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An investig-ation into the epidemiology of chikungunya virus across neglected regions of Indonesia.
- Published in:
- PLoS Neglected Tropical Diseases, 2020, v. 14, n. 12, p. 1, doi. 10.1371/journal.pntd.0008934
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- Publication type:
- Article
Evaluation of respondent-driven sampling in seven studies of people who use drugs from rural populations: findings from the Rural Opioid Initiative.
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- BMC Medical Research Methodology, 2024, v. 24, n. 1, p. 1, doi. 10.1186/s12874-024-02206-5
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- Publication type:
- Article
Model design for nonparametric phylodynamic inference and applications to pathogen surveillance.
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- Virus Evolution, 2023, v. 9, n. 1, p. 1, doi. 10.1093/ve/vead028
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- Publication type:
- Article
Phylodynamics of Infectious Disease Epidemics.
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- Genetics, 2009, v. 183, n. 4, p. 1421, doi. 10.1534/genetics.109.106021
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- Publication type:
- Article
Phylogenomic analysis uncovers a 9-year variation of Uganda influenza type-A strains from the WHO-recommended vaccines and other Africa strains.
- Published in:
- Scientific Reports, 2023, v. 13, n. 1, p. 1, doi. 10.1038/s41598-023-30667-z
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- Publication type:
- Article
Molecular epidemiology of dengue in a setting of low reported endemicity: Kupang, East Nusa Tenggara province, Indonesia.
- Published in:
- Transactions of the Royal Society of Tropical Medicine & Hygiene, 2021, v. 115, n. 11, p. 1304, doi. 10.1093/trstmh/trab138
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- Publication type:
- Article
Residual HIV Type 1 RNA and DNA in Lymph Nodes and HIV RNA in Genital Secretions and in Cerebrospinal Fluid after Suppression of Viremia for 2 Years.
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- Journal of Infectious Diseases, 2001, v. 183, n. 9, p. 1318
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- Publication type:
- Article
Respondent Driven Sampling: Determinants of Recruitment and a Method to Improve Point Estimation.
- Published in:
- PLoS ONE, 2013, v. 8, n. 10, p. 1, doi. 10.1371/journal.pone.0078402
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- Publication type:
- Article
Genetic Imprint of Vaccination on Simian/Human Immunodeficiency Virus Type 1 Transmitted Viral Genomes in Rhesus Macaques.
- Published in:
- PLoS ONE, 2013, v. 8, n. 8, p. 1, doi. 10.1371/journal.pone.0070814
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- Publication type:
- Article
Mixed Adjuvant Formulations Reveal a New Combination That Elicit Antibody Response Comparable to Freund's Adjuvants.
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- PLoS ONE, 2012, v. 7, n. 4, p. 1, doi. 10.1371/journal.pone.0035083
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- Publication type:
- Article
Transmitted Drug Resistance in the CFAR Network of Integrated Clinical Systems Cohort: Prevalence and Effects on Pre-Therapy CD4 and Viral Load.
- Published in:
- PLoS ONE, 2011, v. 6, n. 6, p. 1, doi. 10.1371/journal.pone.0021189
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- Publication type:
- Article
Parsing Social Network Survey Data from Hidden Populations Using Stochastic Context-Free Grammars.
- Published in:
- PLoS ONE, 2009, v. 4, n. 9, p. 1, doi. 10.1371/journal.pone.0006777
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- Publication type:
- Article
Modeling and analyzing respondent-driven sampling as a counting process.
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- Biometrics, 2017, v. 73, n. 4, p. 1189, doi. 10.1111/biom.12678
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- Publication type:
- Article
Surveys, Serologies, and Sequences Reveal History of Iatrogenic Transmission of HIV-1.
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- 2016
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- Publication type:
- Editorial
Understanding Drivers of Phylogenetic Clustering in Molecular Epidemiological Studies of HIV.
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- 2015
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- Publication type:
- Editorial
Long-Term Persistence of Transmitted HIV Drug Resistance in Male Genital Tract Secretions: Implications for Secondary Transmission.
- Published in:
- Journal of Infectious Diseases, 2007, v. 196, n. 3, p. 356, doi. 10.1086/519164
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- Publication type:
- Article
Herpes Simplex Virus Type 2 Infection Does Not Influence Viral Dynamics during Early HIV-1 Infection.
