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Editorial: Computational Epitranscriptomics: Bioinformatic Approaches for the Analysis of RNA Modifications.
- Published in:
- 2020
- By:
- Publication type:
- Editorial
Thousands of human non-AUG extended proteoforms lack evidence of evolutionary selection among mammals.
- Published in:
- Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-35595-6
- By:
- Publication type:
- Article
Sequences that direct significant levels of frameshifting are frequent in coding regions of Escherichia coli.
- Published in:
- EMBO Journal, 2003, v. 22, n. 21, p. 5941, doi. 10.1093/emboj/cdg561
- By:
- Publication type:
- Article
Cellular Gene Expression during Hepatitis C Virus Replication as Revealed by Ribosome Profiling.
- Published in:
- International Journal of Molecular Sciences, 2019, v. 20, n. 6, p. 1321, doi. 10.3390/ijms20061321
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- Publication type:
- Article
Maintenance of the correct open reading frame by the ribosome.
- Published in:
- EMBO Reports, 2003, v. 4, n. 5, p. 499, doi. 10.1038/sj.embor.embor825
- By:
- Publication type:
- Article
Release factor 2 frameshifting sites in different bacteria.
- Published in:
- 2002
- By:
- Publication type:
- Report
The Distinction Between Recoding and Codon Reassignment.
- Published in:
- 2010
- By:
- Publication type:
- Letter
Translation of 5' leaders is pervasive in genes resistant to eIF2 repression.
- Published in:
- eLife, 2015, p. 1, doi. 10.7554/eLife.03971.001
- By:
- Publication type:
- Article
Trips-Viz: a transcriptome browser for exploring Ribo-Seq data.
- Published in:
- Nucleic Acids Research, 2019, v. 47, n. D1, p. D847, doi. 10.1093/nar/gky842
- By:
- Publication type:
- Article
GWIPS-viz: 2018 update.
- Published in:
- Nucleic Acids Research, 2018, v. 46, n. D1, p. D823, doi. 10.1093/nar/gkx790
- By:
- Publication type:
- Article
Specific reverse transcriptase slippage at the HIV ribosomal frameshift sequence: potential implications for modulation of GagPol synthesis.
- Published in:
- Nucleic Acids Research, 2017, v. 45, n. 17, p. 10156, doi. 10.1093/nar/gkx690
- By:
- Publication type:
- Article
Stimulation of reverse transcriptase generated cDNAs with specific indels by template RNA structure: retrotransposon, dNTP balance, RT-reagent usage.
- Published in:
- Nucleic Acids Research, 2017, v. 45, n. 17, p. 10143, doi. 10.1093/nar/gkx689
- By:
- Publication type:
- Article
Insights into the mechanisms of eukaryotic translation gained with ribosome profiling.
- Published in:
- Nucleic Acids Research, 2017, v. 45, n. 2, p. 513, doi. 10.1093/nar/gkw1190
- By:
- Publication type:
- Article
Ribosomal frameshifting and transcriptional slippage: From genetic steganography and cryptography to adventitious use.
- Published in:
- Nucleic Acids Research, 2016, v. 44, n. 15, p. 7007, doi. 10.1093/nar/gkw530
- By:
- Publication type:
- Article
Evidence of efficient stop codon readthrough in four mammalian genes.
- Published in:
- Nucleic Acids Research, 2014, v. 42, n. 14, p. 8928, doi. 10.1093/nar/gku608
- By:
- Publication type:
- Article
Analysis of tetra- and hepta-nucleotides motifs promoting -1 ribosomal frameshifting in Escherichia coli.
- Published in:
- Nucleic Acids Research, 2014, v. 42, n. 11, p. 7210, doi. 10.1093/nar/gku386
- By:
- Publication type:
- Article
GWIPS-viz: development of a ribo-seq genome browser.
- Published in:
- Nucleic Acids Research, 2014, v. 42, n. D1, p. D859, doi. 10.1093/nar/gkt1035
- By:
- Publication type:
- Article
Identification of the nature of reading frame transitions observed in prokaryotic genomes.
