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Oral swabs as a proxy for direct ruminal microbiome sampling in Holstein dairy cows is correlated with sample color.
Published in:
Frontiers in Microbiology, 2024, p. 1, doi. 10.3389/fmicb.2024.1466375
By:
- Skarlupka, Joseph H.;
- Cox, Madison S.;
- Steinberger, Andrew J.;
- Sbardellati, Dino L.;
- McClure, Jennifer C.;
- Bickhart, Derek M.;
- Scheftgen, Andrew J.;
- Zuniga-Chaves, Ibrahim;
- Wolfe, Luke A.;
- Paget, Eric;
- Skadron, Charles;
- Attipetty, Nithya;
- Suen, Garret
Publication type:
Article
Structural variant-based pangenome construction has low sensitivity to variability of haplotype-resolved bovine assemblies.
Published in:
Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-30680-2
By:
- Leonard, Alexander S.;
- Crysnanto, Danang;
- Fang, Zih-Hua;
- Heaton, Michael P.;
- Vander Ley, Brian L.;
- Herrera, Carolina;
- Bollwein, Heinrich;
- Bickhart, Derek M.;
- Kuhn, Kristen L.;
- Smith, Timothy P. L.;
- Rosen, Benjamin D.;
- Pausch, Hubert
Publication type:
Article
New insights into mammalian sex chromosome structure and evolution using high-quality sequences from bovine X and Y chromosomes.
Published in:
BMC Genomics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12864-019-6364-z
By:
- Liu, Ruijie;
- Low, Wai Yee;
- Tearle, Rick;
- Koren, Sergey;
- Ghurye, Jay;
- Rhie, Arang;
- Phillippy, Adam M.;
- Rosen, Benjamin D.;
- Bickhart, Derek M.;
- Smith, Timothy P. L.;
- Hiendleder, Stefan;
- Williams, John L.
Publication type:
Article
Comparative Analysis of CNV Calling Algorithms: Literature Survey and a Case Study Using Bovine High-Density SNP Data.
Published in:
Microarrays (2076-3905), 2013, v. 2, n. 3, p. 171, doi. 10.3390/microarrays2030171
By:
- Lingyang Xu;
- Yali Hou;
- Bickhart, Derek M.;
- Jiuzhou Song;
- Liu, George E.
Publication type:
Article
Generating lineage-resolved, complete metagenome-assembled genomes from complex microbial communities.
Published in:
Nature Biotechnology, 2022, v. 40, n. 5, p. 711, doi. 10.1038/s41587-021-01130-z
By:
- Bickhart, Derek M.;
- Kolmogorov, Mikhail;
- Tseng, Elizabeth;
- Portik, Daniel M.;
- Korobeynikov, Anton;
- Tolstoganov, Ivan;
- Uritskiy, Gherman;
- Liachko, Ivan;
- Sullivan, Shawn T.;
- Shin, Sung Bong;
- Zorea, Alvah;
- Andreu, Victòria Pascal;
- Panke-Buisse, Kevin;
- Medema, Marnix H.;
- Mizrahi, Itzhak;
- Pevzner, Pavel A.;
- Smith, Timothy P. L.
Publication type:
Article
De novo assembly of haplotype-resolved genomes with trio binning.
Published in:
Nature Biotechnology, 2018, v. 36, n. 12, p. 1174, doi. 10.1038/nbt.4277
By:
- Koren, Sergey;
- Rhie, Arang;
- Walenz, Brian P;
- Dilthey, Alexander T;
- Bickhart, Derek M;
- Kingan, Sarah B;
- Hiendleder, Stefan;
- Williams, John L;
- Smith, Timothy P L;
- Phillippy, Adam M
Publication type:
Article
Erratum to: A Reference Genome Assembly of Simmental Cattle, Bos taurus taurus.
