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Identification of functional features underlying heat stress response in Sprague–Dawley rats using mixed linear models.
Published in:
Scientific Reports, 2022, v. 12, n. 1, p. 1, doi. 10.1038/s41598-022-11701-y
By:
- Kotlarz, Krzysztof;
- Mielczarek, Magda;
- Wang, Yachun;
- Dou, Jinhuan;
- Suchocki, Tomasz;
- Szyda, Joanna
Publication type:
Article
Gene Variants Related to Cardiovascular and Pulmonary Diseases May Correlate with Severe Outcome of COVID-19.
Published in:
International Journal of Molecular Sciences, 2022, v. 23, n. 15, p. 8696, doi. 10.3390/ijms23158696
By:
- Sypniewski, Mateusz;
- Król, Zbigniew J.;
- Szyda, Joanna;
- Kaja, Elżbieta;
- Mroczek, Magdalena;
- Suchocki, Tomasz;
- Lejman, Adrian;
- Stępień, Maria;
- Topolski, Piotr;
- Dąbrowski, Maciej;
- Kotlarz, Krzysztof;
- Aplas, Angelika;
- Wasiak, Michał;
- Wojtaszewska, Marzena;
- Zawadzki, Paweł;
- Pawlak, Agnieszka;
- Gil, Robert;
- Dobosz, Paula;
- Stojak, Joanna
Publication type:
Article
Beyond GWAS—Could Genetic Differentiation within the Allograft Rejection Pathway Shape Natural Immunity to COVID-19?
Published in:
International Journal of Molecular Sciences, 2022, v. 23, n. 11, p. 6272, doi. 10.3390/ijms23116272
By:
- Szyda, Joanna;
- Dobosz, Paula;
- Stojak, Joanna;
- Sypniewski, Mateusz;
- Suchocki, Tomasz;
- Kotlarz, Krzysztof;
- Mroczek, Magdalena;
- Stępień, Maria;
- Słomian, Dawid;
- Butkiewicz, Sławomir;
- Sztromwasser, Paweł;
- Liu, Jakub;
- Król, Zbigniew J.
Publication type:
Article
Application of mixed linear models for the estimation of functional effects on bovine stature based on SNP summary statistics from a whole-genome association study.
Published in:
Genetics Selection Evolution, 2022, v. 54, n. 1, p. 1, doi. 10.1186/s12711-022-00771-1
By:
- Kotlarz, Krzysztof;
- Kosinska-Selbi, Barbara;
- Cai, Zexi;
- Sahana, Goutam;
- Szyda, Joanna
Publication type:
Article
Exploring the impact of sequence context on errors in SNP genotype calling with whole genome sequencing data using AI-based autoencoder approach.
Published in:
NAR Genomics & Bioinformatics, 2024, v. 6, n. 3, p. 1, doi. 10.1093/nargab/lqae131
By:
- Kotlarz, Krzysztof;
- Mielczarek, Magda;
- Biecek, Przemysław;
- Guldbrandtsen, Bernt;
- Szyda, Joanna
Publication type:
Article
Nextflow vs. plain bash: different approaches to the parallelization of SNP calling from the whole genome sequence data.
Published in:
NAR Genomics & Bioinformatics, 2024, v. 6, n. 2, p. 1, doi. 10.1093/nargab/lqae040
By:
- Sztuka, Marek;
- Kotlarz, Krzysztof;
- Mielczarek, Magda;
- Hajduk, Piotr;
- Liu, Jakub;
- Szyda, Joanna
Publication type:
Article
Better safe than sorry—Whole-genome sequencing indicates that missense variants are significant in susceptibility to COVID-19.
Published in:
PLoS ONE, 2023, v. 17, n. 1, p. 1, doi. 10.1371/journal.pone.0279356
By:
- Słomian, Dawid;
- Szyda, Joanna;
- Dobosz, Paula;
- Stojak, Joanna;
- Michalska-Foryszewska, Anna;
- Sypniewski, Mateusz;
- Liu, Jakub;
- Kotlarz, Krzysztof;
- Suchocki, Tomasz;
- Mroczek, Magdalena;
- Stępień, Maria;
- Sztromwasser, Paweł;
- Król, Zbigniew J.
Publication type:
Article
An Explainable Deep Learning Classifier of Bovine Mastitis Based on Whole-Genome Sequence Data—Circumventing the p >> n Problem.
Published in:
International Journal of Molecular Sciences, 2024, v. 25, n. 9, p. 4715, doi. 10.3390/ijms25094715
By:
- Kotlarz, Krzysztof;
- Mielczarek, Magda;
- Biecek, Przemysław;
- Wojdak-Maksymiec, Katarzyna;
- Suchocki, Tomasz;
- Topolski, Piotr;
- Jagusiak, Wojciech;
- Szyda, Joanna
Publication type:
Article

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