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Evaluation of domain generalization and adaptation on improving model robustness to temporal dataset shift in clinical medicine.
Published in:
Scientific Reports, 2022, v. 12, n. 1, p. 1, doi. 10.1038/s41598-022-06484-1
By:
- Guo, Lin Lawrence;
- Pfohl, Stephen R.;
- Fries, Jason;
- Johnson, Alistair E. W.;
- Posada, Jose;
- Aftandilian, Catherine;
- Shah, Nigam;
- Sung, Lillian
Publication type:
Article
The Stanford Medicine data science ecosystem for clinical and translational research.
Published in:
JAMIA Open, 2023, v. 6, n. 3, p. 1, doi. 10.1093/jamiaopen/ooad054
By:
- Callahan, Alison;
- Ashley, Euan;
- Datta, Somalee;
- Desai, Priyamvada;
- Ferris, Todd A.;
- Fries, Jason A.;
- Halaas, Michael;
- Langlotz, Curtis P.;
- Mackey, Sean;
- Posada, José D.;
- Pfeffer, Michael A.;
- Shah, Nigam H.
Publication type:
Article
EHR foundation models improve robustness in the presence of temporal distribution shift.
Published in:
Scientific Reports, 2023, v. 13, n. 1, p. 1, doi. 10.1038/s41598-023-30820-8
By:
- Guo, Lin Lawrence;
- Steinberg, Ethan;
- Fleming, Scott Lanyon;
- Posada, Jose;
- Lemmon, Joshua;
- Pfohl, Stephen R.;
- Shah, Nigam;
- Fries, Jason;
- Sung, Lillian
Publication type:
Article
Ontology-driven weak supervision for clinical entity classification in electronic health records.
Published in:
Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-22328-4
By:
- Fries, Jason A.;
- Steinberg, Ethan;
- Khattar, Saelig;
- Fleming, Scott L.;
- Posada, Jose;
- Callahan, Alison;
- Shah, Nigam H.
Publication type:
Article
A multi-center study on the adaptability of a shared foundation model for electronic health records.
Published in:
NPJ Digital Medicine, 2024, v. 7, n. 1, p. 1, doi. 10.1038/s41746-024-01166-w
By:
- Guo, Lin Lawrence;
- Fries, Jason;
- Steinberg, Ethan;
- Fleming, Scott Lanyon;
- Morse, Keith;
- Aftandilian, Catherine;
- Posada, Jose;
- Shah, Nigam;
- Sung, Lillian
Publication type:
Article
The shaky foundations of large language models and foundation models for electronic health records.
Published in:
NPJ Digital Medicine, 2023, v. 6, n. 1, p. 1, doi. 10.1038/s41746-023-00879-8
By:
- Wornow, Michael;
- Xu, Yizhe;
- Thapa, Rahul;
- Patel, Birju;
- Steinberg, Ethan;
- Fleming, Scott;
- Pfeffer, Michael A.;
- Fries, Jason;
- Shah, Nigam H.
Publication type:
Article
Snorkel: rapid training data creation with weak supervision.
Published in:
VLDB Journal International Journal on Very Large Data Bases, 2020, v. 29, n. 2/3, p. 709, doi. 10.1007/s00778-019-00552-1
By:
- Ratner, Alexander;
- Bach, Stephen H.;
- Ehrenberg, Henry;
- Fries, Jason;
- Wu, Sen;
- Ré, Christopher
Publication type:
Article
Perspective Toward Machine Learning Implementation in Pediatric Medicine: Mixed Methods Study.
Published in:
JMIR Medical Informatics, 2022, v. 10, n. 11, p. 1, doi. 10.2196/40039
By:
- Alexander, Natasha;
- Aftandilian, Catherine;
- Guo, Lin Lawrence;
- Plenert, Erin;
- Posada, Jose;
- Fries, Jason;
- Fleming, Scott;
- Johnson, Alistair;
- Shah, Nigam;
- Sung, Lillian
Publication type:
Article
Weakly supervised classification of aortic valve malformations using unlabeled cardiac MRI sequences.
Published in:
Nature Communications, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41467-019-11012-3
By:
- Fries, Jason A.;
- Varma, Paroma;
- Chen, Vincent S.;
- Xiao, Ke;
- Tejeda, Heliodoro;
- Saha, Priyanka;
- Dunnmon, Jared;
- Chubb, Henry;
- Maskatia, Shiraz;
- Fiterau, Madalina;
- Delp, Scott;
- Ashley, Euan;
- Ré, Christopher;
- Priest, James R.
Publication type:
Article
Self-supervised machine learning using adult inpatient data produces effective models for pediatric clinical prediction tasks.
Published in:
Journal of the American Medical Informatics Association, 2023, v. 30, n. 12, p. 2004, doi. 10.1093/jamia/ocad175
By:
- Lemmon, Joshua;
- Guo, Lin Lawrence;
- Steinberg, Ethan;
- Morse, Keith E;
- Fleming, Scott Lanyon;
- Aftandilian, Catherine;
- Pfohl, Stephen R;
- Posada, Jose D;
- Shah, Nigam;
- Fries, Jason;
- Sung, Lillian
Publication type:
Article
Measure what matters: Counts of hospitalized patients are a better metric for health system capacity planning for a reopening.
