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A Metagenomics Investigation of Carbohydrate-Active Enzymes along the Gastrointestinal Tract of Saudi Sheep.
Published in:
Frontiers in Microbiology, 2017, v. 8, p. 1, doi. 10.3389/fmicb.2017.00666
By:
- Al-Masaudi, Saad;
- El Kaoutari, Abdessamad;
- Drula, Elodie;
- Al-Mehdar, Hussein;
- Redwan, Elrashdy M.;
- Lombard, Vincent;
- Henrissat, Bernard
Publication type:
Article
Major proliferation of transposable elements shaped the genome of the soybean rust pathogen Phakopsora pachyrhizi.
Published in:
Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-37551-4
By:
- Gupta, Yogesh K.;
- Marcelino-Guimarães, Francismar C.;
- Lorrain, Cécile;
- Farmer, Andrew;
- Haridas, Sajeet;
- Ferreira, Everton Geraldo Capote;
- Lopes-Caitar, Valéria S.;
- Oliveira, Liliane Santana;
- Morin, Emmanuelle;
- Widdison, Stephanie;
- Cameron, Connor;
- Inoue, Yoshihiro;
- Thor, Kathrin;
- Robinson, Kelly;
- Drula, Elodie;
- Henrissat, Bernard;
- LaButti, Kurt;
- Bini, Aline Mara Rudsit;
- Paget, Eric;
- Singan, Vasanth
Publication type:
Article
PULDB: the expanded database of Polysaccharide Utilization Loci.
Published in:
Nucleic Acids Research, 2018, v. 46, n. D1, p. D677, doi. 10.1093/nar/gkx1022
By:
- Terrapon, Nicolas;
- Lombard, Vincent;
- Drula, Élodie;
- Lapébie, Pascal;
- Al-Masaudi, Saad;
- Gilbert, Harry J;
- Henrissat, Bernard
Publication type:
Article
The carbohydrate-active enzymes database (CAZy) in 2013.
Published in:
Nucleic Acids Research, 2014, v. 42, n. D1, p. D490, doi. 10.1093/nar/gkt1178
By:
- Lombard, Vincent;
- Golaconda Ramulu, Hemalatha;
- Drula, Elodie;
- Coutinho, Pedro M.;
- Henrissat, Bernard
Publication type:
Article
Genetic determinants of endophytism in the Arabidopsis root mycobiome.
Published in:
Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-27479-y
By:
- Mesny, Fantin;
- Miyauchi, Shingo;
- Thiergart, Thorsten;
- Pickel, Brigitte;
- Atanasova, Lea;
- Karlsson, Magnus;
- Hüttel, Bruno;
- Barry, Kerrie W.;
- Haridas, Sajeet;
- Chen, Cindy;
- Bauer, Diane;
- Andreopoulos, William;
- Pangilinan, Jasmyn;
- LaButti, Kurt;
- Riley, Robert;
- Lipzen, Anna;
- Clum, Alicia;
- Drula, Elodie;
- Henrissat, Bernard;
- Kohler, Annegret
Publication type:
Article
Cultivation and sequencing of rumen microbiome members from the Hungate1000 Collection.
Published in:
Nature Biotechnology, 2018, v. 36, n. 4, p. 359, doi. 10.1038/nbt.4110
By:
- Seshadri, Rekha;
- Leahy, Sinead C;
- Attwood, Graeme T;
- Teh, Koon Hoong;
- Lambie, Suzanne C;
- Cookson, Adrian L;
- Eloe-Fadrosh, Emiley A;
- Pavlopoulos, Georgios A;
- Hadjithomas, Michalis;
- Varghese, Neha J;
- Paez-Espino, David;
- Perry, Rechelle;
- Henderson, Gemma;
- Creevey, Christopher J;
- Terrapon, Nicolas;
- Lapebie, Pascal;
- Drula, Elodie;
- Lombard, Vincent;
- Rubin, Edward;
- Kyrpides, Nikos C
Publication type:
Article
Bacteroidetes use thousands of enzyme combinations to break down glycans.
Published in:
Nature Communications, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41467-019-10068-5
By:
- Lapébie, Pascal;
- Lombard, Vincent;
- Drula, Elodie;
- Terrapon, Nicolas;
- Henrissat, Bernard
Publication type:
Article
Candidate genes involved in biosynthesis and degradation of the main extracellular matrix polysaccharides of brown algae and their probable evolutionary history.