Published in:
Journal of Heredity, 2021, v. 112, n. 6, p. 565, doi. 10.1093/jhered/esab039
By:
- Heaton, Michael P;
- Smith, Timothy P L;
- Bickhart, Derek M;
- Ley, Brian L Vander;
- Kuehn, Larry A;
- Oppenheimer, Jonas;
- Shafer, Wade R;
- Schuetze, Fred T;
- Stroud, Brad;
- McClure, Jennifer C;
- Barfield, Jennifer P;
- Blackburn, Harvey D;
- Kalbfleisch, Theodore S;
- Davenport, Kimberly M;
- Kuhn, Kristen L;
- Green, Richard E;
- Shapiro, Beth;
- Rosen, Benjamin D
Publication type:
Article
A Reference Genome Assembly of American Bison, Bison bison bison.
Published in:
Journal of Heredity, 2021, v. 112, n. 2, p. 174, doi. 10.1093/jhered/esab003
By:
- Oppenheimer, Jonas;
- Rosen, Benjamin D;
- Heaton, Michael P;
- Ley, Brian L Vander;
- Shafer, Wade R;
- Schuetze, Fred T;
- Stroud, Brad;
- Kuehn, Larry A;
- McClure, Jennifer C;
- Barfield, Jennifer P;
- Blackburn, Harvey D;
- Kalbfleisch, Theodore S;
- Bickhart, Derek M;
- Davenport, Kimberly M;
- Kuhn, Kristen L;
- Green, Richard E;
- Shapiro, Beth;
- Smith, Timothy P L
Publication type:
Article
A Reference Genome Assembly of Simmental Cattle, Bos taurus taurus.
Published in:
Journal of Heredity, 2021, v. 112, n. 2, p. 184, doi. 10.1093/jhered/esab002
By:
- Heaton, Michael P;
- Smith, Timothy P L;
- Bickhart, Derek M;
- Ley, Brian L Vander;
- Kuehn, Larry A;
- Oppenheimer, Jonas;
- Shafer, Wade R;
- Schuetze, Fred T;
- Stroud, Brad;
- McClure, Jennifer C;
- Barfield, Jennifer P;
- Blackburn, Harvey D;
- Kalbfleisch, Theodore S;
- Davenport, Kimberly M;
- Kuhn, Kristen L;
- Green, Richard E;
- Shapiro, Beth;
- Rosen, Benjamin D
Publication type:
Article
Comparative analyses across cattle genders and breeds reveal the pitfalls caused by false positive and lineage-differential copy number variations.
Published in:
Scientific Reports, 2016, p. 29219, doi. 10.1038/srep29219
By:
- Zhou, Yang;
- Utsunomiya, Yuri T.;
- Xu, Lingyang;
- Hay, El Hamidi abdel;
- Bickhart, Derek M.;
- Sonstegard, Tad S.;
- Van Tassell, Curtis P.;
- Garcia, Jose Fernando;
- Liu, George E.
Publication type:
Article
Population-genetic properties of differentiated copy number variations in cattle.
Published in:
Scientific Reports, 2016, p. 23161, doi. 10.1038/srep23161
By:
- Xu, Lingyang;
- Hou, Yali;
- Bickhart, Derek M.;
- Zhou, Yang;
- Hay, El Hamidi abdel;
- Song, Jiuzhou;
- Sonstegard, Tad S.;
- Van Tassell, Curtis P.;
- Liu, George E.
Publication type:
Article
An improved ovine reference genome assembly to facilitate in-depth functional annotation of the sheep genome.
Published in:
GigaScience, 2022, v. 11, p. 1, doi. 10.1093/gigascience/giab096
By:
- Davenport, Kimberly M;
- Bickhart, Derek M;
- Worley, Kim;
- Murali, Shwetha C;
- Salavati, Mazdak;
- Clark, Emily L;
- Cockett, Noelle E;
- Heaton, Michael P;
- Smith, Timothy P L;
- Murdoch, Brenda M;
- Rosen, Benjamin D
Publication type:
Article
Continuous chromosome-scale haplotypes assembled from a single interspecies F1 hybrid of yak and cattle.
Published in:
GigaScience, 2020, v. 9, n. 4, p. N.PAG, doi. 10.1093/gigascience/giaa029
By:
- Rice, Edward S;
- Koren, Sergey;
- Rhie, Arang;
- Heaton, Michael P;
- Kalbfleisch, Theodore S;
- Hardy, Timothy;
- Hackett, Peter H;
- Bickhart, Derek M;
- Rosen, Benjamin D;
- Ley, Brian Vander;
- Maurer, Nicholas W;
- Green, Richard E;
- Phillippy, Adam M;
- Petersen, Jessica L;
- Smith, Timothy P L
Publication type:
Article
De novo assembly of the cattle reference genome with single-molecule sequencing.