- Published in:
- Nucleic Acids Research, 2013, v. 41, n. 13, p. 6514, doi. 10.1093/nar/gkt274
- By:
- Publication type:
- Article
Darned in 2013: inclusion of model organisms and linking with Wikipedia.
- Published in:
- Nucleic Acids Research, 2013, v. 41, p. D258, doi. 10.1093/nar/gks961
- By:
- Publication type:
- Article
Identification of evolutionarily conserved non-AUG-initiated N-terminal extensions in human coding sequences.
- Published in:
- Nucleic Acids Research, 2011, v. 39, n. 10, p. 4220, doi. 10.1093/nar/gkr007
- By:
- Publication type:
- Article
Two groups of phenylalanine biosynthetic operon leader peptides genes: a high level of apparently incidental frameshifting in decoding Escherichia coli pheL.
- Published in:
- Nucleic Acids Research, 2011, v. 39, n. 8, p. 3079, doi. 10.1093/nar/gkq1272
- By:
- Publication type:
- Article
Recode-2: new design, new search tools, and many more genes.
- Published in:
- Nucleic Acids Research, 2010, v. 38, p. D69, doi. 10.1093/nar/gkp788
- By:
- Publication type:
- Article
Standardized annotation of translated open reading frames.
- Published in:
- 2022
- By:
- Publication type:
- Letter
Addendum: Thousands of human non-AUG extended proteoforms lack evidence of evolutionary selection among mammals.
- Published in:
- 2024
- By:
- Publication type:
- Correction Notice
Non-AUG translation initiation in mammals.
- Published in:
- Genome Biology, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s13059-022-02674-2
- By:
- Publication type:
- Article
Codon Size Reduction as the Origin of the Triplet Genetic Code.
- Published in:
- PLoS ONE, 2009, v. 4, n. 5, p. 1, doi. 10.1371/journal.pone.0005708
- By:
- Publication type:
- Article
The effect of heterogeneous Transcription Start Sites (TSS) on the translatome: implications for the mammalian cellular phenotype.
- Published in:
- BMC Genomics, 2015, v. 16, p. 1, doi. 10.1186/s12864-015-2179-8
- By:
- Publication type:
- Article
GWIPS-viz as a tool for exploring ribosome profiling evidence supporting the synthesis of alternative proteoforms.
- Published in:
- Proteomics, 2015, v. 15, n. 14, p. 2410, doi. 10.1002/pmic.201400603
- By:
- Publication type:
- Article
Augmented genetic decoding: global, local and temporal alterations of decoding processes and codon meaning.
- Published in:
- 2015
- By:
- Publication type:
- Journal Article
Augmented genetic decoding: global, local and temporal alterations of decoding processes and codon meaning.
- Published in:
- Nature Reviews Genetics, 2015, v. 16, n. 9, p. 517, doi. 10.1038/nrg3963
- By:
- Publication type:
- Article
A frameshift in time: The efficiency with which ribosomes shift reading frames when decoding viral RNA may change over the course of an infection.
- Published in:
- eLife, 2022, p. 1, doi. 10.7554/eLife.78373
- By:
- Publication type:
- Article
Computational approach for calculating the probability of eukaryotic translation initiation from ribo-seq data that takes into account leaky scanning.
- Published in:
- BMC Bioinformatics, 2014, v. 15, n. 1, p. 1, doi. 10.1186/s12859-014-0380-4
- By:
- Publication type:
- Article
Ornithine decarboxylase antizyme finder (OAF): Fast and reliable detection of antizymes with frameshifts in mRNAs.
- Published in:
- 2008
- By:
- Publication type:
- Product Review
Novel Ciliate Genetic Code Variants Including the Reassignment of All Three Stop Codons to Sense Codons in Condylostoma magnum.
- Published in:
- Molecular Biology & Evolution, 2016, v. 33, n. 11, p. 2885, doi. 10.1093/molbev/msw166
- By:
- Publication type:
- Article
A Pilot Study of Bacterial Genes with Disrupted ORFs Reveals a Surprising Profusion of Protein Sequence Recoding Mediated by Ribosomal Frameshifting and Transcriptional Realignment.
