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Multi-omics signatures of the human early life exposome.
Published in:
Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-34422-2
By:
- Maitre, Léa;
- Bustamante, Mariona;
- Hernández-Ferrer, Carles;
- Thiel, Denise;
- Lau, Chung-Ho E.;
- Siskos, Alexandros P.;
- Vives-Usano, Marta;
- Ruiz-Arenas, Carlos;
- Pelegrí-Sisó, Dolors;
- Robinson, Oliver;
- Mason, Dan;
- Wright, John;
- Cadiou, Solène;
- Slama, Rémy;
- Heude, Barbara;
- Casas, Maribel;
- Sunyer, Jordi;
- Papadopoulou, Eleni Z.;
- Gutzkow, Kristine B.;
- Andrusaityte, Sandra
Publication type:
Article
MultiDataSet: an R package for encapsulating multiple data sets with application to omic data integration.
Published in:
BMC Bioinformatics, 2017, v. 18, p. 1, doi. 10.1186/s12859-016-1455-1
By:
- Hernandez-Ferrer, Carles;
- Ruiz-Arenas, Carlos;
- Beltran-Gomila, Alba;
- González, Juan R.
Publication type:
Article
In utero and childhood exposure to tobacco smoke and multi-layer molecular signatures in children.
Published in:
2020
By:
- Vives-Usano, Marta;
- Hernandez-Ferrer, Carles;
- Maitre, Léa;
- Ruiz-Arenas, Carlos;
- Andrusaityte, Sandra;
- Borràs, Eva;
- Carracedo, Ángel;
- Casas, Maribel;
- Chatzi, Leda;
- Coen, Muireann;
- Estivill, Xavier;
- González, Juan R.;
- Grazuleviciene, Regina;
- Gutzkow, Kristine B.;
- Keun, Hector C.;
- Lau, Chung-Ho E.;
- Cadiou, Solène;
- Lepeule, Johanna;
- Mason, Dan;
- Quintela, Inés
Publication type:
journal article
Identification of autosomal cis expression quantitative trait methylation (cis eQTMs) in children's blood.
Published in:
eLife, 2022, p. 1, doi. 10.7554/eLife.65310
By:
- Ruiz-Arenas, Carlos;
- Hernandez-Ferrer, Carles;
- Vives-Usano, Marta;
- Marí, Sergi;
- Quintela, Ines;
- Mason, Dan;
- Cadiou, Solène;
- Casas, Maribel;
- Andrusaityte, Sandra;
- Gutzkow, Kristine Bjerve;
- Vafeiadi, Marina;
- Wright, John;
- Lepeule, Johanna;
- Grazuleviciene, Regina;
- Chatzi, Leda;
- Carracedo, Ángel;
- Estivill, Xavier;
- Marti, Eulàlia;
- Escaramís, Geòrgia;
- Vrijheid, Martine
Publication type:
Article
Identification of autosomal cis expression quantitative trait methylation (cis eQTMs) in children's blood.
Published in:
eLife, 2022, p. 1, doi. 10.7554/eLife.65310
By:
- Ruiz-Arenas, Carlos;
- Hernandez-Ferrer, Carles;
- Usano, Marta Vives;
- Marí, Sergi;
- Quintela, Ines;
- Mason, Dan;
- Cadiou, Solène;
- Casas, Maribel;
- Andrusaityte, Sandra;
- Gutzkow, Kristine Bjerve;
- Vafeiadi, Marina;
- Wright, John;
- Lepeule, Johanna;
- Grazuleviciene, Regina;
- Chatzi, Leda;
- Carracedo, Ángel;
- Estivill, Xavier;
- Marti, Eulàlia;
- Escaramís, Geòrgia;
- Vrijheid, Martine
Publication type:
Article
affy2sv: an R package to pre-process Affymetrix CytoScan HD and 750K arrays for SNP, CNV, inversion and mosaicism calling.
Published in:
BMC Bioinformatics, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s12859-015-0608-y
By:
- Hernandez-Ferrer, Carles;
- Garcia, Ines Quintela;
- Danielski, Katharina;
- Carracedo, Ángel;
- Pérez-Jurado, Luis A.;
- González, Juan R.