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- Journal of Infectious Diseases, 2007, v. 195, n. 9, p. 1270, doi. 10.1086/513568
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- Publication type:
- Article
The role of venues in structuring HIV, sexually transmitted infections, and risk networks among men who have sex with men.
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- 2018
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- Publication type:
- journal article
Syringe possession arrests are associated with receptive syringe sharing in two Mexico–US border cities.
- Published in:
- Addiction, 2008, v. 103, n. 1, p. 101, doi. 10.1111/j.1360-0443.2007.02051.x
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- Publication type:
- Article
Differences in epidemiology of enteropathogens in children pre- and post-rotavirus vaccine introduction in Kilifi, coastal Kenya.
- Published in:
- Gut Pathogens, 2022, v. 14, n. 1, p. 1, doi. 10.1186/s13099-022-00506-z
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- Publication type:
- Article
HyPhy 2.5—A Customizable Platform for Evolutionary Hypothesis Testing Using Phylogenies.
- Published in:
- Molecular Biology & Evolution, 2020, v. 37, n. 1, p. 295, doi. 10.1093/molbev/msz197
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- Publication type:
- Article
Neutral Theory and Rapidly Evolving Viral Pathogens.
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- Molecular Biology & Evolution, 2018, v. 35, n. 6, p. 1348, doi. 10.1093/molbev/msy088
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- Publication type:
- Article
Molecular Epidemiology and Evolutionary Dynamics of Human Influenza Type-A Viruses in Africa: A Systematic Review.
- Published in:
- Microorganisms, 2022, v. 10, n. 5, p. 900, doi. 10.3390/microorganisms10050900
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- Publication type:
- Article
Phylogenetic Characterization of Crimean-Congo Hemorrhagic Fever Virus Detected in African Blue Ticks Feeding on Cattle in a Ugandan Abattoir.
- Published in:
- Microorganisms, 2021, v. 9, n. 2, p. 438, doi. 10.3390/microorganisms9020438
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- Publication type:
- Article
Individual and Network Factors Associated With Prevalent Hepatitis C Infection Among Rural Appalachian Injection Drug Users.
- Published in:
- American Journal of Public Health, 2013, v. 103, n. 1, p. e44, doi. 10.2105/AJPH.2012.300874
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- Publication type:
- Article
Adaptation to Human Populations Is Revealed by Within-Host Polymorphisms in HIV-1 and Hepatitis C Virus.
- Published in:
- PLoS Pathogens, 2007, v. 3, n. 3, p. 0409, doi. 10.1371/journal.ppat.0030045
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- Publication type:
- Article
Measuring Asymmetry in Time-Stamped Phylogenies.
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- PLoS Computational Biology, 2015, v. 11, n. 7, p. 1, doi. 10.1371/journal.pcbi.1004312
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- Publication type:
- Article
Inferring the Source of Transmission with Phylogenetic Data.
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- PLoS Computational Biology, 2013, v. 9, n. 12, p. 1, doi. 10.1371/journal.pcbi.1003397
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- Publication type:
- Article
Simple Epidemiological Dynamics Explain Phylogenetic Clustering of HIV from Patients with Recent Infection.
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- PLoS Computational Biology, 2012, v. 8, n. 6, p. 1, doi. 10.1371/journal.pcbi.1002552
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- Publication type:
- Article
An Evolutionary Model-Based Algorithm for Accurate Phylogenetic Breakpoint Mapping and Subtype Prediction in HIV-1.
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- PLoS Computational Biology, 2009, v. 5, n. 11, p. 1, doi. 10.1371/journal.pcbi.1000581
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- Publication type:
- Article
An Evolutionary-Network Model Reveals Stratified Interactions in the V3 Loop of the HIV-1 Envelope.
- Published in:
- PLoS Computational Biology, 2007, v. 3, n. 11, p. e231, doi. 10.1371/journal.pcbi.0030231
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- Publication type:
- Article
Evolutionary Interactions between N-Linked Glycosylation Sites in the HIV-1 Envelope.
- Published in:
- PLoS Computational Biology, 2007, v. 3, n. 1, p. 110, doi. 10.1371/journal.pcbi.0030011
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- Publication type:
- Article
Adaptation to Different Human Populations by HIV-1 Revealed by Codon-Based Analyses.
