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- Title
SNIKT: sequence-independent adapter identification and removal in long-read shotgun sequencing data.
- Authors
Ranjan, Piyush; Brown, Christopher A; Erb-Downward, John R; Dickson, Robert P
- Abstract
Summary Here, we introduce SNIKT, a command-line tool for sequence-independent visual confirmation and input-assisted removal of adapter contamination in whole-genome shotgun or metagenomic shotgun long-read sequencing DNA or RNA data. Availability and Implementation SNIKT is implemented in R and is compatible with Unix-like platforms. The source code, along with documentation, is freely available under an MIT license at https://github.com/piyuranjan/SNIKT. Supplementary information Supplementary data are available at Bioinformatics online.
- Subjects
SHOTGUN sequencing; INTERNET servers; PROTEIN-protein interactions; DNA sequencing; SOURCE code; METAGENOMICS
- Publication
Bioinformatics, 2022, Vol 38, Issue 15, p3830
- ISSN
1367-4803
- Publication type
Article
- DOI
10.1093/bioinformatics/btac389