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Evidence for the Association between the Intronic Haplotypes of Ionotropic Glutamate Receptors and First-Episode Schizophrenia.
Published in:
Journal of Personalized Medicine, 2021, v. 11, n. 12, p. 1250, doi. 10.3390/jpm11121250
By:
- Hirschfeldova, Katerina;
- Cerny, Jiri;
- Bozikova, Paulina;
- Kuchtiak, Viktor;
- Rausch, Tobias;
- Benes, Vladimir;
- Spaniel, Filip;
- Gregus, David;
- Horacek, Jiri;
- Vyklicky, Ladislav;
- Balik, Ales
Publication type:
Article
Chromatin accessibility landscape of pediatric T‐lymphoblastic leukemia and human T‐cell precursors.
Published in:
EMBO Molecular Medicine, 2020, v. 12, n. 9, p. 1, doi. 10.15252/emmm.202012104
By:
- Erarslan‐Uysal, Büşra;
- Kunz, Joachim B;
- Rausch, Tobias;
- Richter‐Pechańska, Paulina;
- Belzen, Ianthe AEM;
- Frismantas, Viktoras;
- Bornhauser, Beat;
- Ordoñez‐Rueada, Diana;
- Paulsen, Malte;
- Benes, Vladimir;
- Stanulla, Martin;
- Schrappe, Martin;
- Cario, Gunnar;
- Escherich, Gabriele;
- Bakharevich, Kseniya;
- Kirschner‐Schwabe, Renate;
- Eckert, Cornelia;
- Loukanov, Tsvetomir;
- Gorenflo, Matthias;
- Waszak, Sebastian M
Publication type:
Article
PDX models recapitulate the genetic and epigenetic landscape of pediatric T‐cell leukemia.
Published in:
EMBO Molecular Medicine, 2018, v. 10, n. 12, p. N.PAG, doi. 10.15252/emmm.201809443
By:
- Richter‐Pechańska, Paulina;
- Kunz, Joachim B;
- Bornhauser, Beat;
- Knebel Doeberitz, Caroline;
- Rausch, Tobias;
- Erarslan‐Uysal, Büşra;
- Assenov, Yassen;
- Frismantas, Viktoras;
- Marovca, Blerim;
- Waszak, Sebastian M;
- Zimmermann, Martin;
- Seemann, Julia;
- Happich, Margit;
- Stanulla, Martin;
- Schrappe, Martin;
- Cario, Gunnar;
- Escherich, Gabriele;
- Bakharevich, Kseniya;
- Kirschner‐Schwabe, Renate;
- Eckert, Cornelia
Publication type:
Article
Genomic structural variations lead to dysregulation of important coding and non‐coding RNA species in dilated cardiomyopathy.
Published in:
EMBO Molecular Medicine, 2018, v. 10, n. 1, p. 107, doi. 10.15252/emmm.201707838
By:
- Haas, Jan;
- Mester, Stefan;
- Lai, Alan;
- Frese, Karen S.;
- Sedaghat‐Hamedani, Farbod;
- Kayvanpour, Elham;
- Rausch, Tobias;
- Nietsch, Rouven;
- Boeckel, Jes‐Niels;
- Carstensen, Avisha;
- Völkers, Mirko;
- Dietrich, Carsten;
- Pils, Dietmar;
- Amr, Ali;
- Holzer, Daniel B.;
- Martins Bordalo, Diana;
- Oehler, Daniel;
- Weis, Tanja;
- Mereles, Derliz;
- Buss, Sebastian
Publication type:
Article
Tracy: basecalling, alignment, assembly and deconvolution of sanger chromatogram trace files.
Published in:
BMC Genomics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12864-020-6635-8
By:
- Rausch, Tobias;
- Fritz, Markus Hsi-Yang;
- Untergasser, Andreas;
- Benes, Vladimir
Publication type:
Article
The effects of common structural variants on 3D chromatin structure.
