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Transcriptional Analysis of Acinetobacter sp. neg1 Capable of Degrading Ochratoxin A.
Published in:
Frontiers in Microbiology, 2017, v. 7, p. 1, doi. 10.3389/fmicb.2016.02162
By:
- Liuzzi, Vania C.;
- Fanelli, Francesca;
- Tristezza, Mariana;
- Haidukowski, Miriam;
- Picardi, Ernesto;
- Manzari, Caterina;
- Lionetti, Claudia;
- Grieco, Francesco;
- Logrieco, Antonio F.;
- Thon, Michael R.;
- Pesole, Graziano;
- Mulè, Giuseppina
Publication type:
Article
Accurate detection and quantification of SARS-CoV-2 genomic and subgenomic mRNAs by ddPCR and meta-transcriptomics analysis.
Published in:
Communications Biology, 2021, v. 4, n. 1, p. 1, doi. 10.1038/s42003-021-02748-0
By:
- Oranger, Annarita;
- Manzari, Caterina;
- Chiara, Matteo;
- Notario, Elisabetta;
- Fosso, Bruno;
- Parisi, Antonio;
- Bianco, Angelica;
- Iacobellis, Michela;
- d'Avenia, Morena;
- D'Erchia, Anna Maria;
- Pesole, Graziano
Publication type:
Article
Natural and after colon washing fecal samples: the two sides of the coin for investigating the human gut microbiome.
Published in:
Scientific Reports, 2022, v. 12, n. 1, p. 1, doi. 10.1038/s41598-022-20888-z
By:
- Piancone, Elisabetta;
- Fosso, Bruno;
- Marzano, Marinella;
- De Robertis, Mariangela;
- Notario, Elisabetta;
- Oranger, Annarita;
- Manzari, Caterina;
- Bruno, Silvia;
- Visci, Grazia;
- Defazio, Giuseppe;
- D'Erchia, Anna Maria;
- Filomena, Ermes;
- Maio, Dominga;
- Minelli, Martina;
- Vergallo, Ilaria;
- Minelli, Mauro;
- Pesole, Graziano
Publication type:
Article
Identification of an Amylomaltase from the Halophilic Archaeon Haloquadratum walsbyi by Functional Metagenomics: Structural and Functional Insights.
Published in:
Life (2075-1729), 2022, v. 12, n. 1, p. 85, doi. 10.3390/life12010085
By:
- Leoni, Claudia;
- Manzari, Caterina;
- Tran, Hai;
- Golyshin, Peter N.;
- Pesole, Graziano;
- Volpicella, Mariateresa;
- Ceci, Luigi R.
Publication type:
Article
Different substrates within a lake harbour connected but specialised microbial communities.
Published in:
Hydrobiologia, 2020, v. 847, n. 7, p. 1689, doi. 10.1007/s10750-019-04068-1
By:
- Eckert, Ester M.;
- Amalfitano, Stefano;
- Di Cesare, Andrea;
- Manzari, Caterina;
- Corno, Gianluca;
- Fontaneto, Diego
Publication type:
Article
Massive transcriptome sequencing of human spinal cord tissues provides new insights into motor neuron degeneration in ALS.
Published in:
Scientific Reports, 2017, v. 7, n. 1, p. 1, doi. 10.1038/s41598-017-10488-7
By:
- D’Erchia, Anna Maria;
- Gallo, Angela;
- Manzari, Caterina;
- Raho, Susanna;
- Horner, David S.;
- Chiara, Matteo;
- Valletti, Alessio;
- Aiello, Italia;
- Mastropasqua, Francesca;
- Ciaccia, Loredana;
- Locatelli, Franco;
- Pisani, Francesco;
- Nicchia, Grazia Paola;
- Svelto, Maria;
- Pesole, Graziano;
- Picardi, Ernesto
Publication type:
Article
Corrigendum: Profiling RNA editing in human tissues: towards the inosinome Atlas.
