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- Title
Breakpoint Surveyor: a pipeline for structural variant visualization.
- Authors
Wyczalkowski, Matthew A.; Wylie, Kristine M.; Song Cao; McLellan, Michael D.; Flynn, Jennifer; Mo Huang; Kai Ye; Xian Fan; Ken Chen; Wendl, Michael C.; Li Ding
- Abstract
BreakPoint Surveyor (BPS) is a computational pipeline for the discovery, characterization, and visualization of complex genomic rearrangements, such as viral genome integration, in paired-end sequence data. BPS facilitates interpretation ofstructural variants by merging structural variant breakpoint predictions, gene exon structure, read depth, and RNA-sequencing expression into a single comprehensive figure.
- Subjects
STRUCTURAL genomics; RNA sequencing; GENE expression; HUMAN genome; BIOLOGICAL variation; SEQUENCE alignment
- Publication
Bioinformatics, 2017, Vol 33, Issue 19, p3121
- ISSN
1367-4803
- Publication type
Article
- DOI
10.1093/bioinformatics/btx362