Published in:
BMC Genomics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12864-020-6516-1
By:
- Shanta, Omar;
- Noor, Amina;
- Human Genome Structural Variation Consortium (HGSVC);
- Chaisson, Mark J. P.;
- Sanders, Ashley D.;
- Zhao, Xuefang;
- Malhotra, Ankit;
- Porubsky, David;
- Rausch, Tobias;
- Gardner, Eugene J.;
- Rodriguez, Oscar L.;
- Guo, Li;
- Collins, Ryan L.;
- Fan, Xian;
- Wen, Jia;
- Handsaker, Robert E.;
- Fairley, Susan;
- Kronenberg, Zev N.;
- Kong, Xiangmeng;
- Hormozdiari, Fereydoun
Publication type:
Article
Coordinated expression and genetic polymorphisms in Grainyhead-like genes in human non-melanoma skin cancers.
Published in:
2018
By:
- Kikulska, Agnieszka;
- Rausch, Tobias;
- Krzywinska, Ewa;
- Pawlak, Magdalena;
- Wilczynski, Bartek;
- Benes, Vladimir;
- Rutkowski, Piotr;
- Wilanowski, Tomasz
Publication type:
journal article
Functional analysis of structural variants in single cells using Strand-seq.
Published in:
Nature Biotechnology, 2023, v. 41, n. 6, p. 832, doi. 10.1038/s41587-022-01551-4
By:
- Jeong, Hyobin;
- Grimes, Karen;
- Rauwolf, Kerstin K.;
- Bruch, Peter-Martin;
- Rausch, Tobias;
- Hasenfeld, Patrick;
- Benito, Eva;
- Roider, Tobias;
- Sabarinathan, Radhakrishnan;
- Porubsky, David;
- Herbst, Sophie A.;
- Erarslan-Uysal, Büşra;
- Jann, Johann-Christoph;
- Marschall, Tobias;
- Nowak, Daniel;
- Bourquin, Jean-Pierre;
- Kulozik, Andreas E.;
- Dietrich, Sascha;
- Bornhauser, Beat;
- Sanders, Ashley D.
Publication type:
Article
Single-cell analysis of structural variations and complex rearrangements with tri-channel processing.
Published in:
Nature Biotechnology, 2020, v. 38, n. 3, p. 343, doi. 10.1038/s41587-019-0366-x
By:
- Sanders, Ashley D.;
- Meiers, Sascha;
- Ghareghani, Maryam;
- Porubsky, David;
- Jeong, Hyobin;
- van Vliet, M. Alexandra C. C.;
- Rausch, Tobias;
- Richter-Pechańska, Paulina;
- Kunz, Joachim B.;
- Jenni, Silvia;
- Bolognini, Davide;
- Longo, Gabriel M. C.;
- Raeder, Benjamin;
- Kinanen, Venla;
- Zimmermann, Jürgen;
- Benes, Vladimir;
- Schrappe, Martin;
- Mardin, Balca R.;
- Kulozik, Andreas E.;
- Bornhauser, Beat
Publication type:
Article
A highly soluble Sleeping Beauty transposase improves control of gene insertion.
Published in:
Nature Biotechnology, 2019, v. 37, n. 12, p. 1502, doi. 10.1038/s41587-019-0291-z
By:
- Querques, Irma;
- Mades, Andreas;
- Zuliani, Cecilia;
- Miskey, Csaba;
- Alb, Miriam;
- Grueso, Esther;
- Machwirth, Markus;
- Rausch, Tobias;
- Einsele, Hermann;
- Ivics, Zoltán;
- Hudecek, Michael;
- Barabas, Orsolya
Publication type:
Article
Assembly and diploid architecture of an individual human genome via single-molecule technologies.
Published in:
Nature Methods, 2015, v. 12, n. 8, p. 780, doi. 10.1038/nmeth.3454
By:
- Pendleton, Matthew;
- Sebra, Robert;
- Pang, Andy Wing Chun;
- Ummat, Ajay;
- Franzen, Oscar;
- Rausch, Tobias;
- Stütz, Adrian M;
- Stedman, William;
- Anantharaman, Thomas;
- Hastie, Alex;
- Dai, Heng;
- Fritz, Markus Hsi-Yang;
- Cao, Han;
- Cohain, Ariella;
- Deikus, Gintaras;
- Durrett, Russell E;
- Blanchard, Scott C;
- Altman, Roger;
- Chin, Chen-Shan;
- Guo, Yan
Publication type:
Article
TRiCoLOR: tandem repeat profiling using whole-genome long-read sequencing data.