Published in:
GigaScience, 2020, v. 9, n. 3, p. N.PAG, doi. 10.1093/gigascience/giaa021
By:
- Rosen, Benjamin D;
- Bickhart, Derek M;
- Schnabel, Robert D;
- Koren, Sergey;
- Elsik, Christine G;
- Tseng, Elizabeth;
- Rowan, Troy N;
- Low, Wai Y;
- Zimin, Aleksey;
- Couldrey, Christine;
- Hall, Richard;
- Li, Wenli;
- Rhie, Arang;
- Ghurye, Jay;
- McKay, Stephanie D;
- Thibaud-Nissen, Françoise;
- Hoffman, Jinna;
- Murdoch, Brenda M;
- Snelling, Warren M;
- McDaneld, Tara G
Publication type:
Article
Comparative whole genome DNA methylation profiling of cattle sperm and somatic tissues reveals striking hypomethylated patterns in sperm.
Published in:
GigaScience, 2018, v. 7, n. 5, p. N.PAG, doi. 10.1093/gigascience/giy039
By:
- Zhou, Yang;
- Connor, Erin E;
- Bickhart, Derek M;
- Li, Congjun;
- Baldwin, Ransom L;
- Schroeder, Steven G;
- Rosen, Benjamin D;
- Yang, Liguo;
- Van Tassell, Curtis P;
- Liu, George E
Publication type:
Article
Reduced representation bisulphite sequencing of ten bovine somatic tissues reveals DNA methylation patterns and their impacts on gene expression.
Published in:
BMC Genomics, 2016, v. 17, p. 1, doi. 10.1186/s12864-016-3116-1
By:
- Yang Zhou;
- Lingyang Xu;
- Bickhart, Derek M.;
- abdel Hay, El Hamidi;
- Schroeder, Steven G.;
- Connor, Erin E.;
- Alexander, Leeson J.;
- Sonstegard, Tad S.;
- Van Tassell, Curtis P.;
- Hong Chen;
- Liu, George E.
Publication type:
Article
Revealing misassembled segments in the bovine reference genome by high resolution linkage disequilibrium scan.
Published in:
BMC Genomics, 2016, v. 17, p. 1, doi. 10.1186/s12864-016-3049-8
By:
- Utsunomiya, Adam T. H.;
- Santos, Daniel J. A.;
- Boison, Solomon A.;
- Utsunomiya, Yuri T.;
- Milanesi, Marco;
- Bickhart, Derek M.;
- Ajmone-Marsan, Paolo;
- Sölkner, Johann;
- Garcia, José F.;
- da Fonseca, Ricardo;
- da Silva, Marcos V. G. B.
Publication type:
Article
Genome-wide CNV analysis reveals variants associated with growth traits in Bos indicus.
Published in:
BMC Genomics, 2016, v. 17, p. 1, doi. 10.1186/s12864-016-2461-4
By:
- Yang Zhou;
- Utsunomiya, Yuri T.;
- Lingyang Xu;
- El Hamidi abdel Hay;
- Bickhart, Derek M.;
- Alexandre, Pamela Almeida;
- Rosen, Benjamin D.;
- Schroeder, Steven G.;
- Carvalheiro, Roberto;
- de Rezende Neves, Haroldo Henrique;
- Sonstegard, Tad S.;
- Van Tassell, Curtis P.;
- Ferraz, José Bento Sterman;
- Fukumasu, Heidge;
- Garcia, Jose Fernando;
- Liu, George E.
Publication type:
Article
Chromosome-level assembly of the water buffalo genome surpasses human and goat genomes in sequence contiguity.
Published in:
Nature Communications, 2019, v. 10, n. 1, p. 1, doi. 10.1038/s41467-018-08260-0
By:
- Low, Wai Yee;
- Tearle, Rick;
- Bickhart, Derek M.;
- Rosen, Benjamin D.;
- Kingan, Sarah B.;
- Swale, Thomas;
- Thibaud-Nissen, Françoise;
- Murphy, Terence D.;
- Young, Rachel;
- Lefevre, Lucas;
- Hume, David A.;
- Collins, Andrew;
- Ajmone-Marsan, Paolo;
- Smith, Timothy P. L.;
- Williams, John L.
