Found: 28

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  • The UCSC Genome Browser database: 2019 update.

    Published in:
    Nucleic Acids Research, 2019, v. 47, n. D1, p. D853, doi. 10.1093/nar/gky1095
    By:
    • Haeussler, Maximilian;
    • Zweig, Ann S;
    • Tyner, Cath;
    • Speir, Matthew L;
    • Rosenbloom, Kate R;
    • Raney, Brian J;
    • Lee, Christopher M;
    • Lee, Brian T;
    • Hinrichs, Angie S;
    • Gonzalez, Jairo Navarro;
    • Gibson, David;
    • Diekhans, Mark;
    • Clawson, Hiram;
    • Casper, Jonathan;
    • Barber, Galt P;
    • Haussler, David;
    • Kuhn, Robert M;
    • Kent, W James
    Publication type:
    Article

  • The UCSC Genome Browser database: 2017 update.

    Published in:
    Nucleic Acids Research, 2017, v. 45, n. D1, p. D626, doi. 10.1093/nar/gkw1134
    By:
    • Tyner, Cath;
    • Barber, Galt P.;
    • Casper, Jonathan;
    • Clawson, Hiram;
    • Diekhans, Mark;
    • Eisenhart, Christopher;
    • Fischer, Clayton M.;
    • Gibson, David;
    • Gonzalez, Jairo Navarro;
    • Guruvadoo, Luvina;
    • Haeussler, Maximilian;
    • Heitner, Steve;
    • Hinrichs, Angie S.;
    • Karolchik, Donna;
    • Lee, Brian T.;
    • Lee, Christopher M.;
    • Nejad, Parisa;
    • Raney, Brian J.;
    • Rosenbloom, Kate R.;
    • Speir, Matthew L.
    Publication type:
    Article

  • The UCSC Genome Browser database: 2016 update.

    Published in:
    Nucleic Acids Research, 2016, v. 44, n. 1, p. D717, doi. 10.1093/nar/gkv1275
    By:
    • Speir, Matthew L.;
    • Zweig, Ann S.;
    • Rosenbloom, Kate R.;
    • Raney, Brian J.;
    • Paten, Benedict;
    • Nejad, Parisa;
    • Lee, Brian T.;
    • Learned, Katrina;
    • Karolchik, Donna;
    • Hinrichs, Angie S.;
    • Heitner, Steve;
    • Harte, Rachel A.;
    • Haeussler, Maximilian;
    • Guruvadoo, Luvina;
    • Fujita, Pauline A.;
    • Eisenhart, Christopher;
    • Diekhans, Mark;
    • Clawson, Hiram;
    • Casper, Jonathan;
    • Barber, Galt P.
    Publication type:
    Article

  • The UCSC Genome Browser database: 2015 update.

    Published in:
    Nucleic Acids Research, 2015, v. 43, n. D1, p. D670, doi. 10.1093/nar/gku1177
    By:
    • Rosenbloom, Kate R.;
    • Armstrong, Joel;
    • Barber, Galt P.;
    • Casper, Jonathan;
    • Clawson, Hiram;
    • Diekhans, Mark;
    • Dreszer, Timothy R.;
    • Fujita, Pauline A.;
    • Guruvadoo, Luvina;
    • Haeussler, Maximilian;
    • Harte, Rachel A.;
    • Heitner, Steve;
    • Hickey, Glenn;
    • Hinrichs, Angie S.;
    • Hubley, Robert;
    • Karolchik, Donna;
    • Learned, Katrina;
    • Lee, Brian T.;
    • Li, Chin H.;
    • Miga, Karen H.
    Publication type:
    Article

  • The UCSC Genome Browser database: 2014 update.

    Published in:
    Nucleic Acids Research, 2014, v. 42, n. D1, p. D764, doi. 10.1093/nar/gkt1168
    By:
    • Karolchik, Donna;
    • Barber, Galt P.;
    • Casper, Jonathan;
    • Clawson, Hiram;
    • Cline, Melissa S.;
    • Diekhans, Mark;
    • Dreszer, Timothy R.;
    • Fujita, Pauline A.;
    • Guruvadoo, Luvina;
    • Haeussler, Maximilian;
    • Harte, Rachel A.;
    • Heitner, Steve;
    • Hinrichs, Angie S.;
    • Learned, Katrina;
    • Lee, Brian T.;
    • Li, Chin H.;
    • Raney, Brian J.;
    • Rhead, Brooke;
    • Rosenbloom, Kate R.;
    • Sloan, Cricket A.
    Publication type:
    Article

  • ENCODE whole-genome data in the UCSC Genome Browser: update 2012.

