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Virus expression detection reveals RNA-sequencing contamination in TCGA.
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- BMC Genomics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12864-020-6483-6
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- Article
The histone methyltransferase SETD2 regulates HIV expression and latency.
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- PLoS Pathogens, 2024, v. 20, n. 6, p. 1, doi. 10.1371/journal.ppat.1012281
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- Article
The effects of soil phosphorus content on plant microbiota are driven by the plant phosphate starvation response.
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- PLoS Biology, 2019, v. 17, n. 11, p. 1, doi. 10.1371/journal.pbio.3000534
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- Article
A Locus in Drosophila sechellia Affecting Tolerance of a Host Plant Toxin.
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- Genetics, 2013, v. 195, n. 3, p. 1063, doi. 10.1534/genetics.113.154773
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- Article
Next-Generation Mapping of Complex Traits with Phenotype-Based Selection and Introgression.
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- Genetics, 2011, v. 189, n. 4, p. 1203, doi. 10.1534/genetics.111.129445
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- Article
Overcoming Redundancy: An RNAi Enhancer Screen for Morphogenesis Genes in Caenorhabditis elegans.
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- Genetics, 2011, v. 188, n. 3, p. 549, doi. 10.1534/genetics.111.129486
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- Article
Genetic Changes Accompanying the Evolution of Host Specialization in Drosophila sechellia.
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- Genetics, 2009, v. 181, n. 2, p. 721, doi. 10.1534/genetics.108.093419
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- Article
Patterns of Amino Acid Evolution in the Drosophila ananassae Chimeric Gene, siren, Parallel Those of Other Adh-Derived Chimeras.
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- Genetics, 2008, v. 180, n. 2, p. 1261, doi. 10.1534/genetics.108.090068
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- Article
Evidence for de Novo Evolution of Testis-Expressed Genes in the Drosophila yakuba/Drosophila erecta Clade.
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- Genetics, 2007, v. 176, n. 2, p. 1131, doi. 10.1534/genetics.106.069245
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- Article
Origin and Evolution of a Chimeric Fusion Gene in Drosophila subobscura, D. madeirensis and D. guanche.
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- Genetics, 2005, v. 170, n. 1, p. 207, doi. 10.1534/genetics.104.037283
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- Article
Molecular Population Genetics of Male Accessory Gland Proteins in the Drosophila simulans Complex.
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- Genetics, 2004, v. 167, n. 2, p. 725, doi. 10.1534/genetics.103.020883
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- Article
Genomic effects of nucleotide substitutions in Drosophila simulans.
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- Genetics, 2002, v. 162, n. 4, p. 1753, doi. 10.1093/genetics/162.4.1753
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- Article
Detecting the Undetected: Estimating the Total Number of Loci Underlying a Quantitative Trait.
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- Genetics, 2000, v. 156, n. 4, p. 2093, doi. 10.1093/genetics/156.4.2093
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- Article
The genetic basis of Drosophila sechellia's resistance to a host plant toxin.
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- Genetics, 1998, v. 149, n. 4, p. 1899, doi. 10.1093/genetics/149.4.1899
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- Article
Selective single cell isolation for genomics using microraft arrays.
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- Nucleic Acids Research, 2016, v. 44, n. 17, p. 8292, doi. 10.1093/nar/gkw700
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- Article
DiffSplice: the genome-wide detection of differential splicing events with RNA-seq.
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- Nucleic Acids Research, 2013, v. 41, n. 2, p. e39, doi. 10.1093/nar/gks1026
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- Article
Practical innovations for high-throughput amplicon sequencing.
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- Nature Methods, 2013, v. 10, n. 10, p. 999, doi. 10.1038/nmeth.2634
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- Article
Combinations of DIPs and Dprs control organization of olfactory receptor neuron terminals in Drosophila.
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- PLoS Genetics, 2018, v. 14, n. 8, p. 1, doi. 10.1371/journal.pgen.1007560
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- Article
Design of synthetic bacterial communities for predictable plant phenotypes.
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- PLoS Biology, 2018, v. 16, n. 2, p. 1, doi. 10.1371/journal.pbio.2003962
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- Article
Transcriptional profiling of olfactory system development identifies distal antenna as a regulator of subset of neuronal fates.
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- Scientific Reports, 2017, p. 40873, doi. 10.1038/srep40873
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- Article
Variation in hybrid gene expression: Implications for the evolution of genetic incompatibilities in interbreeding species.
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- Molecular Ecology, 2019, v. 28, n. 20, p. 4667, doi. 10.1111/mec.15246
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- Article
Comparative Genomics of Multiple Strains of <i>Pseudomonas cannabina</i> pv. <i>alisalensis</i>, a Potential Model Pathogen of Both Monocots and Dicots.
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- PLoS ONE, 2013, v. 8, n. 3, p. 1, doi. 10.1371/journal.pone.0059366
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- Article
Phylogeny of Toll-Like Receptor Signaling: Adapting the Innate Response.
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- PLoS ONE, 2013, v. 8, n. 1, p. 1, doi. 10.1371/journal.pone.0054156
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- Article
Oral SARS-CoV-2 host responses predict the early COVID-19 disease course.
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- Scientific Reports, 2024, v. 14, n. 1, p. 1, doi. 10.1038/s41598-024-67504-w
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- Article
Challenges and solutions for analysing dual RNA‐seq data for non‐model host–pathogen systems.
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- Methods in Ecology & Evolution, 2019, v. 10, n. 3, p. 401, doi. 10.1111/2041-210X.13135
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- Article
Genome Reference and Sequence Variation in the Large Repetitive Central Exon of Human MUC5AC.
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- American Journal of Respiratory Cell & Molecular Biology, 2014, v. 50, n. 1, p. 223, doi. 10.1165/rcmb.2013-0235OC
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- Article
MT-Toolbox: improved amplicon sequencing using molecule tags.
