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Electrostatic hot spot on DNA-binding domains mediates phosphate desolvation and the pre-organization of specificity determinant side chains.
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- Nucleic Acids Research, 2010, v. 38, n. 7, p. 2134, doi. 10.1093/nar/gkp1132
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The human telomeric protein hTRF1 induces telomere-specific nucleosome mobility.
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- Nucleic Acids Research, 2010, v. 38, n. 7, p. 2247, doi. 10.1093/nar/gkp1228
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RNPC1 modulates the RNA-binding activity of, and cooperates with, HuR to regulate p21 mRNA stability.
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- Nucleic Acids Research, 2010, v. 38, n. 7, p. 2256, doi. 10.1093/nar/gkp1229
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Yeast arginine methyltransferase Hmt1p regulates transcription elongation and termination by methylating Npl3p.
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- Nucleic Acids Research, 2010, v. 38, n. 7, p. 2217, doi. 10.1093/nar/gkp1133
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Incorporating sequence quality data into alignment improves DNA read mapping.
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- Nucleic Acids Research, 2010, v. 38, n. 7, p. e100, doi. 10.1093/nar/gkq010
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Subscriptions.
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- Nucleic Acids Research, 2010, v. 38, n. 7, p. iii, doi. 10.1093/nar/gkq290
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Nucleic Acids Research.
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- Nucleic Acids Research, 2010, v. 38, n. 7, p. i, doi. 10.1093/nar/gkq289
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- Article
Commandeering a biological pathway using aptamer-derived molecular adaptors.
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- Nucleic Acids Research, 2010, v. 38, n. 7, p. e93, doi. 10.1093/nar/gkp1207
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A unified genetic, computational and experimental framework identifies functionally relevant residues of the homing endonuclease I-BmoI.
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- Nucleic Acids Research, 2010, v. 38, n. 7, p. 2411, doi. 10.1093/nar/gkp1223
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Differential coregulator requirements for function of the hematopoietic transcription factor GATA-1 at endogenous loci.
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- Nucleic Acids Research, 2010, v. 38, n. 7, p. 2190, doi. 10.1093/nar/gkp1159
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Differential stability of 2′F-ANA•RNA and ANA•RNA hybrid duplexes: roles of structure, pseudohydrogen bonding, hydration, ion uptake and flexibility.
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- Nucleic Acids Research, 2010, v. 38, n. 7, p. 2498, doi. 10.1093/nar/gkp1225
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Increased origin activity in transformed versus normal cells: identification of novel protein players involved in DNA replication and cellular transformation.
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- Nucleic Acids Research, 2010, v. 38, n. 7, p. 2314, doi. 10.1093/nar/gkp1192
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- Article
Zip nucleic acids are potent hydrolysis probes for quantitative PCR.
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- Nucleic Acids Research, 2010, v. 38, n. 7, p. e95, doi. 10.1093/nar/gkp1218
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Glycosylases and AP-cleaving enzymes as a general tool for probe-directed cleavage of ssDNA targets.
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- Nucleic Acids Research, 2010, v. 38, n. 7, p. e99, doi. 10.1093/nar/gkp1238
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Anatomy of mouse recombination hot spots.
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- Nucleic Acids Research, 2010, v. 38, n. 7, p. 2346, doi. 10.1093/nar/gkp1251
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Waved aCGH: to smooth or not to smooth.
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- Nucleic Acids Research, 2010, v. 38, n. 7, p. e94
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Nucleic Acids Research.
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- Nucleic Acids Research, 2010, v. 38, n. 7, p. ii, doi. 10.1093/nar/gkq288
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- Article
Homologous over-extension: a challenge for iterative similarity searches.
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- Nucleic Acids Research, 2010, v. 38, n. 7, p. 2177, doi. 10.1093/nar/gkp1219
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Protein arginine methyltransferase 6 regulates multiple aspects of gene expression.
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- Nucleic Acids Research, 2010, v. 38, n. 7, p. 2201, doi. 10.1093/nar/gkp1203
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Fluorescent probes for the analysis of DNA strand scission in base excision repair.
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- Nucleic Acids Research, 2010, v. 38, n. 7, p. e101, doi. 10.1093/nar/gkq022
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The ribosome assembly factor Nep1 responsible for Bowen–Conradi syndrome is a pseudouridine-N1-specific methyltransferase.
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- Nucleic Acids Research, 2010, v. 38, n. 7, p. 2387, doi. 10.1093/nar/gkp1189
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A novel mechanism for the scission of double-stranded DNA: BfiI cuts both 3′–5′ and 5′–3′ strands by rotating a single active site.
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- Nucleic Acids Research, 2010, v. 38, n. 7, p. 2399, doi. 10.1093/nar/gkp1194
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Tfold: efficient in silico prediction of non-coding RNA secondary structures.