    Published in:
    Nucleic Acids Research, 2012, p. D912, doi. 10.1093/nar/gkr1012
    By:
    • Rosenbloom, Kate R.;
    • Dreszer, Timothy R.;
    • Long, Jeffrey C.;
    • Malladi, Venkat S.;
    • Sloan, Cricket A.;
    • Raney, Brian J.;
    • Cline, Melissa S.;
    • Karolchik, Donna;
    • Barber, Galt P.;
    • Clawson, Hiram;
    • Diekhans, Mark;
    • Fujita, Pauline A.;
    • Goldman, Mary;
    • Gravell, Robert C.;
    • Harte, Rachel A.;
    • Hinrichs, Angie S.;
    • Kirkup, Vanessa M.;
    • Kuhn, Robert M.;
    • Learned, Katrina;
    • Maddren, Morgan
    Publication type:
    Article

  • The UCSC Genome Browser database: update 2011.

    Published in:
    Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D876, doi. 10.1093/nar/gkq963
    By:
    • Fujita, Pauline A.;
    • Rhead, Brooke;
    • Zweig, Ann S.;
    • Hinrichs, Angie S.;
    • Karolchik, Donna;
    • Cline, Melissa S.;
    • Goldman, Mary;
    • Barber, Galt P.;
    • Clawson, Hiram;
    • Coelho, Antonio;
    • Diekhans, Mark;
    • Dreszer, Timothy R.;
    • Giardine, Belinda M.;
    • Harte, Rachel A.;
    • Hillman-Jackson, Jennifer;
    • Hsu, Fan;
    • Kirkup, Vanessa;
    • Kuhn, Robert M.;
    • Learned, Katrina;
    • Li, Chin H.
    Publication type:
    Article

  • ENCODE whole-genome data in the UCSC genome browser (2011 update).

    Published in:
    Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D871, doi. 10.1093/nar/gkq1017
    By:
    • Raney, Brian J.;
    • Cline, Melissa S.;
    • Rosenbloom, Kate R.;
    • Dreszer, Timothy R.;
    • Learned, Katrina;
    • Barber, Galt P.;
    • Meyer, Laurence R.;
    • Sloan, Cricket A.;
    • Malladi, Venkat S.;
    • Roskin, Krishna M.;
    • Suh, Bernard B.;
    • Hinrichs, Angie S.;
    • Clawson, Hiram;
    • Zweig, Ann S.;
    • Kirkup, Vanessa;
    • Fujita, Pauline A.;
    • Rhead, Brooke;
    • Smith, Kayla E.;
    • Pohl, Andy;
    • Kuhn, Robert M.
    Publication type:
    Article

  • The UCSC Genome Browser database: update 2010.

    Published in:
    Nucleic Acids Research, 2010, v. 38, p. D613, doi. 10.1093/nar/gkp939
    By:
    • Rhead, Brooke;
    • Karolchik, Donna;
    • Kuhn, Robert M.;
    • Hinrichs, Angie S.;
    • Zweig, Ann S.;
    • Fujita, Pauline A.;
    • Diekhans, Mark;
    • Smith, Kayla E.;
    • Rosenbloom, Kate R.;
    • Raney, Brian J.;
    • Pohl, Andy;
    • Pheasant, Michael;
    • Meyer, Laurence R.;
    • Learned, Katrina;
    • Fan Hsu;
    • Hillman-Jackson, Jennifer;
    • Harte, Rachel A.;
    • Giardine, Belinda;
    • Dreszer, Timothy R.;
    • Clawson, Hiram
    Publication type:
    Article

  • The ENCODE Project at UC Santa Cruz.