Published in:
Scientific Reports, 2016, p. 20755, doi. 10.1038/srep20755
By:
- Picardi, Ernesto;
- Manzari, Caterina;
- Mastropasqua, Francesca;
- Aiello, Italia;
- D'Erchia, Anna Maria;
- Pesole, Graziano
Publication type:
Article
Profiling RNA editing in human tissues: towards the inosinome Atlas.
Published in:
Scientific Reports, 2015, p. 1, doi. 10.1038/srep14941
By:
- Picardi, Ernesto;
- Manzari, Caterina;
- Mastropasqua, Francesca;
- Aiello, Italia;
- D'Erchia, Anna Maria;
- Pesole, Graziano
Publication type:
Article
Seasonal rather than spatial variability drives planktonic and benthic bacterial diversity in a microtidal lagoon and the adjacent open sea.
Published in:
Molecular Ecology, 2017, v. 26, n. 21, p. 5961, doi. 10.1111/mec.14363
By:
- Quero, Grazia Marina;
- Perini, Laura;
- Pesole, Graziano;
- Manzari, Caterina;
- Lionetti, Claudia;
- Bastianini, Mauro;
- Marini, Mauro;
- Luna, Gian Marco
Publication type:
Article
Comparison of ovarian mRNA expression levels in wild and hatchery-produced greater amberjack Seriola dumerili.
Published in:
Scientific Reports, 2024, v. 14, n. 1, p. 1, doi. 10.1038/s41598-024-69091-2
By:
- Lavecchia, Anna;
- De Virgilio, Caterina;
- Mansi, Luigi;
- Manzari, Caterina;
- Mylonas, Constantinos C.;
- Picardi, Ernesto;
- Pousis, Chrysovalentinos;
- Cox, Sharon N.;
- Ventriglia, Gianluca;
- Zupa, Rosa;
- Pesole, Graziano;
- Corriero, Aldo
Publication type:
Article
Chitinolytic Enzymes of the Hyperparasite Fungus Aphanocladium album : Genome-Wide Survey and Characterization of A Selected Enzyme.
Published in:
Microorganisms, 2023, v. 11, n. 5, p. 1357, doi. 10.3390/microorganisms11051357
By:
- Leoni, Claudia;
- Manzari, Caterina;
- Chiara, Matteo;
- Veronico, Pasqua;
- Bruno, Giovanni Luigi;
- Pesole, Graziano;
- Ceci, Luigi R.;
- Volpicella, Mariateresa
Publication type:
Article
Plant Health and Rhizosphere Microbiome: Effects of the Bionematicide Aphanocladium album in Tomato Plants Infested by Meloidogyne javanica.
Published in:
Microorganisms, 2020, v. 8, n. 12, p. 1922, doi. 10.3390/microorganisms8121922
By:
- Leoni, Claudia;
- Piancone, Elisabetta;
- Sasanelli, Nicola;
- Bruno, Giovanni Luigi;
- Manzari, Caterina;
- Pesole, Graziano;
- Ceci, Luigi R.;
- Volpicella, Mariateresa
Publication type:
Article
A Differential Metabarcoding Approach to Describe Taxonomy Profiles of Bacteria and Archaea in the Saltern of Margherita di Savoia (Italy).
Published in:
Microorganisms, 2020, v. 8, n. 6, p. 936, doi. 10.3390/microorganisms8060936
By:
- Leoni, Claudia;
- Volpicella, Mariateresa;
- Fosso, Bruno;
- Manzari, Caterina;
- Piancone, Elisabetta;
- Dileo, Maria C. G.;
- Arcadi, Erika;
- Yakimov, Michail;
- Pesole, Graziano;
- Ceci, Luigi R.
Publication type:
Article
Staphylococcus arlettae Genomics: Novel Insights on Candidate Antibiotic Resistance and Virulence Genes in an Emerging Opportunistic Pathogen.
Published in:
Microorganisms, 2019, v. 7, n. 11, p. 580, doi. 10.3390/microorganisms7110580
By:
- Lavecchia, Anna;
- Chiara, Matteo;
- De Virgilio, Caterina;
- Manzari, Caterina;
- Monno, Rosa;
- De Carlo, Armando;
- Pazzani, Carlo;
- Horner, David;
- Pesole, Graziano;
- Placido, Antonio
Publication type:
Article
Macroalgal microbiomes unveil a valuable genetic resource for halogen metabolism.