Publication type:
Article
Butyrate Induced IGF2 Activation Correlated with Distinct Chromatin Signatures Due to Histone Modification.
Published in:
Gene Regulation & Systems Biology, 2013, n. 7, p. 57, doi. 10.4137/GRSB.S11243
By:
- Joo Heon Shin;
- Robert W. Li;
- Yuan Gao;
- Bickhart, Derek M.;
- Liu, George E.;
- Weizhong Li;
- Sitao Wu;
- Cong-jun Li
Publication type:
Article
Insertion sequence content reflects genome plasticity in strains of the root nodule actinobacterium Frankia.
Published in:
BMC Genomics, 2009, v. 10, p. 468, doi. 10.1186/1471-2164-10-468
By:
- Bickhart, Derek M.;
- Gogarten, Johann P.;
- Lapierre, Pascal;
- Tisa, Louis S.;
- Normand, Philippe;
- Benson, David R.
Publication type:
Article
Genomic Signatures Reveal New Evidences for Selection of Important Traits in Domestic Cattle.
Published in:
Molecular Biology & Evolution, 2015, v. 32, n. 3, p. 711, doi. 10.1093/molbev/msu333
By:
- Xu, Lingyang;
- Bickhart, Derek M.;
- Cole, John B.;
- Schroeder, Steven G.;
- Song, Jiuzhou;
- Tassell, Curtis P. Van;
- Sonstegard, Tad S.;
- Liu, George E.
Publication type:
Article
Computational detection and experimental validation of segmental duplications and associated copy number variations in water buffalo (Bubalus bubalis).
Published in:
Functional & Integrative Genomics, 2019, v. 19, n. 3, p. 409, doi. 10.1007/s10142-019-00657-4
By:
- Liu, Shuli;
- Kang, Xiaolong;
- Catacchio, Claudia R.;
- Liu, Mei;
- Fang, Lingzhao;
- Schroeder, Steven G.;
- Li, Wenli;
- Rosen, Benjamin D.;
- Iamartino, Daniela;
- Iannuzzi, Leopoldo;
- Sonstegard, Tad S.;
- Van Tassell, Curtis P.;
- Ventura, Mario;
- Low, Wai Yee;
- Williams, John L.;
- Bickhart, Derek M.;
- Liu, George E.
Publication type:
Article
Annotated Draft Genome Assemblies for the Northern Bobwhite (Colinus virginianus) and the Scaled Quail (Callipepla squamata) Reveal Disparate Estimates of Modern Genome Diversity and Historic Effective Population Size.
Published in:
G3: Genes | Genomes | Genetics, 2017, v. 7, n. 9, p. 3047, doi. 10.1534/g3.117.043083
By:
- Oldeschulte, David L.;
- Halley, Yvette A.;
- Wilson, Miranda L.;
- Bhattarai, Eric K.;
- Brashear, Wesley;
- Hill, Joshua;
- Metz, Richard P.;
- Johnson, Charles D.;
- Rollins, Dale;
- Peterson, Markus J.;
- Bickhart, Derek M.;
- Decker, Jared E.;
- Sewell, John F.;
- Seabury, Christopher M.
Publication type:
Article
Defining the caprine γδ T cell WC1 multigenic array and evaluation of its expressed sequences and gene structure conservation among goat breeds and relative to cattle.
Published in:
Immunogenetics, 2022, v. 74, n. 3, p. 347, doi. 10.1007/s00251-022-01254-9
By:
- Yirsaw, Alehegne W.;
- Gillespie, Alexandra;
- Zhang, Fengqiu;
- Smith, Timothy P. L.;
- Bickhart, Derek M.;
- Gunasekaran, Karthick P.;
- Amir, Maria;
- Park, Haeree;
- Telfer, Janice C.;
- Baldwin, Cynthia L.
Publication type:
Article
Characterization of the domestic goat γδ T cell receptor gene loci and gene usage.