Published in:
BMC Genomics, 2024, v. 25, n. 1, p. 1, doi. 10.1186/s12864-024-10811-3
By:
- Mazéas, Lisa;
- Bouguerba-Collin, Ahlem;
- Cock, J. Mark;
- Denoeud, France;
- Godfroy, Olivier;
- Brillet-Guéguen, Loraine;
- Barbeyron, Tristan;
- Lipinska, Agnieszka P.;
- Delage, Ludovic;
- Corre, Erwan;
- Drula, Elodie;
- Henrissat, Bernard;
- Czjzek, Mirjam;
- Terrapon, Nicolas;
- Hervé, Cécile
Publication type:
Article
Speciation Underpinned by Unexpected Molecular Diversity in the Mycorrhizal Fungal Genus Pisolithus.
Published in:
Molecular Biology & Evolution, 2023, v. 40, n. 3, p. 1, doi. 10.1093/molbev/msad045
By:
- Plett, Jonathan M;
- Miyauchi, Shingo;
- Morin, Emmanuelle;
- Plett, Krista;
- Wong-Bajracharya, Johanna;
- Pereira, Maira de Freitas;
- Kuo, Alan;
- Henrissat, Bernard;
- Drula, Elodie;
- Wojtalewicz, Dominika;
- Riley, Robert;
- Pangilinan, Jasmyn;
- Andreopoulos, William;
- LaButti, Kurt;
- Daum, Chris;
- Yoshinaga, Yuko;
- Fauchery, Laure;
- Ng, Vivian;
- Lipzen, Anna;
- Barry, Kerrie
Publication type:
Article
Genomic Analysis Enlightens Agaricales Lifestyle Evolution and Increasing Peroxidase Diversity.
Published in:
Molecular Biology & Evolution, 2021, v. 38, n. 4, p. 1428, doi. 10.1093/molbev/msaa301
By:
- Ruiz-Dueñas, Francisco J;
- Barrasa, José M;
- Sánchez-García, Marisol;
- Camarero, Susana;
- Miyauchi, Shingo;
- Serrano, Ana;
- Linde, Dolores;
- Babiker, Rashid;
- Drula, Elodie;
- Ayuso-Fernández, Iván;
- Pacheco, Remedios;
- Padilla, Guillermo;
- Ferreira, Patricia;
- Barriuso, Jorge;
- Kellner, Harald;
- Castanera, Raúl;
- Alfaro, Manuel;
- Ramírez, Lucía;
- Pisabarro, Antonio G;
- Riley, Robert
Publication type:
Article
Multi‐omic analyses of exogenous nutrient bag decomposition by the black morel Morchella importuna reveal sustained carbon acquisition and transferring.
Published in:
Environmental Microbiology, 2019, v. 21, n. 10, p. 3909, doi. 10.1111/1462-2920.14741
By:
- Tan, Hao;
- Kohler, Annegret;
- Miao, Renyun;
- Liu, Tianhai;
- Zhang, Qiang;
- Zhang, Bo;
- Jiang, Lin;
- Wang, Yong;
- Xie, Liyuan;
- Tang, Jie;
- Li, Xiaolin;
- Liu, Lixu;
- Grigoriev, Igor V.;
- Daum, Chris;
- LaButti, Kurt;
- Lipzen, Anna;
- Kuo, Alan;
- Morin, Emmanuelle;
- Drula, Elodie;
- Henrissat, Bernard
Publication type:
Article
Expansion of the enzymatic repertoire of the CAZy database to integrate auxiliary redox enzymes.
Published in:
Biotechnology for Biofuels, 2013, v. 6, n. 1, p. 1, doi. 10.1186/1754-6834-6-41
By:
- Levasseur, Anthony;
- Drula, Elodie;
- Lombard, Vincent;
- Coutinho, Pedro M.;
- Henrissat, Bernard
Publication type:
Article
Diversity of genomic adaptations to the post‐fire environment in Pezizales fungi points to crosstalk between charcoal tolerance and sexual development.
Published in:
New Phytologist, 2022, v. 236, n. 3, p. 1154, doi. 10.1111/nph.18407
By:
- Steindorff, Andrei S.;
- Seong, Kyungyong;
- Carver, Akiko;
- Calhoun, Sara;
- Fischer, Monika S.;
- Stillman, Kyra;
- Liu, Haowen;
- Drula, Elodie;
- Henrissat, Bernard;
- Simpson, Hunter J.;
- Schilling, Jonathan S.;
- Lipzen, Anna;
- He, Guifen;
- Yan, Mi;
- Andreopoulos, Bill;
- Pangilinan, Jasmyn;
- LaButti, Kurt;
- Ng, Vivian;
- Traxler, Matthew;
- Bruns, Thomas D.