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- BMC Bioinformatics, 2014, v. 15, n. 1, p. 1, doi. 10.1186/1471-2105-15-284
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- Article
CIB1 depletion impairs cell survival and tumor growth in triple-negative breast cancer.
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- Breast Cancer Research & Treatment, 2015, v. 152, n. 2, p. 337, doi. 10.1007/s10549-015-3458-4
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- Article
Untangling the Effects of Plant Genotype and Soil Conditions on the Assembly of Bacterial and Fungal Communities in the Rhizosphere of the Wild Andean Blueberry (Vaccinium floribundum Kunth).
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- Microorganisms, 2023, v. 11, n. 2, p. 399, doi. 10.3390/microorganisms11020399
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- Article
Highly contiguous genome assembly of Drosophila prolongata—a model for evolution of sexual dimorphism and male-specific innovations.
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- G3: Genes | Genomes | Genetics, 2024, v. 14, n. 10, p. 1, doi. 10.1093/g3journal/jkae155
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- Article
Social experience and pheromone receptor activity reprogram gene expression in sensory neurons.
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- G3: Genes | Genomes | Genetics, 2023, v. 13, n. 6, p. 1, doi. 10.1093/g3journal/jkad072
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- Article
Empirical Evidence That Complexity Limits Horizontal Gene Transfer.
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- Genome Biology & Evolution, 2023, v. 15, n. 6, p. 1, doi. 10.1093/gbe/evad089
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- Article
Genetic testing reveals some mislabeling but general compliance with a ban on herbivorous fish harvesting in Belize.
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- Conservation Letters, 2013, v. 6, n. 2, p. 132, doi. 10.1111/j.1755-263X.2012.00286.x
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- Article
Evolution of a Signaling Nexus Constrained by Protein Interfaces and Conformational States.
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- PLoS Computational Biology, 2010, v. 6, n. 10, p. 1, doi. 10.1371/journal.pcbi.1000962
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- Article
The P seudomonas viridiflava phylogroups in the P . syringae species complex are characterized by genetic variability and phenotypic plasticity of pathogenicity-related traits.
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- Environmental Microbiology, 2014, v. 16, n. 7, p. 2301, doi. 10.1111/1462-2920.12433
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A scalable and memory-efficient algorithm for de novo transcriptome assembly of non-model organisms.
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- BMC Genomics, 2017, v. 18, p. 35, doi. 10.1186/s12864-017-3735-1
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- Article
Variable Suites of Non-effector Genes Are Co-regulated in the Type III Secretion Virulence Regulon across the <i>Pseudomonas syringae</i> Phylogeny.
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- PLoS Pathogens, 2014, v. 10, n. 1, p. 1, doi. 10.1371/journal.ppat.1003807
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Dynamic Evolution of Pathogenicity Revealed by Sequencing and Comparative Genomics of 19 Pseudomonas syringae Isolates.
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- PLoS Pathogens, 2011, v. 7, n. 7, p. 1, doi. 10.1371/journal.ppat.1002132
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- Article
Evolution of Gene Expression in the Drosophila Olfactory System.
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- Molecular Biology & Evolution, 2008, v. 25, n. 6, p. 1081, doi. 10.1093/molbev/msn055
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- Article
Influence of Grafting on Rootstock Rhizosphere Microbiome Assembly in Rosa sp. 'Natal Brier'.
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- Biology (2079-7737), 2023, v. 12, n. 5, p. 663, doi. 10.3390/biology12050663
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- Article
Population Genomics: Whole-Genome Analysis of Polymorphism and Divergence in Drosophila simulans.
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- PLoS Biology, 2007, v. 5, n. 11, p. e310, doi. 10.1371/journal.pbio.0050310
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- Article
Extending assembly of short DNA sequences to handle error.
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- Bioinformatics, 2007, v. 23, n. 21, p. 2942, doi. 10.1093/bioinformatics/btm451
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- Article
Rapid and Predictable Evolution of Admixed Populations Between Two Drosophila Species Pairs.
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- Genetics, 2020, v. 214, n. 1, p. 211, doi. 10.1534/genetics.119.302685
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Parallel Geographic Variation in Drosophila melanogaster.
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- Genetics, 2014, v. 197, n. 1, p. 361, doi. 10.1534/genetics.114.161463
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- Article
Parasites, niche modification and the host microbiome: A field survey of multiple parasites.
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- Molecular Ecology, 2021, v. 30, n. 10, p. 2404, doi. 10.1111/mec.15892
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A prospective study of asymptomatic SARS-CoV-2 infection among individuals involved in academic research under limited operations during the COVID-19 pandemic.
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- PLoS ONE, 2022, v. 17, n. 4, p. 1, doi. 10.1371/journal.pone.0267353
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- Article
FMLRC: Hybrid long read error correction using an FM-index.
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- BMC Bioinformatics, 2018, v. 19, p. 1, doi. 10.1186/s12859-018-2051-3
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- Article
<i>De Novo</i> ORFs in Drosophila Are Important to Organismal Fitness and Evolved Rapidly from Previously Non-coding Sequences.
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- PLoS Genetics, 2013, v. 9, n. 10, p. 1, doi. 10.1371/journal.pgen.1003860
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- Article
Systematic Identification of Balanced Transposition Polymorphisms in Saccharomyces cerevisiae.
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- PLoS Genetics, 2009, v. 5, n. 6, p. 1, doi. 10.1371/journal.pgen.1000502
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- Article
Adaptive Gene Expression Divergence Inferred from Population Genomics.
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- PLoS Genetics, 2007, v. 3, n. 10, p. e187, doi. 10.1371/journal.pgen.0030187
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- Article