Published in:
Immunogenetics, 2021, v. 73, n. 2, p. 187, doi. 10.1007/s00251-021-01203-y
By:
- Gillespie, Alexandria;
- Yirsaw, Al;
- Gunasekaran, Karthick P.;
- Smith, Timothy P.;
- Bickhart, Derek M.;
- Turley, Michael;
- Connelley, Timothy;
- Telfer, Janice C.;
- Baldwin, Cynthia L.
Publication type:
Article
The Bovine Pangenome Consortium: democratizing production and accessibility of genome assemblies for global cattle breeds and other bovine species.
Published in:
2023
By:
- Smith, Timothy P. L.;
- Bickhart, Derek M.;
- Boichard, Didier;
- Chamberlain, Amanda J.;
- Djikeng, Appolinaire;
- Jiang, Yu;
- Low, Wai Y.;
- Pausch, Hubert;
- Demyda-Peyrás, Sebastian;
- Prendergast, James;
- Schnabel, Robert D.;
- Rosen, Benjamin D.
Publication type:
Letter
Systematic Profiling of Short Tandem Repeats in the Cattle Genome.
Published in:
Genome Biology & Evolution, 2017, v. 9, n. 1, p. 20, doi. 10.1093/gbe/evw256
By:
- Lingyang Xu;
- Haasl, Ryan J.;
- Jiajie Sun;
- Yang Zhou;
- Bickhart, Derek M.;
- Junya Li;
- Jiuzhou Song;
- Sonstegard, Tad S.;
- Van Tassell, Curtis P.;
- Lewin, Harris A.;
- Liu, George E.
Publication type:
Article
Genomic predictions combining SNP markers and copy number variations in Nellore cattle.
Published in:
BMC Genomics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12864-018-4787-6
By:
- Hay, El Hamidi A.;
- Utsunomiya, Yuri T.;
- Lingyang Xu;
- Yang Zhou;
- Neves, Haroldo H. R.;
- Carvalheiro, Roberto;
- Bickhart, Derek M.;
- Li Ma;
- Garcia, Jose Fernando;
- Liu, George E.
Publication type:
Article
Selecting sequence variants to improve genomic predictions for dairy cattle.
Published in:
Genetics Selection Evolution, 2017, v. 49, p. 1, doi. 10.1186/s12711-017-0307-4
By:
- VanRaden, Paul M.;
- Tooker, Melvin E.;
- O'Connell, Jeffrey R.;
- Cole, John B.;
- Bickhart, Derek M.
Publication type:
Article
Convergent Evolution of Slick Coat in Cattle through Truncation Mutations in the Prolactin Receptor.
Published in:
Frontiers in Genetics, 2018, p. 1, doi. 10.3389/fgene.2018.00057
By:
- Porto-Neto, Laercio R.;
- Bickhart, Derek M.;
- Landaeta-Hernandez, Antonio J.;
- Utsunomiya, Yuri T.;
- Pagan, Melvin;
- Jimenez, Esbal;
- Hansen, Peter J.;
- Dikmen, Serdal;
- Schroeder, Steven G.;
- Kim, Eui-Soo;
- Sun, Jiajie;
- Crespo, Edward;
- Amati, Norman;
- Cole, John B.;
- Null, Daniel J.;
- Garcia, Jose F.;
- Reverter, Antonio;
- Barendse, William;
- Sonstegard, Tad S.
Publication type:
Article
Cattle Sex-Specific Recombination and Genetic Control from a Large Pedigree Analysis.
Published in:
PLoS Genetics, 2015, v. 11, n. 10, p. 1, doi. 10.1371/journal.pgen.1005387
By:
- Ma, Li;
- O'Connell, Jeffrey R.;
- VanRaden, Paul M.;
- Shen, Botong;
- Padhi, Abinash;
- Sun, Chuanyu;
- Bickhart, Derek M.;
- Cole, John B.;
- Null, Daniel J.;
- Liu, George E.;
- Da, Yang;
- Wiggans, George R.
Publication type:
Article
The antibody loci of the domestic goat (<italic>Capra hircus</italic>).