Published in:
Microbiome, 2024, v. 12, n. 1, p. 1, doi. 10.1186/s40168-023-01740-6
By:
- Lavecchia, Anna;
- Fosso, Bruno;
- Engelen, Aschwin H.;
- Borin, Sara;
- Manzari, Caterina;
- Picardi, Ernesto;
- Pesole, Graziano;
- Placido, Antonio
Publication type:
Article
No metagenomic evidence of tumorigenic viruses in cancers from a selected cohort of immunosuppressed subjects.
Published in:
Scientific Reports, 2019, v. 9, n. 1, p. 1, doi. 10.1038/s41598-019-56240-1
By:
- Passaro, Nunzia;
- Casagrande, Andrea;
- Chiara, Matteo;
- Fosso, Bruno;
- Manzari, Caterina;
- D'Erchia, Anna Maria;
- Iesari, Samuele;
- Pisani, Francesco;
- Famulari, Antonio;
- Tulissi, Patrizia;
- Mastrosimone, Stefania;
- Maresca, Maria Cristina;
- Mercante, Giuseppe;
- Spriano, Giuseppe;
- Corrado, Giacomo;
- Vizza, Enrico;
- Garbuglia, Anna Rosa;
- Capobianchi, Maria Rosaria;
- Mottini, Carla;
- Cenci, Alessandra
Publication type:
Article
The influence of invasive jellyfish blooms on the aquatic microbiome in a coastal lagoon (Varano, SE Italy) detected by an Illumina-based deep sequencing strategy.
Published in:
Biological Invasions, 2015, v. 17, n. 3, p. 923, doi. 10.1007/s10530-014-0810-2
By:
- Manzari, Caterina;
- Fosso, Bruno;
- Marzano, Marinella;
- Annese, Anita;
- Caprioli, Rosa;
- D'Erchia, Anna;
- Gissi, Carmela;
- Intranuovo, Marianna;
- Picardi, Ernesto;
- Santamaria, Monica;
- Scorrano, Simonetta;
- Sgaramella, Giuseppe;
- Stabili, Loredana;
- Piraino, Stefano;
- Pesole, Graziano
Publication type:
Article
Next generation sequencing of SARS-CoV-2 genomes: challenges, applications and opportunities.
Published in:
Briefings in Bioinformatics, 2021, v. 22, n. 2, p. 616, doi. 10.1093/bib/bbaa297
By:
- Chiara, Matteo;
- D'Erchia, Anna Maria;
- Gissi, Carmela;
- Manzari, Caterina;
- Parisi, Antonio;
- Resta, Nicoletta;
- Zambelli, Federico;
- Picardi, Ernesto;
- Pavesi, Giulio;
- Horner, David S;
- Pesole, Graziano
Publication type:
Article
Metabolic framework of spontaneous and synthetic sourdough metacommunities to reveal microbial players responsible for resilience and performance.
Published in:
Microbiome, 2022, v. 10, n. 1, p. 1, doi. 10.1186/s40168-022-01301-3
By:
- Calabrese, Francesco Maria;
- Ameur, Hana;
- Nikoloudaki, Olga;
- Celano, Giuseppe;
- Vacca, Mirco;
- Junior, Wilson JFLemos;
- Manzari, Caterina;
- Vertè, Fabienne;
- Di Cagno, Raffaella;
- Pesole, Graziano;
- De Angelis, Maria;
- Gobbetti, Marco
Publication type:
Article
Comparative Genomics Suggests a Taxonomic Revision of the Staphylococcus cohnii Species Complex.
Published in:
Genome Biology & Evolution, 2021, v. 13, n. 4, p. 1, doi. 10.1093/gbe/evab020
By:
- Lavecchia, Anna;
- Chiara, Matteo;
- Virgilio, Caterina De;
- Manzari, Caterina;
- Pazzani, Carlo;
- Horner, David;
- Pesole, Graziano;
- Placido, Antonio
Publication type:
Article
Geographic Population Structure in Epstein-Barr Virus Revealed by Comparative Genomics.
