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Inter-comparison of marine microbiome sampling protocols.
Published in:
ISME Communications, 2023, v. 3, n. 1, p. 1, doi. 10.1038/s43705-023-00278-w
By:
- Pascoal, Francisco;
- Tomasino, Maria Paola;
- Piredda, Roberta;
- Quero, Grazia Marina;
- Torgo, Luís;
- Poulain, Julie;
- Galand, Pierre E.;
- Fuhrman, Jed A.;
- Mitchell, Alex;
- Tinta, Tinkara;
- Turk Dermastia, Timotej;
- Fernandez-Guerra, Antonio;
- Vezzi, Alessandro;
- Logares, Ramiro;
- Malfatti, Francesca;
- Endo, Hisashi;
- Dąbrowska, Anna Maria;
- De Pascale, Fabio;
- Sánchez, Pablo;
- Henry, Nicolas
Publication type:
Article
Community-curated and standardised metadata of published ancient metagenomic samples with AncientMetagenomeDir.
Published in:
Scientific Data, 2021, v. 8, n. 1, p. 1, doi. 10.1038/s41597-021-00816-y
By:
- Fellows Yates, James A.;
- Andrades Valtueña, Aida;
- Vågene, Åshild J.;
- Cribdon, Becky;
- Velsko, Irina M.;
- Borry, Maxime;
- Bravo-Lopez, Miriam J.;
- Fernandez-Guerra, Antonio;
- Green, Eleanor J.;
- Ramachandran, Shreya L.;
- Heintzman, Peter D.;
- Spyrou, Maria A.;
- Hübner, Alexander;
- Gancz, Abigail S.;
- Hider, Jessica;
- Allshouse, Aurora F.;
- Zaro, Valentina;
- Warinner, Christina
Publication type:
Article
Genomic adaptation of giant viruses in polar oceans.
Published in:
Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-41910-6
By:
- Meng, Lingjie;
- Delmont, Tom O.;
- Gaïa, Morgan;
- Pelletier, Eric;
- Fernàndez-Guerra, Antonio;
- Chaffron, Samuel;
- Neches, Russell Y.;
- Wu, Junyi;
- Kaneko, Hiroto;
- Endo, Hisashi;
- Ogata, Hiroyuki
Publication type:
Article
Genomic evidence for global ocean plankton biogeography shaped by large-scale current systems.
Published in:
eLife, 2022, p. 1, doi. 10.7554/eLife.78129
By:
- Richter, Daniel J.;
- Watteaux, Romain;
- Vannier, Thomas;
- Leconte, Jade;
- Frémont, Paul;
- Reygondeau, Gabriel;
- Maillet, Nicolas;
- Henry, Nicolas;
- Benoit, Gaëtan;
- Da Silva, Ophélie;
- Delmont, Tom O.;
- Fernàndez-Guerra, Antonio;
- Suweis, Samir;
- Narci, Romain;
- Berney, Cédric;
- Eveillard, Damien;
- Gavory, Frederick;
- Guidi, Lionel;
- Labadie, Karine;
- Mahieu, Eric
Publication type:
Article
Molecular recognition of the beta‐glucans laminarin and pustulan by a SusD‐like glycan‐binding protein of a marine Bacteroidetes.
Published in:
FEBS Journal, 2018, v. 285, n. 23, p. 4465, doi. 10.1111/febs.14674
By:
- Mystkowska, Agata Anna;
- Robb, Craig;
- Vidal‐Melgosa, Silvia;
- Vanni, Chiara;
- Fernandez‐Guerra, Antonio;
- Höhne, Matthias;
- Hehemann, Jan‐Hendrik
Publication type:
Article
Fast and accurate average genome size and 16S rRNA gene average copy number computation in metagenomic data.
Published in:
BMC Bioinformatics, 2019, v. 20, n. 1, p. N.PAG, doi. 10.1186/s12859-019-3031-y
By:
- Pereira-Flores, Emiliano;
- Glöckner, Frank Oliver;
- Fernandez-Guerra, Antonio
Publication type:
Article
BioVeL: a virtual laboratory for data analysis and modelling in biodiversity science and ecology.
Published in:
BMC Ecology, 2016, v. 16, p. 1, doi. 10.1186/s12898-016-0103-y
By:
- Hardisty, Alex R.;
- Bacall, Finn;
- Beard, Niall;
- Balcázar-Vargas, Maria-Paula;
- Balech, Bachir;
- Barcza, Zoltán;
- Bourlat, Sarah J.;
- De Giovanni, Renato;
- de Jong, Yde;
- De Leo, Francesca;
- Dobor, Laura;
- Donvito, Giacinto;
- Fellows, Donal;
- Fernandez Guerra, Antonio;
- Ferreira, Nuno;
- Yuliya Fetyukova;
- Fosso, Bruno;
- Giddy, Jonathan;
- Goble, Carole;
- Güntsch, Anton
Publication type:
Article
Meta-SourceTracker: application of Bayesian source tracking to shotgun metagenomics.
Published in:
PeerJ, 2020, p. 1, doi. 10.7717/peerj.8783
By:
- McGhee, Jordan J.;
- Rawson, Nick;
- Bailey, Barbara A.;
- Fernandez-Guerra, Antonio;
- Sisk-Hackworth, Laura;
- Kelley, Scott T.
Publication type:
Article
The ocean sampling day consortium.
Published in:
GigaScience, 2015, v. 4, n. 1, p. 25, doi. 10.1186/s13742-015-0066-5
By:
- Kopf, Anna;
- Bicak, Mesude;
- Kottmann, Renzo;
- Schnetzer, Julia;
- Kostadinov, Ivaylo;
- Lehmann, Katja;
- Fernandez-Guerra, Antonio;
- Jeanthon, Christian;
- Rahav, Eyal;
- Ullrich, Matthias;
- Wichels, Antje;
- Gerdts, Gunnar;
- Polymenakou, Paraskevi;
- Kotoulas, Giorgos;
- Siam, Rania;
- Abdallah, Rehab Z.;
- Sonnenschein, Eva C.;
- Cariou, Thierry;
- O'Gara, Fergal;
- Jackson, Stephen
Publication type:
Article
Comparative Genomic Analysis Reveals a Diverse Repertoire of Genes Involved in Prokaryote-Eukaryote Interactions within the Pseudovibrio Genus.
Published in:
Frontiers in Microbiology, 2016, p. 1, doi. 10.3389/fmicb.2016.00387
By:
- Romano, Stefano;
- Fernàndez-Guerra, Antonio;
- Reen, F. Jerry;
- Glöckner, Frank O.;
- Crowley, Susan P.;
- O'Sullivan, Orla;
- Cotter, Paul D.;
- Adams, Claire;
- Dobson, Alan D. W.;
- O'Gara, Fergal;
- Li Sun;
- Roux, Simon
Publication type:
Article
T-RFPred: a nucleotide sequence size prediction tool for microbial community description based on terminal-restriction fragment lengthpolymorphism chromatograms.
Published in:
BMC Microbiology, 2010, v. 10, p. 262, doi. 10.1186/1471-2180-10-262
By:
- Fernàndez-Guerra, Antonio;
- Buchan, Alison;
- Xiaozhen Mou;
- Casamayor, Emilio O.;
- González, José M.
Publication type:
Article

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