Published in:
GigaScience, 2020, v. 9, n. 10, p. 1, doi. 10.1093/gigascience/giaa101
By:
- Bolognini, Davide;
- Magi, Alberto;
- Benes, Vladimir;
- Korbel, Jan O;
- Rausch, Tobias
Publication type:
Article
Mitoferrin2 is a synthetic lethal target for chromosome 8p deleted cancers.
Published in:
Genome Medicine, 2024, v. 16, n. 1, p. 1, doi. 10.1186/s13073-024-01357-w
By:
- Krieg, Stephan;
- Rohde, Thomas;
- Rausch, Tobias;
- Butthof, Luise;
- Wendler-Link, Lena;
- Eckert, Christoph;
- Breuhahn, Kai;
- Galy, Bruno;
- Korbel, Jan;
- Billmann, Maximilian;
- Breinig, Marco;
- Tschaharganeh, Darjus F.
Publication type:
Article
Multi-platform discovery of haplotype-resolved structural variation in human genomes.
Published in:
Nature Communications, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41467-018-08148-z
By:
- Chaisson, Mark J. P.;
- Sanders, Ashley D.;
- Zhao, Xuefang;
- Malhotra, Ankit;
- Porubsky, David;
- Rausch, Tobias;
- Gardner, Eugene J.;
- Rodriguez, Oscar L.;
- Guo, Li;
- Collins, Ryan L.;
- Fan, Xian;
- Wen, Jia;
- Handsaker, Robert E.;
- Fairley, Susan;
- Kronenberg, Zev N.;
- Kong, Xiangmeng;
- Hormozdiari, Fereydoun;
- Lee, Dillon;
- Wenger, Aaron M.;
- Hastie, Alex R.
Publication type:
Article
Metagenomic analysis of primary colorectal carcinomas and their metastases identifies potential microbial risk factors.
Published in:
Molecular Oncology, 2021, v. 15, n. 12, p. 3363, doi. 10.1002/1878-0261.13070
By:
- Marongiu, Luigi;
- Landry, Jonathan J. M.;
- Rausch, Tobias;
- Abba, Mohammed L.;
- Delecluse, Susanne;
- Delecluse, Henri‐Jacques;
- Allgayer, Heike
Publication type:
Article
Robust consensus computation.
Published in:
BMC Bioinformatics, 2008, v. 9, p. 1, doi. 10.1186/1471-2105-9-S10-P4
By:
- Rausch, Tobias;
- Emde, Anne-Katrin;
- Reinert, Knut
Publication type:
Article
SeqAn An efficient, generic C++ library for sequence analysis.
Published in:
2008
By:
- Döring, Andreas;
- Weese, David;
- Rausch, Tobias;
- Reinert, Knut
Publication type:
Product Review
The Relation between Parents' Child-Rearing Behavior and Their Socioeconomic Status in a Developing Country Context: A Case from West Bengal, India.
Published in:
Zeitschrift für Internationale Bildungsforschung und Entwicklungspädagogik, 2020, v. 43, n. 2, p. 33, doi. 10.31244/zep.2020.02.06
By:
- Ghosh, Saikat;
- Rausch, Tobias
Publication type:
Article
MEDU-11. MOLECULAR CHARACTERIZATION OF ETMRs REVEALS A ROLE FOR R-LOOP MEDIATED CHROMOSOMAL INSTABILITY.