Publication type:
Article
Comparative genomics reveals a dynamic genome evolution in the ectomycorrhizal milk‐cap (Lactarius) mushrooms.
Published in:
New Phytologist, 2022, v. 235, n. 1, p. 306, doi. 10.1111/nph.18143
By:
- Lebreton, Annie;
- Tang, Nianwu;
- Kuo, Alan;
- LaButti, Kurt;
- Andreopoulos, William;
- Drula, Elodie;
- Miyauchi, Shingo;
- Barry, Kerrie;
- Clum, Alicia;
- Lipzen, Anna;
- Mousain, Daniel;
- Ng, Vivian;
- Wang, Ran;
- Dai, Yucheng;
- Henrissat, Bernard;
- Grigoriev, Igor V.;
- Guerin‐Laguette, Alexis;
- Yu, Fuqiang;
- Martin, Francis M.
Publication type:
Article
Evolutionary transition to the ectomycorrhizal habit in the genomes of a hyperdiverse lineage of mushroom‐forming fungi.
Published in:
New Phytologist, 2022, v. 233, n. 5, p. 2294, doi. 10.1111/nph.17892
By:
- Looney, Brian;
- Miyauchi, Shingo;
- Morin, Emmanuelle;
- Drula, Elodie;
- Courty, Pierre Emmanuel;
- Kohler, Annegret;
- Kuo, Alan;
- LaButti, Kurt;
- Pangilinan, Jasmyn;
- Lipzen, Anna;
- Riley, Robert;
- Andreopoulos, William;
- He, Guifen;
- Johnson, Jenifer;
- Nolan, Matt;
- Tritt, Andrew;
- Barry, Kerrie W.;
- Grigoriev, Igor V.;
- Nagy, László G.;
- Hibbett, David
Publication type:
Article
Evolutionary innovations through gain and loss of genes in the ectomycorrhizal Boletales.
Published in:
New Phytologist, 2022, v. 233, n. 3, p. 1383, doi. 10.1111/nph.17858
By:
- Wu, Gang;
- Miyauchi, Shingo;
- Morin, Emmanuelle;
- Kuo, Alan;
- Drula, Elodie;
- Varga, Torda;
- Kohler, Annegret;
- Feng, Bang;
- Cao, Yang;
- Lipzen, Anna;
- Daum, Christopher;
- Hundley, Hope;
- Pangilinan, Jasmyn;
- Johnson, Jenifer;
- Barry, Kerrie;
- LaButti, Kurt;
- Ng, Vivian;
- Ahrendt, Steven;
- Min, Byoungnam;
- Choi, In‐Geol
Publication type:
Article
Comparative genomics reveals unique wood‐decay strategies and fruiting body development in the Schizophyllaceae.
Published in:
New Phytologist, 2019, v. 224, n. 2, p. 902, doi. 10.1111/nph.16032
By:
- Almási, Éva;
- Sahu, Neha;
- Krizsán, Krisztina;
- Bálint, Balázs;
- Kovács, Gábor M.;
- Kiss, Brigitta;
- Cseklye, Judit;
- Drula, Elodie;
- Henrissat, Bernard;
- Nagy, István;
- Chovatia, Mansi;
- Adam, Catherine;
- LaButti, Kurt;
- Lipzen, Anna;
- Riley, Robert;
- Grigoriev, Igor V.;
- Nagy, László G.
Publication type:
Article
Comparative genomics of Rhizophagus irregularis, R. cerebriforme, R. diaphanus and Gigaspora rosea highlights specific genetic features in Glomeromycotina.
Published in:
New Phytologist, 2019, v. 222, n. 3, p. 1584, doi. 10.1111/nph.15687
By:
- Morin, Emmanuelle;
- Miyauchi, Shingo;
- San Clemente, Hélène;
- Chen, Eric C. H.;
- Pelin, Adrian;
- Providencia, Ivan;
- Ndikumana, Steve;
- Beaudet, Denis;
- Hainaut, Mathieu;
- Drula, Elodie;
- Kuo, Alan;
- Tang, Nianwu;
- Roy, Sébastien;
- Viala, Julie;
- Henrissat, Bernard;
- Grigoriev, Igor V.;
- Corradi, Nicolas;
- Roux, Christophe;
- Martin, Francis M.