Published in:
Genome Biology & Evolution, 2016, v. 8, n. 11, p. 1, doi. 10.1093/gbe/evw226
By:
- Chiara, Matteo;
- Manzari, Caterina;
- Lionetti, Claudia;
- Mechelli, Rosella;
- Anastasiadou, Eleni;
- Buscarinu, Maria Chiara;
- Ristori, Giovanni;
- Salvetti, Marco;
- Picardi, Ernesto;
- D'Erchia, Anna Maria;
- Pesole, Graziano;
- Horner, David S.
Publication type:
Article
Comparative Genomics of Listeria Sensu Lato: Genus-Wide Differences in Evolutionary Dynamics and the Progressive Gain of Complex, Potentially Pathogenicity-Related Traits through Lateral Gene Transfer.
Published in:
Genome Biology & Evolution, 2015, v. 7, n. 8, p. 2154, doi. 10.1093/gbe/evv131
By:
- Chiara, Matteo;
- Caruso, Marta;
- D'Erchia, Anna Maria;
- Manzari, Caterina;
- Fraccalvieri, Rosa;
- Goffredo, Elisa;
- Latorre, Laura;
- Miccolupo, Angela;
- Padalino, Iolanda;
- Santagada, Gianfranco;
- Chiocco, Doriano;
- Pesole, Graziano;
- Horner, David S.;
- Parisi, Antonio
Publication type:
Article
Mitofusin 2 mutation drives cell proliferation in Charcot-Marie-Tooth 2A fibroblasts.
Published in:
Human Molecular Genetics, 2023, v. 32, n. 2, p. 333, doi. 10.1093/hmg/ddac201
By:
- Zanfardino, Paola;
- Longo, Giovanna;
- Amati, Alessandro;
- Morani, Federica;
- Picardi, Ernesto;
- Girolamo, Francesco;
- Pafundi, Mariella;
- Cox, Sharon N;
- Manzari, Caterina;
- Tullo, Apollonia;
- Doccini, Stefano;
- Santorelli, Filippo M;
- Petruzzella, Vittoria
Publication type:
Article
Complexity and Dynamics of the Winemaking Bacterial Communities in Berries, Musts, and Wines from Apulian Grape Cultivars through Time and Space.
Published in:
PLoS ONE, 2016, v. 11, n. 6, p. 1, doi. 10.1371/journal.pone.0157383
By:
- Marzano, Marinella;
- Fosso, Bruno;
- Manzari, Caterina;
- Grieco, Francesco;
- Intranuovo, Marianna;
- Cozzi, Giuseppe;
- Mulè, Giuseppina;
- Scioscia, Gaetano;
- Valiente, Gabriel;
- Tullo, Apollonia;
- Sbisà, Elisabetta;
- Pesole, Graziano;
- Santamaria, Monica
Publication type:
Article
Tackling critical parameters in metazoan meta-barcoding experiments: a preliminary study based on coxI DNA barcode.
Published in:
PeerJ, 2018, p. 1, doi. 10.7717/peerj.4845
By:
- Balech, Bachir;
- Sandionigi, Anna;
- Manzari, Caterina;
- Trucchi, Emiliano;
- Tullo, Apollonia;
- Licciulli, Flavio;
- Grillo, Giorgio;
- Sbisà, Elisabetta;
- De Felici, Stefano;
- Saccone, Cecilia;
- D'Erchia, Anna Maria;
- Cesaroni, Donatella;
- Casiraghi, Maurizio;
- Vicario, Saverio
Publication type:
Article
Corrigendum: Genome Sequencing and Comparative Analysis of Three Hanseniaspora uvarum Indigenous Wine Strains Reveal Remarkable Biotechnological Potential.
Published in:
2020
By:
- Guaragnella, Nicoletta;
- Chiara, Matteo;
- Capece, Angela;
- Romano, Patrizia;
- Pietrafesa, Rocchina;
- Siesto, Gabriella;
- Manzari, Caterina;
- Pesole, Graziano
Publication type:
Correction Notice
VID22 counteracts G-quadruplex-induced genome instability.