Published in:
Neuro-Oncology, 2019, v. 21, p. ii105, doi. 10.1093/neuonc/noz036.170
By:
- Lambo, Sander;
- Gröbner, Susanne;
- Rausch, Tobias;
- Waszak, Sebastian;
- Schmidt, Christin;
- Gorthi, Aparna;
- Romero, Carolina;
- Mauermann, Monika;
- Brabetz, Sebastian;
- Krausert, Sonja;
- Uro-Coste, Emmanuelle;
- Bourdeaut, Franck;
- Huang, Annie;
- Bishop, Alexander;
- Pfister, Stefan;
- Korshunov, Andrey;
- Kool, Marcel
Publication type:
Article
Identification of novel sequence variations in microRNAs in chronic lymphocytic leukemia.
Published in:
Carcinogenesis, 2014, v. 35, n. 5, p. 992, doi. 10.1093/carcin/bgt396
By:
- Kminkova, Jana;
- Mraz, Marek;
- Zaprazna, Kristina;
- Navrkalova, Veronika;
- Tichy, Boris;
- Plevova, Karla;
- Malcikova, Jitka;
- Cerna, Katerina;
- Rausch, Tobias;
- Benes, Vladimir;
- Brychtova, Yvona;
- Doubek, Michael;
- Mayer, Jiri;
- Pospisilova, Sarka
Publication type:
Article
Characterization of Two Historic Smallpox Specimens from a Czech Museum.
Published in:
Viruses (1999-4915), 2017, v. 9, n. 8, p. 200, doi. 10.3390/v9080200
By:
- Pajer, Petr;
- Dresler, Jiri;
- Kabíckova, Hana;
- Písa, Libor;
- Aganov, Pavel;
- Fucik, Karel;
- Elleder, Daniel;
- Hron, Tomas;
- Kuzelka, Vitezslav;
- Velemínsky, Petr;
- Klimentova, Jana;
- Fucikova, Alena;
- Pejchal, Jaroslav;
- Hrabakova, Rita;
- Benes, Vladimir;
- Rausch, Tobias;
- Dundr, Pavel;
- Pilin, Alexander;
- Cabala, Radomir;
- Hubalek, Martin
Publication type:
Article
Genomic insights into the pathogenesis of Epstein–Barr virus-associated diffuse large B-cell lymphoma by whole-genome and targeted amplicon sequencing.
Published in:
Blood Cancer Journal, 2021, v. 11, n. 5, p. 1, doi. 10.1038/s41408-021-00493-5
By:
- Gebauer, Niklas;
- Künstner, Axel;
- Ketzer, Julius;
- Witte, Hanno M.;
- Rausch, Tobias;
- Benes, Vladimir;
- Zimmermann, Jürgen;
- Gebauer, Judith;
- Merz, Hartmut;
- Bernard, Veronica;
- Harder, Lana;
- Ratjen, Katharina;
- Gesk, Stefan;
- Peter, Wolfgang;
- Busch, Yannik;
- Trojok, Peter;
- von Bubnoff, Nikolas;
- Biersack, Harald;
- Busch, Hauke;
- Feller, Alfred C.
Publication type:
Article
Potential protective role of Grainyhead-like genes in the development of clear cell renal cell carcinoma.
Published in:
Molecular Carcinogenesis, 2017, v. 56, n. 11, p. 2414, doi. 10.1002/mc.22682
By:
- Pawlak, Magdalena;
- Kikulska, Agnieszka;
- Wrzesinski, Tomasz;
- Rausch, Tobias;
- Kwias, Zbigniew;
- Wilczynski, Bartek;
- Benes, Vladimir;
- Wesoly, Joanna;
- Wilanowski, Tomasz
Publication type:
Article
An integrated map of structural variation in 2,504 human genomes.
Published in:
Nature, 2015, v. 526, n. 7571, p. 75, doi. 10.1038/nature15394
By:
- Sudmant, Peter H.;
- Rausch, Tobias;
- Gardner, Eugene J.;
- Handsaker, Robert E.;
- Abyzov, Alexej;
- Huddleston, John;
- Zhang, Yan;
- Ye, Kai;
- Jun, Goo;
- Hsi-Yang Fritz, Markus;
- Konkel, Miriam K.;
- Malhotra, Ankit;
- Stütz, Adrian M.;
- Shi, Xinghua;
- Paolo Casale, Francesco;
- Chen, Jieming;
- Hormozdiari, Fereydoun;
- Dayama, Gargi;
- Chen, Ken;
- Malig, Maika
Publication type:
Article
Dissecting the genomic complexity underlying medulloblastoma.