Published in:
Immunogenetics, 2018, v. 70, n. 5, p. 317, doi. 10.1007/s00251-017-1033-3
By:
- Schwartz, John C.;
- Philp, Rebecca L.;
- Bickhart, Derek M.;
- Smith, Timothy P. L.;
- Hammond, John A.
Publication type:
Article
An Improved, High-quality Ovine Reference Genome Assembly.
Published in:
Journal of Animal Science, 2021, v. 99, p. 23, doi. 10.1093/jas/skab235.039
By:
- Davenport, Kimberly M.;
- Bickhart, Derek M.;
- Worley, Kim;
- Murali, Shwetha C.;
- Cockett, Noelle;
- Heaton, Michael P.;
- Smith, Timothy P. L.;
- Murdoch, Brenda M.;
- Rosen, Benjamin D.
Publication type:
Article
Expression and Variation of the Genes Involved in Rhizobium Nodulation in Red Clover.
Published in:
Plants (2223-7747), 2022, v. 11, n. 21, p. 2888, doi. 10.3390/plants11212888
By:
- Dinkins, Randy D.;
- Hancock, Julie A.;
- Bickhart, Derek M.;
- Sullivan, Michael L.;
- Zhu, Hongyan
Publication type:
Article
Assignment of virus and antimicrobial resistance genes to microbial hosts in a complex microbial community by combined long-read assembly and proximity ligation.
Published in:
Genome Biology, 2019, v. 20, n. 1, p. N.PAG, doi. 10.1186/s13059-019-1760-x
By:
- Bickhart, Derek M.;
- Watson, Mick;
- Koren, Sergey;
- Panke-Buisse, Kevin;
- Cersosimo, Laura M.;
- Press, Maximilian O.;
- Van Tassell, Curtis P.;
- Van Kessel, Jo Ann S.;
- Haley, Bradd J.;
- Kim, Seon Woo;
- Heiner, Cheryl;
- Suen, Garret;
- Bakshy, Kiranmayee;
- Liachko, Ivan;
- Sullivan, Shawn T.;
- Myer, Phillip R.;
- Ghurye, Jay;
- Pop, Mihai;
- Weimer, Paul J.;
- Phillippy, Adam M.
Publication type:
Article
Genome wide CNV analysis reveals additional variants associated with milk production traits in Holsteins.
Published in:
BMC Genomics, 2014, v. 15, n. 1, p. 683, doi. 10.1186/1471-2164-15-683
By:
- Lingyang Xu;
- Cole, John B.;
- Bickhart, Derek M.;
- Yali Hou;
- Jiuzhou Song;
- Van Raden, Paul M.;
- Sonstegard, Tad S.;
- Van Tassell, Curtis P.;
- Liu, George E.
Publication type:
Article
Genomic divergence of zebu and taurine cattle identified through high-density SNP genotyping.
Published in:
BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-876
By:
- Porto-Neto, Laercio R.;
- Sonstegard, Tad S.;
- Liu, George E.;
- Bickhart, Derek M.;
- Silva, MarcosVB Da;
- Machado, Marco A.;
- Utsunomiya, Yuri T.;
- Garcia, Jose F.;
- Gondro, Cedric;
- Van Tassell, Curtis P.
Publication type:
Article
Fine mapping of copy number variations on two cattle genome assemblies using high density SNP array.
Published in:
BMC Genomics, 2012, v. 13, n. 1, p. 1, doi. 10.1186/1471-2164-13-376
By:
- Hou, Yali;
- Bickhart, Derek M.;
- Hvinden, Miranda L.;
- Li, Congjun;
- Song, Jiuzhou;
- Boichard, Didier A.;
- Fritz, Sébastien;
- Eggen, André;
- DeNise, Sue;
- Wiggans, George R.;
- Sonstegard, Tad S.;
- Van Tassell, Curtis P.;
- Liu, George E.
Publication type:
Article
Genomic characteristics of cattle copy number variations.
Published in:
BMC Genomics, 2011, v. 12, p. 1, doi. 10.1186/1471-2164-12-127
By:
- Hou, Yali;
- Liu, George E;
- Bickhart, Derek M;
- Cardone, Maria Francesca;
- Wang, Kai;
- Kim, Eui-soo;
- Matukumalli, Lakshmi K;
- Ventura, Mario;
- Song, Jiuzhou;
- VanRaden, Paul M;
- Sonstegard, Tad S;
- Van Tassell, Curt P
Publication type:
Article
Genomic characteristics of cattle copy number variations.