    Published in:
    Nucleic Acids Research, 2007, v. 35, p. d663
    By:
    • Thomas, Daryl J.;
    • Rosenbloom, Kate R.;
    • Clawson, Hiram;
    • Hinrichs, Angie S.;
    • Trumbower, Heather;
    • Raney, Brian J.;
    • Karolchik, Donna;
    • Barber, Galt P.;
    • Harte, Rachel A.;
    • Hillman-Jackson, Jennifer;
    • Kuhn, Robert M.;
    • Rhead, Brooke L.;
    • Smith, Kayla E.;
    • Thakkapallayil, Archana;
    • Zweig, Ann S.
    Publication type:
    Article

  • Exploring Massive Incomplete Lineage Sorting in Arctoids (Laurasiatheria, Carnivora).

    Published in:
    Molecular Biology & Evolution, 2015, v. 32, n. 12, p. 3194, doi. 10.1093/molbev/msv188
    By:
    • Doronina, Liliya;
    • Churakov, Gennady;
    • Jingjing Shi;
    • Brosius, Jürgen;
    • Baertsch, Robert;
    • Clawson, Hiram;
    • Schmitz, Jürgen
    Publication type:
    Article

  • The UCSC Ebola Genome Portal.

    Published in:
    PLoS Currents, 2014, p. 1, doi. 10.1371/currents.outbreaks.386ab0964ab4d6c8cb550bfb6071d822
    By:
    • Haeussler, Maximilian;
    • Karolchik, Donna;
    • Clawson, Hiram;
    • Raney, Brian J.;
    • Rosenbloom, Kate R.;
    • Fujita, Pauline A.;
    • Hinrichs, Angie S.;
    • Speir, Matthew L.;
    • Eisenhart, Chris;
    • Zweig, Ann S.;
    • Haussler, David;
    • Kent, W. James
    Publication type:
    Article

  • The UCSC repeat browser allows discovery and visualization of evolutionary conflict across repeat families.

    Published in:
    Mobile DNA, 2020, v. 11, n. 1, p. 1, doi. 10.1186/s13100-020-00208-w
    By:
    • Fernandes, Jason D.;
    • Zamudio-Hurtado, Armando;
    • Clawson, Hiram;
    • Kent, W. James;
    • Haussler, David;
    • Salama, Sofie R.;
    • Haeussler, Maximilian
    Publication type:
    Article

  • Intronic Alternative Splicing Regulators Identified by Comparative Genomics in Nematodes.

    Published in:
    PLoS Computational Biology, 2006, v. 2, n. 7, p. e86, doi. 10.1371/journal.pcbi.0020086
    By:
    • Kabat, Jennifer L.;
    • Barberan-Soler, Sergio;
    • McKenna, Paul;
    • Clawson, Hiram;
    • Farrer, Tracy;
    • Zahler, Alan M.
    Publication type:
    Article

  • Genome sequence of the basal haplorrhine primate Tarsius syrichta reveals unusual insertions.

    Published in:
    Nature Communications, 2016, v. 7, n. 10, p. 12997, doi. 10.1038/ncomms12997
    By:
    • Schmitz, Jürgen;
    • Noll, Angela;
    • Raabe, Carsten A.;
    • Churakov, Gennady;
    • Voss, Reinhard;
    • Kiefmann, Martin;
    • Rozhdestvensky, Timofey;
    • Brosius, Jürgen;
    • Baertsch, Robert;
    • Clawson, Hiram;
    • Roos, Christian;
    • Zimin, Aleksey;
    • Minx, Patrick;
    • Montague, Michael J.;
    • Wilson, Richard K.;
    • Warren, Wesley C.
    Publication type:
    Article

  • GenArk: towards a million UCSC genome browsers.

    Published in:
    Genome Biology, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s13059-023-03057-x
    By:
    • Clawson, Hiram;
    • Lee, Brian T.;
    • Raney, Brian J.;
    • Barber, Galt P.;
    • Casper, Jonathan;
    • Diekhans, Mark;
    • Fischer, Clay;
    • Gonzalez, Jairo Navarro;
    • Hinrichs, Angie S.;
    • Lee, Christopher M.;
    • Nassar, Luis R.;
    • Perez, Gerardo;
    • Wick, Brittney;
    • Schmelter, Daniel;
    • Speir, Matthew L.;
    • Armstrong, Joel;
    • Zweig, Ann S.;
    • Kuhn, Robert M.;
    • Kirilenko, Bogdan M.;
    • Hiller, Michael
    Publication type:
    Article

  • True Homoplasy of Retrotransposon Insertions in Primates.