Published in:
Nucleic Acids Research, 2021, v. 49, n. 22, p. 12785, doi. 10.1093/nar/gkab1156
By:
- Galati, Elena;
- Bosio, Maria C;
- Novarina, Daniele;
- Chiara, Matteo;
- Bernini, Giulia M;
- Mozzarelli, Alessandro M;
- García-Rubio, Maria L;
- Gómez-González, Belén;
- Aguilera, Andrés;
- Carzaniga, Thomas;
- Todisco, Marco;
- Bellini, Tommaso;
- Nava, Giulia M;
- Frigè, Gianmaria;
- Sertic, Sarah;
- Horner, David S;
- Baryshnikova, Anastasia;
- Manzari, Caterina;
- D'Erchia, Anna M;
- Pesole, Graziano
Publication type:
Article
Persistent SARS-CoV-2 Infection in a Patient With Non-hodgkin Lymphoma: Intra-Host Genomic Diversity Analysis.
Published in:
Frontiers in Virology, 2022, p. 1, doi. 10.3389/fviro.2022.758191
By:
- Bianco, Angelica;
- Capozzi, Loredana;
- Del Sambro, Laura;
- Simone, Domenico;
- Pace, Lorenzo;
- Rondinone, Valeria;
- Difato, Laura M.;
- Miccolupo, Angela;
- Manzari, Caterina;
- Fedele, Alberto;
- Parisi, Antonio
Publication type:
Article
Detection of ribonucleotides embedded in DNA by Nanopore sequencing.
Published in:
Communications Biology, 2024, v. 7, n. 1, p. 1, doi. 10.1038/s42003-024-06077-w
By:
- Grasso, Lavinia;
- Fonzino, Adriano;
- Manzari, Caterina;
- Leonardi, Tommaso;
- Picardi, Ernesto;
- Gissi, Carmela;
- Lazzaro, Federico;
- Pesole, Graziano;
- Muzi-Falconi, Marco
Publication type:
Article
Yeast as a Model to Unravel New BRCA2 Functions in Cell Metabolism.
Published in:
Frontiers in Oncology, 2022, v. 12, p. 1, doi. 10.3389/fonc.2022.908442
By:
- Costanza, Alessandra;
- Guaragnella, Nicoletta;
- Bobba, Antonella;
- Manzari, Caterina;
- L'Abbate, Alberto;
- Giudice, Claudio Lo;
- Picardi, Ernesto;
- D'Erchia, Anna Maria;
- Pesole, Graziano;
- Giannattasio, Sergio
Publication type:
Article
Yeast as a Model to Unravel New BRCA2 Functions in Cell Metabolism.
Published in:
Frontiers in Oncology, 2022, v. 12, p. 1, doi. 10.3389/fonc.2022.908442
By:
- Costanza, Alessandra;
- Guaragnella, Nicoletta;
- Bobba, Antonella;
- Manzari, Caterina;
- L'Abbate, Alberto;
- Lo Giudice, Claudio;
- Picardi, Ernesto;
- D'Erchia, Anna Maria;
- Pesole, Graziano;
- Giannattasio, Sergio
Publication type:
Article
Yeast as a Model to Unravel New BRCA2 Functions in Cell Metabolism.
Published in:
Frontiers in Oncology, 2022, v. 12, p. 1, doi. 10.3389/fonc.2022.908442
By:
- Costanza, Alessandra;
- Guaragnella, Nicoletta;
- Bobba, Antonella;
- Manzari, Caterina;
- L'Abbate, Alberto;
- Giudice, Claudio Lo;
- Picardi, Ernesto;
- D'Erchia, Anna Maria;
- Pesole, Graziano;
- Giannattasio, Sergio
Publication type:
Article
Human Endometrial Microbiota at Term of Normal Pregnancies.
Published in:
Genes, 2019, v. 10, n. 12, p. 971, doi. 10.3390/genes10120971
By:
- Leoni, Claudia;
- Ceci, Oronzo;
- Manzari, Caterina;
- Fosso, Bruno;
- Volpicella, Mariateresa;
- Ferrari, Alessandra;
- Fiorella, Paola;
- Pesole, Graziano;
- Cicinelli, Ettore;
- Ceci, Luigi Ruggiero
Publication type:
Article
A platform independent RNA-Seq protocol for the detection of transcriptome complexity.
