONE, 2015, v. 10, n. 5, p. 1, doi. 10.1371/journal.pone.0126911
By:
- Wood, David L. A.;
- Nones, Katia;
- Steptoe, Anita;
- Christ, Angelika;
- Harliwong, Ivon;
- Newell, Felicity;
- Bruxner, Timothy J. C.;
- Miller, David;
- Cloonan, Nicole;
- Grimmond, Sean M.
Publication type:
Article
Somatic Point Mutation Calling in Low Cellularity Tumors.
Published in:
PLoS ONE, 2013, v. 8, n. 11, p. 1, doi. 10.1371/journal.pone.0074380
By:
- Kassahn, Karin S.;
- Holmes, Oliver;
- Nones, Katia;
- Patch, Ann-Marie;
- Miller, David K.;
- Christ, Angelika N.;
- Harliwong, Ivon;
- Bruxner, Timothy J.;
- Xu, Qinying;
- Anderson, Matthew;
- Wood, Scott;
- Leonard, Conrad;
- Taylor, Darrin;
- Newell, Felicity;
- Song, Sarah;
- Idrisoglu, Senel;
- Nourse, Craig;
- Nourbakhsh, Ehsan;
- Manning, Suzanne;
- Wani, Shivangi
Publication type:
Article
qpure: A Tool to Estimate Tumor Cellularity from Genome-Wide Single-Nucleotide Polymorphism Profiles.
Published in:
PLoS ONE, 2012, v. 7, n. 9, p. 1, doi. 10.1371/journal.pone.0045835
By:
- Song, Sarah;
- Nones, Katia;
- Miller, David;
- Harliwong, Ivon;
- Kassahn, Karin S.;
- Pinese, Mark;
- Pajic, Marina;
- Gill, Anthony J.;
- Johns, Amber L.;
- Anderson, Matthew;
- Holmes, Oliver;
- Leonard, Conrad;
- Taylor, Darrin;
- Wood, Scott;
- Xu, Qinying;
- Newell, Felicity;
- Cowley, Mark J.;
- Wu, Jianmin;
- Wilson, Peter;
- Fink, Lynn
Publication type:
Article
Maternal Influences on the Transmission of Leukocyte Gene Expression Profiles in Population Samples from Brisbane, Australia.
Published in:
PLoS ONE, 2010, v. 5, n. 12, p. 1, doi. 10.1371/journal.pone.0014479
By:
- Mason, Elizabeth;
- Tronc, Graham;
- Nones, Katia;
- Matigian, Nick;
- Kim, Jinhee;
- Aronow, Bruce J.;
- Wolfinger, Russell D.;
- Wells, Christine;
- Gibson, Greg
Publication type:
Article
Next-Generation Sequencing of Endobronchial Ultrasound Transbronchial Needle Aspiration Specimens in Lung Cancer.
Published in:
2017
By:
- Fielding, David;
- Dalley, Andrew J.;
- Bashirzadeh, Farzad;
- Singh, Mahendra;
- Nandakumar, Lakshmy;
- McCart Reed, Amy E.;
- Black, Debra;
- Kazakoff, Stephen;
- Nones, Katia;
- Pearson, John;
- Waddell, Nic;
- Lakhani, Sunil R.;
- Simpson, Peter T.
Publication type:
Letter
Using whole-genome sequencing data to derive the homologous recombination deficiency scores.
Published in:
NPJ Breast Cancer, 2020, v. 6, n. 1, p. 1, doi. 10.1038/s41523-020-0172-0
By:
- de Luca, Xavier M.;
- Newell, Felicity;
- Kazakoff, Stephen H.;
- Hartel, Gunter;
- McCart Reed, Amy E.;
- Holmes, Oliver;
- Xu, Qinying;
- Wood, Scott;
- Leonard, Conrad;
- Pearson, John V.;
- Lakhani, Sunil R.;
- Waddell, Nicola;
- Nones, Katia;
- Simpson, Peter T.
Publication type:
Article
Whole Genome Sequencing in Advanced Lung Cancer can be Performed Using Diff-Quik Cytology Smears Derived from Endobronchial Ultrasound, Transbronchial Needle Aspiration (EBUS TBNA).
Published in:
Lung, 2023, v. 201, n. 4, p. 407, doi. 10.1007/s00408-023-00631-9
By:
- Fielding, David;
- Dalley, Andrew J.;
- Singh, Mahendra;
- Nandakumar, Lakshmy;
- Lakis, Vanessa;
- Chittoory, Haarika;
- Fairbairn, David;
- Ferguson, Kaltin;
- Bashirzadeh, Farzad;
- Bint, Michael;
- Pahoff, Carl;
- Son, Jung Hwa;
- Hodgson, Alan;
- Pearson, John V.;
- Waddell, Nicola;
- Lakhani, Sunil R.;
- Hartel, Gunter;
- Nones, Katia;
- Simpson, Peter T.
Publication type:
Article
Whole-genome landscape of mucosal melanoma reveals diverse drivers and therapeutic targets.
Published in:
Nature Communications, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41467-019-11107-x
By:
- Newell, Felicity;
- Kong, Yan;
- Wilmott, James S.;
- Johansson, Peter A.;
- Ferguson, Peter M.;
- Cui, Chuanliang;
- Li, Zhongwu;
- Kazakoff, Stephen H.;
- Burke, Hazel;
- Dodds, Tristan J.;
- Patch, Ann-Marie;
- Nones, Katia;
- Tembe, Varsha;
- Shang, Ping;
- van der Weyden, Louise;
- Wong, Kim;
- Holmes, Oliver;
- Lo, Serigne;
- Leonard, Conrad;
- Wood, Scott
Publication type:
Article
Correction: McCart Reed et al. The Genomic Landscape of Lobular Breast Cancer. Cancers 2021, 13 , 1950.
Published in:
2021
By:
- McCart Reed, Amy E.;
- Foong, Samuel;
- Kutasovic, Jamie R.;
- Nones, Katia;
- Waddell, Nicola;
- Lakhani, Sunil R.;
- Simpson, Peter T.
Publication type:
Correction Notice
Exploiting Clonal Evolution to Improve the Diagnosis and Treatment Efficacy Prediction in Pediatric AML.
Published in:
Cancers, 2021, v. 13, n. 9, p. 1995, doi. 10.3390/cancers13091995
By:
- Bertuccio, Salvatore Nicola;
- Anselmi, Laura;
- Masetti, Riccardo;
- Lonetti, Annalisa;
- Cerasi, Sara;
- Polidori, Sara;
- Serravalle, Salvatore;
- Pession, Andrea;
- Nones, Katia
Publication type:
Article
The Genomic Landscape of Lobular Breast Cancer.
Published in:
Cancers, 2021, v. 13, n. 8, p. 1950, doi. 10.3390/cancers13081950
By:
- McCart Reed, Amy E.;
- Foong, Samuel;
- Kutasovic, Jamie R.;
- Nones, Katia;
- Waddell, Nicola;
- Lakhani, Sunil R.;
- Simpson, Peter T.;
- Jonkers, Jos
Publication type:
Article
Next Generation Sequencing Technology in the Clinic and Its Challenges.
Published in:
Cancers, 2021, v. 13, n. 8, p. 1751, doi. 10.3390/cancers13081751
By:
- Vestergaard, Lau K.;
- Oliveira, Douglas N. P.;
- Høgdall, Claus K.;
- Høgdall, Estrid V.;
- Nones, Katia
Publication type:
Article
The Impact of Next Generation Sequencing in Cancer Research.
Published in:
2020
By:
- Nones, Katia;
- Patch, Ann-Marie
Publication type:
Editorial
Intratumoural Heterogeneity Underlies Distinct Therapy Responses and Treatment Resistance in Glioblastoma.
Published in:
Cancers, 2019, v. 11, n. 2, p. 190, doi. 10.3390/cancers11020190
By:
- Akgül, Seçkin;
- Patch, Ann-Marie;
- D'Souza, Rochelle C.J.;
- Mukhopadhyay, Pamela;
- Nones, Katia;
- Kempe, Sarah;
- Kazakoff, Stephen H.;
- Jeffree, Rosalind L.;
- Stringer, Brett W.;
- Pearson, John V.;
- Waddell, Nicola;
- Day, Bryan W.
Publication type:
Article
Complex structural rearrangements are present in high-grade dysplastic Barrett's oesophagus samples.
Published in:
BMC Medical Genomics, 2019, v. 12, n. 1, p. 1, doi. 10.1186/s12920-019-0476-9
By:
- Newell, Felicity;
- Patel, Kalpana;
- Gartside, Michael;
- Krause, Lutz;
- Brosda, Sandra;
- Aoude, Lauren G.;
- Loffler, Kelly A.;
- Bonazzi, Vanessa F.;
- Patch, Ann-Marie;
- Kazakoff, Stephen H.;
- Holmes, Oliver;
- Xu, Qinying;
- Wood, Scott;
- Leonard, Conrad;
- Lampe, Guy;
- Lord, Reginald V.;
- Whiteman, David C.;
- Pearson, John V.;
- Nones, Katia;
- Waddell, Nicola
Publication type:
Article
Whole genome deep sequencing analysis of cell-free DNA in samples with low tumour content.
Published in:
2022
By:
- Ganesamoorthy, Devika;
- Robertson, Alan James;
- Chen, Wenhan;
- Hall, Michael B.;
- Cao, Minh Duc;
- Ferguson, Kaltin;
- Lakhani, Sunil R.;
- Nones, Katia;
- Simpson, Peter T.;
- Coin, Lachlan J. M.
Publication type:
journal article
Identification of the CIMP-like subtype and aberrant methylation of members of the chromosomal segregation and spindle assembly pathways in esophageal adenocarcinoma.
Published in:
Carcinogenesis, 2016, v. 37, n. 4, p. 356, doi. 10.1093/carcin/bgw018
By:
- Krause, Lutz;
- Nones, Katia;
- Loffler, Kelly A.;
- Nancarrow, Derek;
- Oey, Harald;
- Yue Hang Tang;
- Wayte, Nicola J.;
- Patch, Ann Marie;
- Patel, Kalpana;
- Brosda, Sandra;
- Manning, Suzanne;
- Lampe, Guy;
- Clouston, Andrew;
- Thomas, Janine;
- Stoye, Jens;
- Hussey, Damian J.;
- Watson, David I.;
- Lord, Reginald V.;
- Phillips, Wayne A.;
- Gotley, David
Publication type:
Article
Genomic catastrophes frequently arise in esophageal adenocarcinoma and drive tumorigenesis.
Published in:
Nature Communications, 2014, v. 5, n. 10, p. 5224, doi. 10.1038/ncomms6224
By:
- Nones, Katia;
- Waddell, Nicola;
- Wayte, Nicci;
- Patch, Ann-Marie;
- Bailey, Peter;
- Newell, Felicity;
- Holmes, Oliver;
- Fink, J. Lynn;
- Quinn, Michael C. J.;
- Tang, Yue Hang;
- Lampe, Guy;
- Quek, Kelly;
- Loffler, Kelly A.;
- Manning, Suzanne;
- Idrisoglu, Senel;
- Miller, David;
- Xu, Qinying;
- Waddell, Nick;
- Wilson, Peter J.;
- Bruxner, Timothy J. C.
Publication type:
Article
Imperfect centered miRNA binding sites are common and can mediate repression of target mRNAs.
Published in:
Genome Biology, 2014, v. 15, n. 2, p. R51, doi. 10.1186/gb-2014-15-3-r51
By:
- Martin, Hilary C.;
- Wani, Shivangi;
- Steptoe, Anita L.;
- Krishnan, Keerthana;
- Nones, Katia;
- Nourbakhsh, Ehsan;
- Vlassov, Alexander;
- Grimmond, Sean M.;
- Cloonan, Nicole
Publication type:
Article
MicroRNAs and their isomiRs function cooperatively to target common biological pathways.
Published in:
Genome Biology, 2011, v. 12, n. 12, p. 1, doi. 10.1186/gb-2011-12-12-r126
By:
- Cloonan, Nicole;
- Wani, Shivangi;
- Qinying Xu;
- Jian Gu;
- Kristi Lea;
- Heater, Sheila;
- Barbacioru, Catalin;
- Steptoe, Anita L.;
- Martin, Hilary C.;
- Nourbakhsh, Ehsan;
- Krishnan, Keerthana;
- Gardiner, Brooke;
- Wang, Xiaohui;
- Nones, Katia;
- Steen, Jason A.;
- Matigian, Nicholas A.;
- Wood, David L.;
- Kassahn, Karin S.;
- Waddell, Nic;
- Shepherd, Jill
Publication type:
Article
Estimating the costs of genomic sequencing in cancer control.
Published in:
2020
By:
- Gordon, Louisa G.;
- White, Nicole M.;
- Elliott, Thomas M.;
- Nones, Katia;
- Beckhouse, Anthony G.;
- Rodriguez-Acevedo, Astrid J.;
- Webb, Penelope M.;
- Lee, Xing J.;
- Graves, Nicholas;
- Schofield, Deborah J.
Publication type:
journal article
Verifying explainability of a deep learning tissue classifier trained on RNA-seq data.
Published in:
Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-81773-9
By:
- Yap, Melvyn;
- Johnston, Rebecca L.;
- Foley, Helena;
- MacDonald, Samual;
- Kondrashova, Olga;
- Tran, Khoa A.;
- Nones, Katia;
- Koufariotis, Lambros T.;
- Bean, Cameron;
- Pearson, John V.;
- Trzaskowski, Maciej;
- Waddell, Nicola
Publication type:
Article
Pathogenic germline variants are associated with poor survival in stage III/IV melanoma patients.
Published in:
Scientific Reports, 2020, v. 10, n. 1, p. 1, doi. 10.1038/s41598-020-74956-3
By:
- Aoude, Lauren G.;
- Bonazzi, Vanessa F.;
- Brosda, Sandra;
- Patel, Kalpana;
- Koufariotis, Lambros T.;
- Oey, Harald;
- Nones, Katia;
- Wood, Scott;
- Pearson, John V.;
- Lonie, James M.;
- Arneil, Melissa;
- Atkinson, Victoria;
- Smithers, B. Mark;
- Waddell, Nicola;
- Barbour, Andrew P.
Publication type:
Article
Whole genome sequencing of melanomas in adolescent and young adults reveals distinct mutation landscapes and the potential role of germline variants in disease susceptibility.
Published in:
International Journal of Cancer, 2019, v. 144, n. 5, p. 1049, doi. 10.1002/ijc.31791
By:
- Wilmott, James S.;
- Johansson, Peter A.;
- Newell, Felicity;
- Waddell, Nicola;
- Ferguson, Peter;
- Quek, Camelia;
- Patch, Ann‐Marie;
- Nones, Katia;
- Shang, Ping;
- Pritchard, Antonia L.;
- Kazakoff, Stephen;
- Holmes, Oliver;
- Leonard, Conrad;
- Wood, Scott;
- Xu, Qinying;
- Saw, Robyn P. M.;
- Spillane, Andrew J.;
- Stretch, Jonathan R.;
- Shannon, Kerwin F.;
- Kefford, Richard F.
Publication type:
Article
Genome-wide DNA methylation patterns in pancreatic ductal adenocarcinoma reveal epigenetic deregulation of SLIT-ROBO, ITGA2 and MET signaling.
Published in:
International Journal of Cancer, 2014, v. 135, n. 5, p. 1110, doi. 10.1002/ijc.28765
By:
- Nones, Katia;
- Waddell, Nic;
- Song, Sarah;
- Patch, Ann‐Marie;
- Miller, David;
- Johns, Amber;
- Wu, Jianmin;
- Kassahn, Karin S.;
- Wood, David;
- Bailey, Peter;
- Fink, Lynn;
- Manning, Suzanne;
- Christ, Angelika N.;
- Nourse, Craig;
- Kazakoff, Stephen;
- Taylor, Darrin;
- Leonard, Conrad;
- Chang, David K.;
- Jones, Marc D.;
- Thomas, Michelle
Publication type:
Article
Corrigendum: Whole-genome characterization of chemoresistant ovarian cancer.