Publication type:
Article
A systemic approach to identify signaling pathways activated during short-term exposure to traffic-related urban air pollution from human blood.
Published in:
Environmental Science & Pollution Research, 2018, v. 25, n. 29, p. 29572, doi. 10.1007/s11356-018-3009-8
By:
- Vargas, José Eduardo;
- Kubesch, Nadine;
- Hernandéz-Ferrer, Carles;
- Carrasco-Turigas, Glória;
- Bustamante, Mariona;
- Nieuwenhuijsen, Mark;
- González, Juan R.
Publication type:
Article
Correction to: A guide to writing systematic reviews of rare disease treatments to generate FAIRcompliant datasets: building a Treatabolome.
Published in:
2021
By:
- Atalaia, Antonio;
- Thompson, Rachel;
- Corvo, Alberto;
- Carmody, Leigh;
- Piscia, Davide;
- Matalonga, Leslie;
- Macaya, Alfons;
- Lochmuller, Angela;
- Fontaine, Bertrand;
- Zurek, Birte;
- Hernandez-Ferrer, Carles;
- Reinhard, Carola;
- Gómez-Andrés, David;
- Desaphy, Jean-François;
- Schon, Katherine;
- Lohmann, Katja;
- Jennings, Matthew J.;
- Synofzik, Matthis;
- Riess, Olaf;
- Yaou, Rabah Ben
Publication type:
corrected article
A guide to writing systematic reviews of rare disease treatments to generate FAIR-compliant datasets: building a Treatabolome.
Published in:
2020
By:
- Atalaia, Antonio;
- Thompson, Rachel;
- Corvo, Alberto;
- Carmody, Leigh;
- Piscia, Davide;
- Matalonga, Leslie;
- Macaya, Alfons;
- Lochmuller, Angela;
- Fontaine, Bertrand;
- Zurek, Birte;
- Hernandez-Ferrer, Carles;
- Rheinard, Carola;
- Gómez-Andrés, David;
- Desaphy, Jean-François;
- Schon, Katherine;
- Lohmann, Katja;
- Jennings, Matthew J.;
- Synofzik, Matthis;
- Riess, Olaf;
- Yaou, Rabah Ben
Publication type:
journal article
Variability of multi-omics profiles in a population-based child cohort.
Published in:
2021
By:
- Gallego-Paüls, Marta;
- Hernández-Ferrer, Carles;
- Bustamante, Mariona;
- Basagaña, Xavier;
- Barrera-Gómez, Jose;
- Lau, Chung-Ho E.;
- Siskos, Alexandros P.;
- Vives-Usano, Marta;
- Ruiz-Arenas, Carlos;
- Wright, John;
- Slama, Remy;
- Heude, Barbara;
- Casas, Maribel;
- Grazuleviciene, Regina;
- Chatzi, Leda;
- Borràs, Eva;
- Sabidó, Eduard;
- Carracedo, Ángel;
- Estivill, Xavier;
- Urquiza, Jose
Publication type:
journal article
The RD‐Connect Genome‐Phenome Analysis Platform: Accelerating diagnosis, research, and gene discovery for rare diseases.
Published in:
Human Mutation, 2022, v. 43, n. 6, p. 717, doi. 10.1002/humu.24353
By:
- Laurie, Steven;
- Piscia, Davide;
- Matalonga, Leslie;
- Corvó, Alberto;
- Fernández‐Callejo, Marcos;
- Garcia‐Linares, Carles;
- Hernandez‐Ferrer, Carles;
- Luengo, Cristina;
- Martínez, Inés;
- Papakonstantinou, Anastasios;
- Picó‐Amador, Daniel;
- Protasio, Joan;
- Thompson, Rachel;
- Tonda, Raul;
- Bayés, Mònica;
- Bullich, Gemma;
- Camps‐Puchadas, Jordi;
- Paramonov, Ida;
- Trotta, Jean‐Rémi;
- Alonso, Angel
Publication type:
Article
The Clinical Genome and Ancestry Report: An interactive web application for prioritizing clinically implicated variants from genome sequencing data with ancestry composition.