    Published in:
    Systematic Biology, 2019, v. 68, n. 3, p. 482, doi. 10.1093/sysbio/syy076
    By:
    • Doronina, Liliya;
    • Reising, Olga;
    • Clawson, Hiram;
    • Ray, David A;
    • Schmitz, Jürgen
    Publication type:
    Article

  • A high-resolution map of human evolutionary constraint using 29 mammals.

    Published in:
    Nature, 2011, v. 478, n. 7370, p. 476, doi. 10.1038/nature10530
    By:
    • Lindblad-Toh, Kerstin;
    • Garber, Manuel;
    • Zuk, Or;
    • Lin, Michael F.;
    • Parker, Brian J.;
    • Washietl, Stefan;
    • Kheradpour, Pouya;
    • Ernst, Jason;
    • Jordan, Gregory;
    • Mauceli, Evan;
    • Ward, Lucas D.;
    • Lowe, Craig B.;
    • Holloway, Alisha K.;
    • Clamp, Michele;
    • Gnerre, Sante;
    • Alföldi, Jessica;
    • Beal, Kathryn;
    • Chang, Jean;
    • Clawson, Hiram;
    • Cuff, James
    Publication type:
    Article

  • The UCSC Known Genes.

    Published in:
    Bioinformatics, 2006, v. 22, n. 9, p. 1036, doi. 10.1093/bioinformatics/btl048
    By:
    • Fan Hsu;
    • W. James Kent;
    • Hiram Clawson;
    • Robert M. Kuhn;
    • Mark Diekhans;
    • David Haussler
    Publication type:
    Article

  • The UCSC Genome Browser database: 2024 update.

    Published in:
    Nucleic Acids Research, 2024, v. 52, n. D1, p. D1082, doi. 10.1093/nar/gkad987
    By:
    • Raney, Brian J;
    • Barber, Galt P;
    • Benet-Pagès, Anna;
    • Casper, Jonathan;
    • Clawson, Hiram;
    • Cline, Melissa S;
    • Diekhans, Mark;
    • Fischer, Clayton;
    • Navarro Gonzalez, Jairo;
    • Hickey, Glenn;
    • Hinrichs, Angie S;
    • Kuhn, Robert M;
    • Lee, Brian T;
    • Lee, Christopher M;
    • Le Mercier, Phillipe;
    • Miga, Karen H;
    • Nassar, Luis R;
    • Nejad, Parisa;
    • Paten, Benedict;
    • Perez, Gerardo
    Publication type:
    Article

  • UCSC Genome Browser database: 2023 update.

    Published in:
    Nucleic Acids Research, 2023, v. 51, n. D1, p. D1188, doi. 10.1093/nar/gkac1072
    By:
    • Nassar, Luis R;
    • Barber, Galt P;
    • Benet-Pagès, Anna;
    • Casper, Jonathan;
    • Clawson, Hiram;
    • Diekhans, Mark;
    • Fischer, Clay;
    • Gonzalez, Jairo Navarro;
    • Hinrichs, Angie S;
    • Lee, Brian T;
    • Lee, Christopher M;
    • Muthuraman, Pranav;
    • Nguy, Beagan;
    • Pereira, Tiana;
    • Nejad, Parisa;
    • Perez, Gerardo;
    • Raney, Brian J;
    • Schmelter, Daniel;
    • Speir, Matthew L;
    • Wick, Brittney D
    Publication type:
    Article

  • UCSC Genome Browser database: 2022 update.

    Published in:
    Nucleic Acids Research, 2022, v. 50, n. D1, p. D1115, doi. 10.1093/nar/gkab959
    By:
    • Lee, Brian T;
    • Barber, Galt P;
    • Benet-Pagès, Anna;
    • Casper, Jonathan;
    • Clawson, Hiram;
    • Diekhans, Mark;
    • Fischer, Clay;
    • Gonzalez, Jairo Navarro;
    • Hinrichs, Angie S;
    • Lee, Christopher M;
    • Muthuraman, Pranav;
    • Nassar, Luis R;
    • Nguy, Beagan;
    • Pereira, Tiana;
    • Perez, Gerardo;
    • Raney, Brian J;
    • Rosenbloom, Kate R;
    • Schmelter, Daniel;
    • Speir, Matthew L;
    • Wick, Brittney D
    Publication type:
    Article

  • UCSC Genome Browser enters 20th year.