Publication type:
Article
carbohydrate-active enzyme database: functions and literature.
Published in:
Nucleic Acids Research, 2022, v. 50, n. D1, p. D571, doi. 10.1093/nar/gkab1045
By:
- Drula, Elodie;
- Garron, Marie-Line;
- Dogan, Suzan;
- Lombard, Vincent;
- Henrissat, Bernard;
- Terrapon, Nicolas
Publication type:
Article
Co‑cultivation of the anaerobic fungus Caecomyces churrovis with Methanobacterium bryantii enhances transcription of carbohydrate binding modules, dockerins, and pyruvate formate lyases on specific substrates.
Published in:
Biotechnology for Biofuels, 2021, v. 14, n. 1, p. 1, doi. 10.1186/s13068-021-02083-w
By:
- Brown, Jennifer L.;
- Swift, Candice L.;
- Mondo, Stephen J.;
- Seppala, Susanna;
- Salamov, Asaf;
- Singan, Vasanth;
- Henrissat, Bernard;
- Drula, Elodie;
- Henske, John K.;
- Lee, Samantha;
- LaButti, Kurt;
- He, Guifen;
- Yan, Mi;
- Barry, Kerrie;
- Grigoriev, Igor V.;
- O'Malley, Michelle A.
Publication type:
Article
Functional exploration of the glycoside hydrolase family GH113.
Published in:
PLoS ONE, 2022, v. 17, n. 4, p. 1, doi. 10.1371/journal.pone.0267509
By:
- Couturier, Marie;
- Touvrey-Loiodice, Mélanie;
- Terrapon, Nicolas;
- Drula, Elodie;
- Buon, Laurine;
- Chirat, Christine;
- Henrissat, Bernard;
- Helbert, William
Publication type:
Article
Phylogenomics and Comparative Genomics Highlight Specific Genetic Features in Ganoderma Species.
Published in:
Journal of Fungi, 2022, v. 8, n. 3, p. 311, doi. 10.3390/jof8030311
By:
- Sun, Yi-Fei;
- Lebreton, Annie;
- Xing, Jia-Hui;
- Fang, Yu-Xuan;
- Si, Jing;
- Morin, Emmanuelle;
- Miyauchi, Shingo;
- Drula, Elodie;
- Ahrendt, Steven;
- Cobaugh, Kelly;
- Lipzen, Anna;
- Koriabine, Maxim;
- Riley, Robert;
- Kohler, Annegret;
- Barry, Kerrie;
- Henrissat, Bernard;
- Grigoriev, Igor V.;
- Martin, Francis M.;
- Cui, Bao-Kai
Publication type:
Article
A Putative Lignin Copper Oxidase from Trichoderma reesei.
Published in:
Journal of Fungi, 2021, v. 7, n. 8, p. 1, doi. 10.3390/jof7080643
By:
- Daou, Mariane;
- Bisotto, Alexandra;
- Haon, Mireille;
- Correia, Lydie Oliveira;
- Cottyn, Betty;
- Drula, Elodie;
- Garajová, Soňa;
- Bertrand, Emmanuel;
- Record, Eric;
- Navarro, David;
- Raouche, Sana;
- Baumberger, Stéphanie;
- Faulds, Craig B.
Publication type:
Article
Fungal Treatment for the Valorization of Technical Soda Lignin.
Published in:
Journal of Fungi, 2021, v. 7, n. 1, p. 1, doi. 10.3390/jof7010039
By:
- Daou, Mariane;
- Soto, Clementina Farfan;
- Majira, Amel;
- Cézard, Laurent;
- Cottyn, Betty;
- Pion, Florian;
- Navarro, David;
- Correia, Lydie Oliveira;
- Drula, Elodie;
- Record, Eric;
- Raouche, Sana;
- Baumberger, Stéphanie;
- Faulds, Craig B.
Publication type:
Article
The genome of the white-rot fungus Pycnoporus cinnabarinus: a basidiomycete model with a versatile arsenal for lignocellulosic biomass breakdown.
Published in:
BMC Genomics, 2014, v. 15, n. 1, p. 1, doi. 10.1186/1471-2164-15-486
By:
- Levasseur, Anthony;
- Lomascolo, Anne;
- Chabrol, Olivier;
- