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Splicing factor SRSF1 deficiency in the liver triggers NASH-like pathology and cell death.
Published in:
Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-35932-3
By:
- Arif, Waqar;
- Mathur, Bhoomika;
- Saikali, Michael F.;
- Chembazhi, Ullas V.;
- Toohill, Katelyn;
- Song, You Jin;
- Hao, Qinyu;
- Karimi, Saman;
- Blue, Steven M.;
- Yee, Brian A.;
- Van Nostrand, Eric L.;
- Bangru, Sushant;
- Guzman, Grace;
- Yeo, Gene W.;
- Prasanth, Kannanganattu V.;
- Anakk, Sayeepriyadarshini;
- Cummins, Carolyn L.;
- Kalsotra, Auinash
Publication type:
Article
Nol12 is a multifunctional RNA binding protein at the nexus of RNA and DNA metabolism.
Published in:
Nucleic Acids Research, 2017, v. 45, n. 21, p. 12509, doi. 10.1093/nar/gkx963
By:
- Scott, Daniel D.;
- Trahan, Christian;
- Zindy, Pierre J.;
- Aguilar, Lisbeth C.;
- Delubac, Marc Y.;
- Van Nostrand, Eric L.;
- Adivarahan, Srivathsan;
- Wei, Karen E.;
- Yeo, Gene W.;
- Zenklusen, Daniel;
- Oeffinger, Marlene
Publication type:
Article
Allele-specific binding of RNA-binding proteins reveals functional genetic variants in the RNA.
Published in:
Nature Communications, 2019, v. 10, n. 1, p. 1, doi. 10.1038/s41467-019-09292-w
By:
- Yang, Ei-Wen;
- Bahn, Jae Hoon;
- Hsiao, Esther Yun-Hua;
- Tan, Boon Xin;
- Sun, Yiwei;
- Fu, Ting;
- Zhou, Bo;
- Van Nostrand, Eric L.;
- Pratt, Gabriel A.;
- Freese, Peter;
- Wei, Xintao;
- Quinones-Valdez, Giovanni;
- Urban, Alexander E.;
- Graveley, Brenton R.;
- Burge, Christopher B.;
- Yeo, Gene W.;
- Xiao, Xinshu
Publication type:
Article
A protein-RNA interaction atlas of the ribosome biogenesis factor AATF.
Published in:
Scientific Reports, 2019, v. 9, n. 1, p. N.PAG, doi. 10.1038/s41598-019-47552-3
By:
- Kaiser, Rainer W. J.;
- Ignarski, Michael;
- Van Nostrand, Eric L.;
- Frese, Christian K.;
- Jain, Manaswita;
- Cukoski, Sadrija;
- Heinen, Heide;
- Schaechter, Melanie;
- Seufert, Lisa;
- Bunte, Konstantin;
- Frommolt, Peter;
- Keller, Patrick;
- Helm, Mark;
- Bohl, Katrin;
- Höhne, Martin;
- Schermer, Bernhard;
- Benzing, Thomas;
- Höpker, Katja;
- Dieterich, Christoph;
- Yeo, Gene W.
Publication type:
Article
Regulation of RNA editing by RNA-binding proteins in human cells.
Published in:
Communications Biology, 2019, v. 2, n. 1, p. N.PAG, doi. 10.1038/s42003-018-0271-8
By:
- Quinones-Valdez, Giovanni;
- Tran, Stephen S.;
- Jun, Hyun-Ik;
- Bahn, Jae Hoon;
- Yang, Ei-Wen;
- Zhan, Lijun;
- Brümmer, Anneke;
- Wei, Xintao;
- Van Nostrand, Eric L.;
- Pratt, Gabriel A.;
- Yeo, Gene W.;
- Graveley, Brenton R.;
- Xiao, Xinshu
Publication type:
Article
Open Problems in Extracellular RNA Data Analysis: Insights From an ERCC Online Workshop.
Published in:
Frontiers in Genetics, 2022, v. 12, p. 1, doi. 10.3389/fgene.2021.778416
By:
- Alexander, Roger P.;
- Kitchen, Robert R;
- Tosar, Juan Pablo;
- Roth, Matthew;
- Mestdagh, Pieter;
- Max, Klaas E. A.;
- Rozowsky, Joel;
- Kaczor-Urbanowicz, Karolina Elżbieta;
- Chang, Justin;
- Balaj, Leonora;
- Losic, Bojan;
- Van Nostrand, Eric L.;
- LaPlante, Emily;
- Mateescu, Bogdan;
- White, Brian S.;
- Yu, Rongshan;
- Milosavljevic, Aleksander;
- Stolovitzky, Gustavo;
- Spengler, Ryan M.
Publication type:
Article
RBP Image Database: A resource for the systematic characterization of the subcellular distribution properties of human RNA binding proteins.
Published in:
Nucleic Acids Research, 2023, v. 51, n. D1, p. D1549, doi. 10.1093/nar/gkac971
By:
- Benoit Bouvrette, Louis Philip;
- Wang, Xiaofeng;
- Boulais, Jonathan;
- Kong, Jian;
- Syed, Easin Uddin;
- Blue, Steven M;
- Zhan, Lijun;
- Olson, Sara;
- Stanton, Rebecca;
- Wei, Xintao;
- Yee, Brian;
- Van Nostrand, Eric L;
- Fu, Xiang-Dong;
- Burge, Christopher B;
- Graveley, Brenton R;
- Yeo, Gene W;
- Lécuyer, Eric
Publication type:
Article
Roles of the Developmental Regulator unc-62/Homothorax in Limiting Longevity in Caenorhabditis elegans.
Published in:
PLoS Genetics, 2013, v. 9, n. 1, p. 1, doi. 10.1371/journal.pgen.1003325
By:
- Van Nostrand, Eric L.;
- Sánchez-Blanco, Adolfo;
- Beijing Wu;
- Nguyen, Andy;
- Kim, Stuart K.
Publication type:
Article
Discovery and Analysis of Evolutionarily Conserved Intronic Splicing Regulatory Elements.
Published in:
PLoS Genetics, 2007, v. 3, n. 5, p. e85, doi. 10.1371/journal.pgen.0030085
By:
- Yeo, Gene W.;
- Nostrand, Eric L. Van;
- Liang, Tiffany Y.
Publication type:
Article
Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins.
Published in:
Genome Biology, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s13059-020-01982-9
By:
- Van Nostrand, Eric L.;
- Pratt, Gabriel A.;
- Yee, Brian A.;
- Wheeler, Emily C.;
- Blue, Steven M.;
- Mueller, Jasmine;
- Park, Samuel S.;
- Garcia, Keri E.;
- Gelboin-Burkhart, Chelsea;
- Nguyen, Thai B.;
- Rabano, Ines;
- Stanton, Rebecca;
- Sundararaman, Balaji;
- Wang, Ruth;
- Fu, Xiang-Dong;
- Graveley, Brenton R.;
- Yeo, Gene W.
Publication type:
Article
Transcriptome-wide identification of RNA-binding protein binding sites using seCLIP-seq.
Published in:
Nature Protocols, 2022, v. 17, n. 5, p. 1223, doi. 10.1038/s41596-022-00680-z
By:
- Blue, Steven M.;
- Yee, Brian A.;
- Pratt, Gabriel A.;
- Mueller, Jasmine R.;
- Park, Samuel S.;
- Shishkin, Alexander A.;
- Starner, Anne C.;
- Van Nostrand, Eric L.;
- Yeo, Gene W.
Publication type:
Article
Advances and challenges in the detection of transcriptome-wide protein- RNA interactions.
Published in:
Wiley Interdisciplinary Reviews: RNA, 2018, v. 9, n. 1, p. n/a, doi. 10.1002/wrna.1436
By:
- Wheeler, Emily C.;
- Van Nostrand, Eric L.;
- Yeo, Gene W.
Publication type:
Article
Advances and challenges in the detection of transcriptome-wide protein-RNA interactions.
Published in:
Wiley Interdisciplinary Reviews: RNA, 2017, p. 1, doi. 10.1002/wrna.1436
By:
- Wheeler, Emily C.;
- Van Nostrand, Eric L.;
- Yeo, Gene W.
Publication type:
Article
Deactivation of the GATA Transcription Factor ELT-2 Is a Major Driver of Normal Aging in C. elegans.
Published in:
PLoS Genetics, 2016, v. 12, n. 4, p. 1, doi. 10.1371/journal.pgen.1005956
By:
- Mann, Frederick G.;
- Van Nostrand, Eric L.;
- Friedland, Ari E.;
- Liu, Xiao;
- Kim, Stuart K.
Publication type:
Article
The Inflammatory Transcription Factors NFκB, STAT1 and STAT3 Drive Age-Associated Transcriptional Changes in the Human Kidney.
Published in:
PLoS Genetics, 2015, v. 11, n. 12, p. 1, doi. 10.1371/journal.pgen.1005734
By:
- O’Brown, Zach K.;
- Van Nostrand, Eric L.;
- Higgins, John P.;
- Kim, Stuart K.
Publication type:
Article

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