Published in:
2015
By:
- Patch, Ann-Marie;
- Christie, Elizabeth L.;
- Etemadmoghadam, Dariush;
- Garsed, Dale W.;
- George, Joshy;
- Fereday, Sian;
- Nones, Katia;
- Cowin, Prue;
- Alsop, Kathryn;
- Bailey, Peter J.;
- Kassahn, Karin S.;
- Newell, Felicity;
- Quinn, Michael C. J.;
- Kazakoff, Stephen;
- Quek, Kelly;
- Wilhelm-Benartzi, Charlotte;
- Curry, Ed;
- Leong, Huei San;
- Hamilton, Anne;
- Mileshkin, Linda
Publication type:
Correction Notice
Whole-genome characterization of chemoresistant ovarian cancer.
Published in:
Nature, 2015, v. 521, n. 7553, p. 489, doi. 10.1038/nature14410
By:
- Patch, Ann-Marie;
- Christie, Elizabeth L.;
- Etemadmoghadam, Dariush;
- Garsed, Dale W.;
- George, Joshy;
- Fereday, Sian;
- Nones, Katia;
- Cowin, Prue;
- Alsop, Kathryn;
- Bailey, Peter J.;
- Kassahn, Karin S.;
- Newell, Felicity;
- Quinn, Michael C. J.;
- Kazakoff, Stephen;
- Quek, Kelly;
- Wilhelm-Benartzi, Charlotte;
- Curry, Ed;
- Leong, Huei San;
- Hamilton, Anne;
- Mileshkin, Linda
Publication type:
Article
Whole-genome characterization of chemoresistant ovarian cancer.
Published in:
Nature, 2015, v. 521, n. 7553, p. 489, doi. 10.1038/nature14410
By:
- Patch, Ann-Marie;
- Christie, Elizabeth L.;
- Etemadmoghadam, Dariush;
- Garsed, Dale W.;
- George, Joshy;
- Fereday, Sian;
- Nones, Katia;
- Cowin, Prue;
- Alsop, Kathryn;
- Bailey, Peter J.;
- Kassahn, Karin S.;
- Newell, Felicity;
- Quinn, Michael C. J.;
- Kazakoff, Stephen;
- Quek, Kelly;
- Wilhelm-Benartzi, Charlotte;
- Curry, Ed;
- Leong, Huei San;
- Hamilton, Anne;
- Mileshkin, Linda
Publication type:
Article
Whole genomes redefine the mutational landscape of pancreatic cancer.
Published in:
Nature, 2015, v. 518, n. 7540, p. 495, doi. 10.1038/nature14169
By:
- Waddell, Nicola;
- Pajic, Marina;
- Patch, Ann-Marie;
- Chang, David K.;
- Kassahn, Karin S.;
- Bailey, Peter;
- Johns, Amber L.;
- Miller, David;
- Nones, Katia;
- Quek, Kelly;
- Quinn, Michael C. J.;
- Robertson, Alan J.;
- Fadlullah, Muhammad Z. H.;
- Bruxner, Tim J. C.;
- Christ, Angelika N.;
- Harliwong, Ivon;
- Idrisoglu, Senel;
- Manning, Suzanne;
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Publication type:
Article
qmotif: determination of telomere content from whole-genome sequence data.
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Bioinformatics Advances, 2022, v. 2, n. 1, p. 1, doi. 10.1093/bioadv/vbac005
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Publication type:
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Clinical and molecular characterization of HER2 amplified-pancreatic cancer.
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Genome Medicine, 2013, v. 5, n. 8, p. 1, doi. 10.1186/gm482
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- Patch, Ann-Marie;
- Nones, Katia;
- Wu, Jianmin;
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- Johns, Amber L.;
- Miller, David K.;
- Kassahn, Karin S.;
- Nagrial, Adnan M.;
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- Goldstein, David;
- Toon, Christopher W.;
- Chin, Venessa;
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- Humphris, Jeremy;
- Scott Mead, R.
