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- Title
minoTour, real-time monitoring and analysis for nanopore sequencers.
- Authors
Munro, Rory; Santos, Roberto; Payne, Alexander; Forey, Teri; Osei, Solomon; Holmes, Nadine; Loose, Matthew
- Abstract
Summary minoTour offers a Laboratory Informations Management System (LIMS) system for Oxford Nanopore Technology sequencers, with real-time metrics and analysis available permanently for review. Integration of unique real-time automated analysis can reduce the time required to answer biological questions, including mapping and classification of sequence while a run is in progress. Real-time sequence data require new methods of analysis which do not wait for the completion of a run and minoTour provides a framework to allow users to exploit these features. Availability and implementation Source code and documentation are available at https://github.com/LooseLab/minotourcli and https://github.com/LooseLab/minotourapp. Docker images are available from https://hub.docker.com/r/adoni5/ , and can be installed using a preconfigured docker-compose script at https://github.com/LooseLab/minotour-docker. An example server is available at http://137.44.59.170. Supplementary information Supplementary data are available at Bioinformatics online.
- Subjects
LABORATORY management; NANOPORES; SOURCE code; STEVEDORES
- Publication
Bioinformatics, 2022, Vol 38, Issue 4, p1133
- ISSN
1367-4803
- Publication type
Article
- DOI
10.1093/bioinformatics/btab780