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- PLoS Computational Biology, 2006, v. 2, n. 6, p. e62, doi. 10.1371/journal.pcbi.0020062
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- Publication type:
- Article
Genome-Wide Patterns of Gene Expression in a Wild Primate Indicate Species-Specific Mechanisms Associated with Tolerance to Natural Simian Immunodeficiency Virus Infection.
- Published in:
- Genome Biology & Evolution, 2019, v. 11, n. 6, p. 1630, doi. 10.1093/gbe/evz099
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- Publication type:
- Article
Intersection of Syphilis and Human Immunodeficiency Virus (HIV) Networks to Identify Opportunities to Enhance HIV Prevention.
- Published in:
- Clinical Infectious Diseases, 2022, v. 74, n. 3, p. 498, doi. 10.1093/cid/ciab431
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- Publication type:
- Article
Molecular and Contextual Markers of Hepatitis C Virus and Drug Abuse.
- Published in:
- Molecular Diagnosis & Therapy, 2009, v. 13, n. 3, p. 153, doi. 10.1007/BF03256323
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- Publication type:
- Article
Assessment of a multiplex PCR and Nanopore-based method for dengue virus sequencing in Indonesia.
- Published in:
- Virology Journal, 2020, v. 17, n. 1, p. 1, doi. 10.1186/s12985-020-1294-6
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- Publication type:
- Article
Can Non-lytic CD8+ T Cells Drive HIV-1 Escape?
- Published in:
- PLoS Pathogens, 2013, v. 9, n. 11, p. 1, doi. 10.1371/journal.ppat.1003656
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- Publication type:
- Article
Deep Molecular Characterization of HIV-1 Dynamics under Suppressive HAART.
- Published in:
- PLoS Pathogens, 2011, v. 7, n. 10, p. 1, doi. 10.1371/journal.ppat.1002314
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- Publication type:
- Article
A Maximum Likelihood Method for Detecting Directional Evolution in Protein Sequences and Its Application to Influenza A Virus.
- Published in:
- Molecular Biology & Evolution, 2008, v. 25, n. 9, p. 1809, doi. 10.1093/molbev/msn123
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- Publication type:
- Article
Evolutionary Model Selection with a Genetic Algorithm: A Case Study Using Stem RNA.
- Published in:
- Molecular Biology & Evolution, 2007, v. 24, n. 1, p. 159
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- Publication type:
- Article
Automated Phylogenetic Detection of Recombination Using a Genetic Algorithm.
- Published in:
- Molecular Biology & Evolution, 2006, v. 23, n. 10, p. 1891, doi. 10.1093/molbev/msl051
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- Publication type:
- Article
Not So Different After All: A Comparison of Methods for Detecting Amino Acid Sites Under Selection.
- Published in:
- Molecular Biology & Evolution, 2005, v. 22, n. 5, p. 1208, doi. 10.1093/molbev/msi105
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- Publication type:
- Article
A Genetic Algorithm Approach to Detecting Lineage-Specific Variation in Selection Pressure.
- Published in:
- Molecular Biology & Evolution, 2005, v. 22, n. 3, p. 478, doi. 10.1093/molbev/msi031
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- Publication type:
- Article
A Simple Hierarchical Approach to Modeling Distributions of Substitution Rates.
- Published in:
- Molecular Biology & Evolution, 2005, v. 22, n. 2, p. 223, doi. 10.1093/molbev/msi009
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- Publication type:
- Article
Assessing Commitment and Reporting Fidelity to a Text Message-Based Participatory Surveillance in Rural Western Uganda.
- Published in:
- PLoS ONE, 2016, v. 11, n. 6, p. 1, doi. 10.1371/journal.pone.0155971
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- Publication type:
- Article
Identification of Hidden Population Structure in Time-Scaled Phylogenies.
- Published in:
- Systematic Biology, 2020, v. 69, n. 5, p. 884, doi. 10.1093/sysbio/syaa009
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- Publication type:
- Article
HyPhy: hypothesis testing using phylogenies.
- Published in:
- Bioinformatics, 2005, v. 21, n. 5, p. 676
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- Publication type:
- Article
VGEA: an RNA viral assembly toolkit.
- Published in:
- PeerJ, 2021, p. 1, doi. 10.7717/peerj.12129
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- Publication type:
- Article
Fast hierarchical Bayesian analysis of population structure.
- Published in:
- Nucleic Acids Research, 2019, v. 47, n. 11, p. 5539, doi. 10.1093/nar/gkz361
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- Publication type:
- Article