Publication type:
Article
Evaluating Diff‐Quik cytology smears for large‐panel mutation testing in lung cancer—Predicting DNA content and success with low‐malignant‐cellularity samples.
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Cancer Cytopathology, 2023, v. 131, n. 6, p. 373, doi. 10.1002/cncy.22690
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- Waddell, Nicola;
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Publication type:
Article
Early Changes in CD4+ T-Cell Activation During Blood-Stage Plasmodium falciparum Infection.
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2018
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- Waddell, Nicola;
- Amante, Fiona H;
- McCarthy, James S;
- Montes de Oca, Marcela;
- de Labastida Rivera, Fabian;
- Engwerda, Christian R
Publication type:
journal article
Diff-Quik Cytology Smears from Endobronchial Ultrasound Transbronchial Needle Aspiration Lymph Node Specimens as a Source of DNA for Next-Generation Sequencing Instead of Cell Blocks.
Published in:
Respiration, 2019, v. 97, n. 6, p. 525, doi. 10.1159/000495661
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- Simpson, Peter T.;
- Lakhani, Sunil R.;
- Singh, Mahendra;
- Nandakumar, Lakshmy;
- Kazakoff, Stephen;
- Pearson, John V.;
- Nones, Katia;
- Waddell, Nicola
Publication type:
Article
Whole-genome sequencing of acral melanoma reveals genomic complexity and diversity.
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Nature Communications, 2020, v. 11, n. 1, p. 1, doi. 10.1038/s41467-020-18988-3
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- Nones, Katia;
- Addala, Venkateswar;
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- Broit, Natasa;
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- Van Gulick, Robert;
- Kazakoff, Stephen H.;
- Patch, Ann-Marie;
- Koufariotis, Lambros T.;
- Lakis, Vanessa;
- Leonard, Conrad;
- Wood, Scott;
- Holmes, Oliver;
- Xu, Qinying;
- Lewis, Karl;
- Medina, Theresa;
- Gonzalez, Rene
Publication type:
Article
Lost in translation: returning germline genetic results in genome-scale cancer research.
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Genome Medicine, 2017, v. 9, p. 1, doi. 10.1186/s13073-017-0430-4
By:
- Johns, Amber L.;
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- Chantrill, Lorraine A.;
- Mead, R. Scott;
- Tucker, Katherine;
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- Leonard, Conrad;
- High, Hilda A.;
- Nones, Katia;
- Patch, Ann-Marie;
- Merrett, Neil D.;
- Pavlakis, Nick;
- Kassahn, Karin S.;
- Samra, Jaswinder S.;
- Miller, David K.;
- Chang, David K.;
- Pajic, Marina
Publication type:
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Germline and somatic variant identification using BGISEQ-500 and HiSeq X Ten whole genome sequencing.
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PLoS ONE, 2018, v. 13, n. 1, p. 1, doi. 10.1371/journal.pone.0190264
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- Patch, Ann-Marie;
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- Kazakoff, Stephen H.;
- Newell, Felicity;
- Wood, Scott;
- Leonard, Conrad;
- Holmes, Oliver;
- Xu, Qinying;
- Addala, Venkateswar;
- Creaney, Jenette;
- Robinson, Bruce W.;
- Fu, Shujin;
- Geng, Chunyu;
- Li, Tong;
- Zhang, Wenwei;
- Liang, Xinming;
- Rao, Junhua;
- Wang, Jiahao;
- Tian, Mingyu;
- Zhao, Yonggang
Publication type:
Article
RON is not a prognostic marker for resectable pancreatic cancer.
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BMC Cancer, 2012, v. 12, n. 1, p. 395, doi. 10.1186/1471-2407-12-395
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- Tactacan, Carole M.;
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- Cowley, Mark J.;
- Humphrey, Emily S.;
- Wu, Jianmin;
- Gill, Anthony J.;
- Chou, Angela;
- Nones, Katia;
- Grimmond, Sean M.;
- Sutherland, Robert L.;
- Biankin, Andrew V.;
- Daly, Roger J.
Publication type:
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