Published in:
Human Mutation, 2020, v. 41, n. 2, p. 387, doi. 10.1002/humu.23942
By:
- Lee, In‐Hee;
- Negron, Jose A.;
- Hernandez‐Ferrer, Carles;
- Alvarez, William Jefferson;
- Mandl, Kenneth D.;
- Kong, Sek Won
Publication type:
Article
Comparative analysis of whole-genome sequencing pipelines to minimize false negative findings.
Published in:
Scientific Reports, 2019, v. 9, n. 1, p. 1, doi. 10.1038/s41598-019-39108-2
By:
- Hwang, Kyu-Baek;
- Lee, In-Hee;
- Li, Honglan;
- Won, Dhong-Geon;
- Hernandez-Ferrer, Carles;
- Negron, Jose Alberto;
- Kong, Sek Won
Publication type:
Article
Association between the pregnancy exposome and fetal growth.
Published in:
2020
By:
- Agier, Lydiane;
- Basagaña, Xavier;
- Hernandez-Ferrer, Carles;
- Maitre, Léa;
- Uria, Ibon Tamayo;
- Urquiza, Jose;
- Andrusaityte, Sandra;
- Casas, Maribel;
- Castro, Montserrat de;
- Cequier, Enrique;
- Chatzi, Leda;
- Donaire-Gonzalez, David;
- Giorgis-Allemand, Lise;
- Gonzalez, Juan R;
- Grazuleviciene, Regina;
- Gützkow, Kristine B;
- Haug, Line S;
- Sakhi, Amrit K;
- McEachan, Rosemary R C;
- Meltzer, Helle M
Publication type:
journal article
Comprehensive study of the exposome and omic data using rexposome Bioconductor Packages.
Published in:
Bioinformatics, 2019, v. 35, n. 24, p. 5344, doi. 10.1093/bioinformatics/btz526
By:
- Hernandez-Ferrer, Carles;
- Wellenius, Gregory A;
- Tamayo, Ibon;
- Basagaña, Xavier;
- Sunyer, Jordi;
- Vrijheid, Martine;
- Gonzalez, Juan R
Publication type:
Article
CTDquerier: a bioconductor R package for Comparative Toxicogenomics DatabaseTM data extraction, visualization and enrichment of environmental and toxicological studies.
Published in:
Bioinformatics, 2018, v. 34, n. 18, p. 3235, doi. 10.1093/bioinformatics/bty326
By:
- Hernandez-Ferrer, Carles;
- Gonzalez, Juan R
Publication type:
Article
psygenet2r: a R/Bioconductor package for the analysis of psychiatric disease genes.
Published in:
Bioinformatics, 2017, v. 33, n. 24, p. 4004, doi. 10.1093/bioinformatics/btx506
By:
- Gutiérrez-Sacristán, Alba;
- Hernández-Ferrer, Carles;
- González, Juan R.;
- Furlong, Laura I.
Publication type:
Article
Circulating miRNAs, isomiRs and small RNA clusters in human plasma and breast milk.
Published in:
PLoS ONE, 2018, v. 13, n. 3, p. 1, doi. 10.1371/journal.pone.0193527
By:
- Rubio, Mercedes;
- Bustamante, Mariona;
- Hernandez-Ferrer, Carles;
- Fernandez-Orth, Dietmar;
- Pantano, Lorena;
- Sarria, Yaris;
- Piqué-Borras, Maria;
- Vellve, Kilian;
- Agramunt, Silvia;
- Carreras, Ramon;
- Estivill, Xavier;
- Gonzalez, Juan R.;
- Mayor, Alfredo
Publication type:
Article
WEScover: selection between clinical whole exome sequencing and gene panel testing.
Published in:
BMC Bioinformatics, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s12859-021-04178-5
By:
- Lee, In-Hee;
- Lin, Yufei;
- Alvarez, William Jefferson;
- Hernandez-Ferrer, Carles;
- Mandl, Kenneth D.;
- Kong, Sek Won
Publication type:
Article

Found: 19