Published in:
2020
By:
- Kashyap, Sehj;
- Gombar, Saurabh;
- Yadlowsky, Steve;
- Callahan, Alison;
- Fries, Jason;
- Pinsky, Benjamin A;
- Shah, Nigam H
Publication type:
journal article
Estimating the efficacy of symptom-based screening for COVID-19.
Published in:
NPJ Digital Medicine, 2020, v. 3, n. 1, p. 1, doi. 10.1038/s41746-020-0300-0
By:
- Callahan, Alison;
- Steinberg, Ethan;
- Fries, Jason A.;
- Gombar, Saurabh;
- Patel, Birju;
- Corbin, Conor K.;
- Shah, Nigam H.
Publication type:
Article
Assessing the accuracy of automatic speech recognition for psychotherapy.
Published in:
NPJ Digital Medicine, 2020, v. 3, n. 1, p. 1, doi. 10.1038/s41746-020-0285-8
By:
- Miner, Adam S.;
- Haque, Albert;
- Fries, Jason A.;
- Fleming, Scott L.;
- Wilfley, Denise E.;
- Terence Wilson, G.;
- Milstein, Arnold;
- Jurafsky, Dan;
- Arnow, Bruce A.;
- Stewart Agras, W.;
- Fei-Fei, Li;
- Shah, Nigam H.
Publication type:
Article
Medical device surveillance with electronic health records.
Published in:
NPJ Digital Medicine, 2019, v. 2, n. 1, p. N.PAG, doi. 10.1038/s41746-019-0168-z
By:
- Callahan, Alison;
- Fries, Jason A.;
- Ré, Christopher;
- Huddleston III, James I.;
- Giori, Nicholas J.;
- Delp, Scott;
- Shah, Nigam H.
Publication type:
Article
Investigating Real-world Consequences of Biases in Commonly Used Clinical Calculators.
Published in:
American Journal of Managed Care, 2023, v. 29, n. 1, p. e1, doi. 10.37765/ajmc.2023.89306
By:
- Yoo, Richard M.;
- Dash, Dev;
- Lu, Jonathan H.;
- Genkins, Julian Z.;
- Rabbani, Naveed;
- Fries, Jason A.;
- Shah, Nigam H.
Publication type:
Article
Characterizing the limitations of using diagnosis codes in the context of machine learning for healthcare.
Published in:
BMC Medical Informatics & Decision Making, 2024, v. 24, n. 1, p. 1, doi. 10.1186/s12911-024-02449-8
By:
- Guo, Lin Lawrence;
- Morse, Keith E.;
- Aftandilian, Catherine;
- Steinberg, Ethan;
- Fries, Jason;
- Posada, Jose;
- Fleming, Scott Lanyon;
- Lemmon, Joshua;
- Jessa, Karim;
- Shah, Nigam;
- Sung, Lillian
Publication type:
Article
Sorghum Genome Sequencing by Methylation Filtration.
Published in:
PLoS Biology, 2005, v. 3, n. 1, p. 1, doi. 10.1371/journal.pbio.0030013
By:
- Bedell, Joseph A;
- Budiman, Muhammad A;
- Nunberg, Andrew;
- Citek, Robert W;
- Robbins, Dan;
- Jones, Joshua;
- Flick, Elizabeth;
- Rohlfing, Theresa;
- Fries, Jason;
- Bradford, Kourtney;
- McMenamy, Jennifer;
- Smith, Michael;
- Holeman, Heather;
- Roe, Bruce A;
- Wiley, Graham;
- Korf, Ian F;
- Rabinowicz, Pablo D;
- Lakey, Nathan;
- McCombie, W. Richard;
- Jeddeloh, Jeffrey A
Publication type:
Article
Sorghum Genome Sequencing by Methylation Filtration.
Published in:
PLoS Biology, 2005, v. 3, n. 1, p. 103, doi. 10.1371/journal.pbio.0030013
By:
- Bedell, Joseph A.;
- Budiman, Muhammad A.;
- Nunberg, Andrew;
- Citek, Robert W.;
- Robbins, Dan;
- Jones, Joshua;
- Flick, Elizabeth;
- Rohlfing, Theresa;
- Fries, Jason;
- Bradford, Kourtney;
- McMenamy, Jennifer;
- Smith, Michael;
- Holeman, Heather;
- Roe, Bruce A.;
- Wiley, Graham;
- Korf, Ian F.;
- Rabinowicz, Pablo D.;
- Lakey, Nathan;
- McCombie, W. Richard;
- Jeddeloh, Jeffrey A.
Publication type:
Article
Assessment of Extractability and Accuracy of Electronic Health Record Data for Joint Implant Registries.
Published in:
JAMA Network Open, 2021, v. 4, n. 3, p. e211728, doi. 10.1001/jamanetworkopen.2021.1728
By:
- Giori, Nicholas J.;
- Radin, John;
- Callahan, Alison;
- Fries, Jason A.;
- Halilaj, Eni;
- Ré, Christopher;
- Delp, Scott L.;
- Shah, Nigam H.;
- Harris, Alex H. S.
Publication type:
Article

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