Published in:
Nature, 2012, v. 488, n. 7409, p. 100, doi. 10.1038/nature11284
By:
- Jones, David T. W.;
- Jäger, Natalie;
- Kool, Marcel;
- Zichner, Thomas;
- Hutter, Barbara;
- Sultan, Marc;
- Cho, Yoon-Jae;
- Pugh, Trevor J.;
- Hovestadt, Volker;
- Stütz, Adrian M.;
- Rausch, Tobias;
- Warnatz, Hans-Jörg;
- Ryzhova, Marina;
- Bender, Sebastian;
- Sturm, Dominik;
- Pleier, Sabrina;
- Cin, Huriye;
- Pfaff, Elke;
- Sieber, Laura;
- Wittmann, Andrea
Publication type:
Article
Corrigendum: Driver mutations in histone H3.3 and chromatin remodelling genes in paediatric glioblastoma.
Published in:
2012
By:
- Schwartzentruber, Jeremy;
- Korshunov, Andrey;
- Liu, Xiao-Yang;
- Jones, David T. W.;
- Pfaff, Elke;
- Jacob, Karine;
- Sturm, Dominik;
- Fontebasso, Adam M.;
- Quang, Dong-Anh Khuong;
- Tönjes, Martje;
- Hovestadt, Volker;
- Albrecht, Steffen;
- Kool, Marcel;
- Nantel, Andre;
- Konermann, Carolin;
- Lindroth, Anders;
- Jäger, Natalie;
- Rausch, Tobias;
- Ryzhova, Marina;
- Korbel, Jan O.
Publication type:
Erratum
Driver mutations in histone H3.3 and chromatin remodelling genes in paediatric glioblastoma.
Published in:
Nature, 2012, v. 482, n. 7384, p. 226, doi. 10.1038/nature10833
By:
- Schwartzentruber, Jeremy;
- Korshunov, Andrey;
- Liu, Xiao-Yang;
- Jones, David T. W.;
- Pfaff, Elke;
- Jacob, Karine;
- Sturm, Dominik;
- Fontebasso, Adam M.;
- Quang, Dong-Anh Khuong;
- Tönjes, Martje;
- Hovestadt, Volker;
- Albrecht, Steffen;
- Kool, Marcel;
- Nantel, Andre;
- Konermann, Carolin;
- Lindroth, Anders;
- Jäger, Natalie;
- Rausch, Tobias;
- Ryzhova, Marina;
- Korbel, Jan O.
Publication type:
Article
Identification of cytokine-induced modulation of microRNA expression and secretion as measured by a novel microRNA specific qPCR assay.
Published in:
Scientific Reports, 2015, p. 11590, doi. 10.1038/srep11590
By:
- Benes, Vladimir;
- Collier, Paul;
- Kordes, Claus;
- Stolte, Jens;
- Rausch, Tobias;
- Muckentaler, Martina U.;
- Häussinger, Dieter;
- Castoldi, Mirco
Publication type:
Article
ICGC PedBrain - dissecting the genomic complexity underlying medulloblastoma using whole-genome sequencing.
Published in:
2012
By:
- Jäger, Natalie;
- Jones, David T. W.;
- Kool, Marcel;
- Zichner, Thomas;
- Hutter, Barbara;
- Sultan, Marc;
- Yoon-Jae Cho;
- Pugh, Trevor J.;
- Hovestadt, Volker;
- Stütz, Adrian M.;
- Rausch, Tobias;
- Warnatz, Hans-Jörg;
- Brors, Benedikt;
- Northcott, Paul A.;
- Taylor, Michael D.;
- Meyerson, Matthew;
- Pomeroy, Scott L.;
- Yaspo, Marie-Laure;
- Korbel, Jan O.;
- Korshunov, Andrey
Publication type:
Abstract
ToTem: a tool for variant calling pipeline optimization.