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- Nucleic Acids Research, 2010, v. 38, n. 7, p. 2453, doi. 10.1093/nar/gkp1067
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DotKnot: pseudoknot prediction using the probability dot plot under a refined energy model.
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- Nucleic Acids Research, 2010, v. 38, n. 7, p. e103, doi. 10.1093/nar/gkq021
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Investigating the role of the Est3 protein in yeast telomere replication.
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- Nucleic Acids Research, 2010, v. 38, n. 7, p. 2279, doi. 10.1093/nar/gkp1173
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On the detection and refinement of transcription factor binding sites using ChIP-Seq data.
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- Nucleic Acids Research, 2010, v. 38, n. 7, p. 2154, doi. 10.1093/nar/gkp1180
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Analysis of the impact of a uracil DNA glycosylase attenuated in AP-DNA binding in maintenance of the genomic integrity in Escherichia coli.
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- Nucleic Acids Research, 2010, v. 38, n. 7, p. 2291, doi. 10.1093/nar/gkp1210
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Quadruplex structures of muscle gene promoter sequences enhance in vivo MyoD-dependent gene expression.
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- Nucleic Acids Research, 2010, v. 38, n. 7, p. 2369, doi. 10.1093/nar/gkp1208
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Estimating the proportion of microarray probes expressed in an RNA sample.
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- Nucleic Acids Research, 2010, v. 38, n. 7, p. 2168, doi. 10.1093/nar/gkp1204
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Quality measures for protein alignment benchmarks.
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- Nucleic Acids Research, 2010, v. 38, n. 7, p. 2145, doi. 10.1093/nar/gkp1196
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Genome-wide identification of hypoxia-inducible factor binding sites and target genes by a probabilistic model integrating transcription-profiling data and in silico binding site prediction.
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- Nucleic Acids Research, 2010, v. 38, n. 7, p. 2332, doi. 10.1093/nar/gkp1205
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Functional cooperation between CREM and GCNF directs gene expression in haploid male germ cells.
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- Nucleic Acids Research, 2010, v. 38, n. 7, p. 2268, doi. 10.1093/nar/gkp1220
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A sensitive non-radioactive northern blot method to detect small RNAs.
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- Nucleic Acids Research, 2010, v. 38, n. 7, p. e98, doi. 10.1093/nar/gkp1235
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An RNA-based transcription activator derived from an inhibitory aptamer.
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- Nucleic Acids Research, 2010, v. 38, n. 7, p. 2378, doi. 10.1093/nar/gkp1227
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Custom human endogenous retroviruses dedicated microarray identifies self-induced HERV-W family elements reactivated in testicular cancer upon methylation control.
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- Nucleic Acids Research, 2010, v. 38, n. 7, p. 2229, doi. 10.1093/nar/gkp1214
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Efficient integration of transgenes into a defined locus in human embryonic stem cells.
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- Nucleic Acids Research, 2010, v. 38, n. 7, p. e96, doi. 10.1093/nar/gkp1234
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A truncated DNA-damage-signaling response is activated after DSB formation in the G1 phase of Saccharomyces cerevisiae.
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- Nucleic Acids Research, 2010, v. 38, n. 7, p. 2302, doi. 10.1093/nar/gkp1222
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Genome comparison and context analysis reveals putative mobile forms of restriction–modification systems and related rearrangements.
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- Nucleic Acids Research, 2010, v. 38, n. 7, p. 2428, doi. 10.1093/nar/gkp1226
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Streamlined determination of processive run length and mechanochemical coupling of nucleic acid motor activities.
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- Nucleic Acids Research, 2010, v. 38, n. 7, p. e102, doi. 10.1093/nar/gkq014
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The DNA binding and 3′-end preferential activity of human tyrosyl-DNA phosphodiesterase.
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- Nucleic Acids Research, 2010, v. 38, n. 7, p. 2444, doi. 10.1093/nar/gkp1206
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MBNL1 binds GC motifs embedded in pyrimidines to regulate alternative splicing.
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- Nucleic Acids Research, 2010, v. 38, n. 7, p. 2467, doi. 10.1093/nar/gkp1209
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DNA supercoiling and its role in DNA decatenation and unknotting.
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- Nucleic Acids Research, 2010, v. 38, n. 7, p. 2119, doi. 10.1093/nar/gkp1161
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Impact of probe annotation on the integration of miRNA–mRNA expression profiles for miRNA target detection.
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- Nucleic Acids Research, 2010, v. 38, n. 7, p. e97, doi. 10.1093/nar/gkp1239
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Location analysis for the estrogen receptor-α reveals binding to diverse ERE sequences and widespread binding within repetitive DNA elements.
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- Nucleic Acids Research, 2010, v. 38, n. 7, p. 2355, doi. 10.1093/nar/gkp1188
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Insight into the induction mechanism of the GntR/HutC bacterial transcription regulator YvoA.
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- Nucleic Acids Research, 2010, v. 38, n. 7, p. 2485, doi. 10.1093/nar/gkp1191
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