    Published in:
    Nucleic Acids Research, 2020, v. 48, n. D1, p. D756, doi. 10.1093/nar/gkz1012
    By:
    • Lee, Christopher M;
    • Barber, Galt P;
    • Casper, Jonathan;
    • Clawson, Hiram;
    • Diekhans, Mark;
    • Gonzalez, Jairo Navarro;
    • Hinrichs, Angie S;
    • Lee, Brian T;
    • Nassar, Luis R;
    • Powell, Conner C;
    • Raney, Brian J;
    • Rosenbloom, Kate R;
    • Schmelter, Daniel;
    • Speir, Matthew L;
    • Zweig, Ann S;
    • Haussler, David;
    • Haeussler, Maximilian;
    • Kuhn, Robert M;
    • Kent, W James
    Publication type:
    Article

  • Variant interpretation: UCSC Genome Browser Recommended Track Sets.

    Published in:
    Human Mutation, 2022, v. 43, n. 8, p. 998, doi. 10.1002/humu.24335
    By:
    • Benet‐Pagès, Anna;
    • Rosenbloom, Kate R.;
    • Nassar, Luis R.;
    • Lee, Christopher M.;
    • Raney, Brian J.;
    • Clawson, Hiram;
    • Schmelter, Daniel;
    • Casper, Jonathan;
    • Gonzalez, Jairo Navarro;
    • Perez, Gerardo;
    • Lee, Brian T.;
    • Zweig, Ann S.;
    • Kent, W. James;
    • Haeussler, Maximillian;
    • Kuhn, Robert M.
    Publication type:
    Article

  • Euarchontoglires Challenged by Incomplete Lineage Sorting.

    Published in:
    Genes, 2022, v. 13, n. 5, p. 774, doi. 10.3390/genes13050774
    By:
    • Doronina, Liliya;
    • Reising, Olga;
    • Clawson, Hiram;
    • Churakov, Gennady;
    • Schmitz, Jürgen
    Publication type:
    Article

  • Navigating protected genomics data with UCSC Genome Browser in a Box.

    Published in:
    Bioinformatics, 2015, v. 31, n. 5, p. 764, doi. 10.1093/bioinformatics/btu712
    By:
    • Haeussler, Maximilian;
    • Raney, Brian J.;
    • Hinrichs, Angie S.;
    • Clawson, Hiram;
    • Zweig, Ann S.;
    • Karolchik, Donna;
    • Casper, Jonathan;
    • Speir, Matthew L.;
    • Haussler, David;
    • Kent, W. James
    Publication type:
    Article

  • Comparative assembly hubs: Web-accessible browsers for comparative genomics.

    Published in:
    Bioinformatics, 2014, v. 30, n. 23, p. 3293, doi. 10.1093/bioinformatics/btu534
    By:
    • Nguyen, Ngan;
    • Hickey, Glenn;
    • Raney, Brian J.;
    • Armstrong, Joel;
    • Clawson, Hiram;
    • Zweig, Ann;
    • Karolchik, Donna;
    • Kent, William James;
    • Haussler, David;
    • Paten, Benedict
    Publication type:
    Article

  • Track data hubs enable visualization of user-defined genome-wide annotations on the UCSC Genome Browser.

    Published in:
    Bioinformatics, 2014, v. 30, n. 7, p. 1003, doi. 10.1093/bioinformatics/btt637
    By:
    • Raney, Brian J.;
    • Dreszer, Timothy R.;
    • Barber, Galt P.;
    • Clawson, Hiram;
    • Fujita, Pauline A.;
    • Wang, Ting;
    • Nguyen, Ngan;
    • Paten, Benedict;
    • Zweig, Ann S.;
    • Karolchik, Donna;
    • Kent, W. James
    Publication type:
    Article