- Published in:
- Molecular Biology & Evolution, 2011, v. 28, n. 11, p. 3195, doi. 10.1093/molbev/msr155
- By:
- Publication type:
- Article
Translation: Duality in the genetic code.
- Published in:
- Nature, 2007, v. 448, n. 7157, p. 1004, doi. 10.1038/4481004a
- By:
- Publication type:
- Article
Simplicity DiffExpress : A Bespoke Cloud-Based Interface for RNA-seq Differential Expression Modeling and Analysis.
- Published in:
- Frontiers in Genetics, 2019, p. N.PAG, doi. 10.3389/fgene.2019.00356
- By:
- Publication type:
- Article
RECODE 2003.
- Published in:
- Nucleic Acids Research, 2003, v. 31, n. 1, p. 87, doi. 10.1093/nar/gkg024
- By:
- Publication type:
- Article
RECODE: a database of frameshifting, bypassing and codon redefinition utilized for gene expression.
- Published in:
- Nucleic Acids Research, 2001, v. 29, n. 1, p. 264, doi. 10.1093/nar/29.1.264
- By:
- Publication type:
- Article
The Database of Ribosomal Cross‐links: an update.
- Published in:
- Nucleic Acids Research, 1999, v. 27, n. 1, p. 184, doi. 10.1093/nar/27.1.184
- By:
- Publication type:
- Article
The Database of Ribosomal Cross links (DRC).
- Published in:
- Nucleic Acids Research, 1998, v. 26, n. 1, p. 189
- By:
- Publication type:
- Article
A new technique for the characterization of long-range tertiary contacts in large RNA molecules: insertion of a photolabel at a selected position in 16S rRNA within the Escherichia coli ribosome.
- Published in:
- Nucleic Acids Research, 1997, v. 25, n. 12, p. 2266, doi. 10.1093/nar/25.12.2266
- By:
- Publication type:
- Article
Ghrelin rapidly elevates protein synthesis in vitro by employing the rpS6K-eEF2K-eEF2 signalling axis.
- Published in:
- Cellular & Molecular Life Sciences, 2022, v. 79, n. 8, p. 1, doi. 10.1007/s00018-022-04446-4
- By:
- Publication type:
- Article
Comparative survey of the relative impact of mRNA features on local ribosome profiling read density.
- Published in:
- Nature Communications, 2016, v. 7, n. 10, p. 12915, doi. 10.1038/ncomms12915
- By:
- Publication type:
- Article
Oxygen and glucose deprivation induces widespread alterations in mRNA translation within 20 minutes.
- Published in:
- Genome Biology, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s13059-015-0651-z
- By:
- Publication type:
- Article
Molecular biology: Antibiotic re-frames decoding.
- Published in:
- Nature, 2013, v. 503, n. 7477, p. 478, doi. 10.1038/503478a
- By:
- Publication type:
- Article
ARFA: a program for annotating bacterial release factor genes, including prediction of programmed ribosomal frameshifting.
- Published in:
- Bioinformatics, 2006, v. 22, n. 20, p. 2463, doi. 10.1093/bioinformatics/btl430
- By:
- Publication type:
- Article
Trips-Viz: an environment for the analysis of public and user-generated ribosome profiling data.
- Published in:
- Nucleic Acids Research, 2021, v. 49, n. W1, p. W662, doi. 10.1093/nar/gkab323
- By:
- Publication type:
- Article
Identification and characterization of hippuristanol-resistant mutants reveals eIF4A1 dependencies within mRNA 5′ leader regions.
- Published in:
- Nucleic Acids Research, 2020, v. 48, n. 17, p. 9521, doi. 10.1093/nar/gkaa662
- By:
- Publication type:
- Article
Opposite Expression Patterns of Spry3 and p75NTR in Cerebellar Vermis Suggest a Male-Specific Mechanism of Autism Pathogenesis.
- Published in:
- Frontiers in Psychiatry, 2019, p. N.PAG, doi. 10.3389/fpsyt.2019.00416
- By:
- Publication type:
- Article