Published in:
BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2227-x
By:
- Tom, Nikola;
- Tom, Ondrej;
- Malcikova, Jitka;
- Pavlova, Sarka;
- Kubesova, Blanka;
- Rausch, Tobias;
- Kolarik, Miroslav;
- Benes, Vladimir;
- Bystry, Vojtech;
- Pospisilova, Sarka
Publication type:
Article
MCM3AP and POMP Mutations Cause a DNA-Repair and DNA-Damage-Signaling Defect in an Immunodeficient Child.
Published in:
Human Mutation, 2016, v. 37, n. 3, p. 257, doi. 10.1002/humu.22939
By:
- Gatz, Susanne A.;
- Salles, Daniela;
- Jacobsen, Eva‐Maria;
- Dörk, Thilo;
- Rausch, Tobias;
- Aydin, Sevtap;
- Surowy, Harald;
- Volcic, Meta;
- Vogel, Walther;
- Debatin, Klaus‐Michael;
- Stütz, Adrian M.;
- Schwarz, Klaus;
- Pannicke, Ulrich;
- Hess, Timo;
- Korbel, Jan O.;
- Schulz, Ansgar S.;
- Schumacher, Johannes;
- Wiesmüller, Lisa
Publication type:
Article
Impact and characterization of serial structural variations across humans and great apes.
Published in:
Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-52027-9
By:
- Höps, Wolfram;
- Rausch, Tobias;
- Jendrusch, Michael;
- Human Genome Structural Variation Consortium (HGSVC);
- Ashraf, Hufsah;
- Audano, Peter A.;
- Austine, Ola;
- Basile, Anna O.;
- Beck, Christine R.;
- Jan Bonder, Marc;
- Byrska-Bishop, Marta;
- Chaisson, Mark J. P.;
- Chong, Zechen;
- Corvelo, André;
- Devine, Scott E.;
- Ebert, Peter;
- Ebler, Jana;
- Eichler, Evan E.;
- Gerstein, Mark B.;
- Hallast, Pille
Publication type:
Article
VISOR: a versatile haplotype-aware structural variant simulator for short- and long-read sequencing.
Published in:
Bioinformatics, 2020, v. 36, n. 4, p. 1267, doi. 10.1093/bioinformatics/btz719
By:
- Bolognini, Davide;
- Sanders, Ashley;
- Korbel, Jan O;
- Magi, Alberto;
- Benes, Vladimir;
- Rausch, Tobias
Publication type:
Article
Alfred: interactive multi-sample BAM alignment statistics, feature counting and feature annotation for long- and short-read sequencing.
Published in:
Bioinformatics, 2019, v. 35, n. 14, p. 2489, doi. 10.1093/bioinformatics/bty1007
By:
- Rausch, Tobias;
- Fritz, Markus Hsi-Yang;
- Korbel, Jan O;
- Benes, Vladimir
Publication type:
Article
DELLY: structural variant discovery by integrated paired-end and split-read analysis.
Published in:
Bioinformatics, 2012, v. 28, n. 18, p. i333, doi. 10.1093/bioinformatics/bts378
By:
- Rausch, Tobias;
- Zichner, Thomas;
- Schlattl, Andreas;
- Stütz, Adrian M.;
- Benes, Vladimir;
- Korbel, Jan O.
Publication type:
Article
A consistency-based consensus algorithm for de novo and reference-guided sequence assembly of short reads.
Published in:
Bioinformatics, 2009, v. 25, n. 9, p. 1118, doi. 10.1093/bioinformatics/btp131
By:
- Tobias Rausch;
- Sergey Koren;
- Gennady Denisov;
- David Weese;
- Anne-Katrin Emde;
- Andreas Döring;
- Knut Reinert
Publication type:
Article
Segment-based multiple sequence alignment.
Published in:
Bioinformatics, 2008, v. 24, n. 16, p. i187, doi. 10.1093/bioinformatics/btn281
By:
- Tobias Rausch;
- Anne-Katrin Emde;
- David Weese;
- Andreas Döring;
- Cedric Notredame;
- Knut Reinert
Publication type:
Article

Found: 37