Published in:
BMC Genomics, 2011, v. 12, n. 1, p. 127, doi. 10.1186/1471-2164-12-127
By:
- Yali Hou;
- Liu, George E.;
- Bickhart, Derek M.;
- Cardone, Maria Francesca;
- Kai Wang;
- Eui-soo Kim;
- Matukumalli, Lakshmi K.;
- Ventura, Mario;
- Jiuzhou Song;
- VanRaden, Paul M.;
- Sonstegard, Tad S.;
- Van Tassell, Curt P.
Publication type:
Article
Assessing signatures of selection through variation in linkage disequilibrium between taurine and indicine cattle.
Published in:
Genetics Selection Evolution, 2014, v. 46, p. 1, doi. 10.1186/1297-9686-46-19
By:
- O'Brien, Ana M. Pérez;
- Utsunomiya, Yuri T.;
- Mészáros, Gábor;
- Bickhart, Derek M.;
- Liu, George E.;
- Van Tassell, Curtis P.;
- Sonstegardv, Tad S.;
- Da Silva, Marcos V. B.;
- Garcia, José Fernando;
- Sölkner, Johann
Publication type:
Article
RAPTR-SV: a hybrid method for the detection of structural variants.
Published in:
Bioinformatics, 2015, v. 31, n. 13, p. 2084, doi. 10.1093/bioinformatics/btv086
By:
- Bickhart, Derek M.;
- Hutchison, Jana L.;
- Lingyang Xu;
- Schnabel, Robert D.;
- Taylor, Jeremy F.;
- Reecy, James M.;
- Schroeder, Steven;
- Van Tassell, Curt P.;
- Sonstegard, Tad S.;
- Liu, George E.
Publication type:
Article
Haplotype-resolved genomes provide insights into structural variation and gene content in Angus and Brahman cattle.
Published in:
Nature Communications, 2020, v. 11, n. 1, p. 1, doi. 10.1038/s41467-020-15848-y
By:
- Low, Wai Yee;
- Tearle, Rick;
- Liu, Ruijie;
- Koren, Sergey;
- Rhie, Arang;
- Bickhart, Derek M.;
- Rosen, Benjamin D.;
- Kronenberg, Zev N.;
- Kingan, Sarah B.;
- Tseng, Elizabeth;
- Thibaud-Nissen, Françoise;
- Martin, Fergal J.;
- Billis, Konstantinos;
- Ghurye, Jay;
- Hastie, Alex R.;
- Lee, Joyce;
- Pang, Andy W. C.;
- Heaton, Michael P.;
- Phillippy, Adam M.;
- Hiendleder, Stefan
Publication type:
Article
Diversity and population-genetic properties of copy number variations and multicopy genes in cattle.
Published in:
DNA Research, 2016, v. 23, n. 3, p. 253, doi. 10.1093/dnares/dsw013
By:
- Bickhart, Derek M.;
- Lingyang Xu;
- Hutchison, Jana L.;
- Cole, John B.;
- Null, Daniel J.;
- Schroeder, Steven G.;
- Jiuzhou Song;
- Garcia, Jose Fernando;
- Sonstegard, Tad S.;
- Van Tassell, Curtis P.;
- Schnabel, Robert D.;
- Taylor, Jeremy F.;
- Lewin, Harris A.;
- Liu, George E.
Publication type:
Article
Gaur genome reveals expansion of sperm odorant receptors in domesticated cattle.
Published in:
BMC Genomics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12864-022-08561-1
By:
- Low, Wai Yee;
- Rosen, Benjamin D.;
- Ren, Yan;
- Bickhart, Derek M.;
- To, Thu-Hien;
- Martin, Fergal J.;
- Billis, Konstantinos;
- Sonstegard, Tad S.;
- Sullivan, Shawn T.;
- Hiendleder, Stefan;
- Williams, John L.;
- Heaton, Michael P.;
- Smith, Timothy P. L.
Publication type:
Article

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