Published in:
BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-855
By:
- Calabrese, Claudia;
- Mangiulli, Marina;
- Manzari, Caterina;
- Paluscio, Anna Maria;
- Caratozzolo, Mariano Francesco;
- Marzano, Flaviana;
- Kurelac, Ivana;
- D'Erchia, Anna Maria;
- D'Elia, Domenica;
- Licciulli, Flavio;
- Liuni, Sabino;
- Picardi, Ernesto;
- Attimonelli, Marcella;
- Gasparre, Giuseppe;
- Porcelli, Anna Maria;
- Pesole, Graziano;
- Sbisà, Elisabetta;
- Tullo, Apollonia
Publication type:
Article
Profile of microbial communities on carbonate stones of the medieval church of San Leonardo di Siponto (Italy) by Illumina-based deep sequencing.
Published in:
Applied Microbiology & Biotechnology, 2016, v. 100, n. 19, p. 8537, doi. 10.1007/s00253-016-7656-8
By:
- Chimienti, Guglielmina;
- Piredda, Roberta;
- Pepe, Gabriella;
- Werf, Inez;
- Sabbatini, Luigia;
- Crecchio, Carmine;
- Ricciuti, Patrizia;
- D'Erchia, Anna;
- Manzari, Caterina;
- Pesole, Graziano
Publication type:
Article
Dysregulation of testis mRNA expression levels in hatchery-produced vs wild greater amberjack Seriola dumerili.
Published in:
Scientific Reports, 2023, v. 13, n. 1, p. 1, doi. 10.1038/s41598-023-40597-5
By:
- Lavecchia, Anna;
- Manzari, Caterina;
- Pousis, Chrysovalentinos;
- Mansi, Luigi;
- Cox, Sharon N.;
- Mylonas, Constantinos C.;
- Zupa, Rosa;
- Lo Giudice, Claudio;
- De Virgilio, Caterina;
- Picardi, Ernesto;
- Ventriglia, Gianluca;
- Pesole, Graziano;
- Corriero, Aldo
Publication type:
Article
Human PNPase causes RNA stabilization and accumulation of R-loops in the Escherichia coli model system.
Published in:
Scientific Reports, 2023, v. 13, n. 1, p. 1, doi. 10.1038/s41598-023-38924-x
By:
- Falchi, Federica A.;
- Forti, Francesca;
- Carnelli, Cristina;
- Genco, Aurelia;
- Pizzoccheri, Roberto;
- Manzari, Caterina;
- Pavesi, Giulio;
- Briani, Federica
Publication type:
Article
Genome Sequencing and Comparative Analysis of Three Hanseniaspora uvarum Indigenous Wine Strains Reveal Remarkable Biotechnological Potential.
Published in:
Frontiers in Microbiology, 2020, v. 10, p. 1, doi. 10.3389/fmicb.2019.03133
By:
- Guaragnella, Nicoletta;
- Chiara, Matteo;
- Capece, Angela;
- Romano, Patrizia;
- Pietrafesa, Rocchina;
- Siesto, Gabriella;
- Manzari, Caterina;
- Pesole, Graziano
Publication type:
Article
Targeted next-generation sequencing detects novel gene–phenotype associations and expands the mutational spectrum in cardiomyopathies.
Published in:
PLoS ONE, 2017, v. 12, n. 7, p. 1, doi. 10.1371/journal.pone.0181842
By:
- Forleo, Cinzia;
- D’Erchia, Anna Maria;
- Sorrentino, Sandro;
- Manzari, Caterina;
- Chiara, Matteo;
- Iacoviello, Massimo;
- Guaricci, Andrea Igoren;
- De Santis, Delia;
- Musci, Rita Leonarda;
- La Spada, Antonino;
- Marangelli, Vito;
- Pesole, Graziano;
- Favale, Stefano
Publication type:
Article

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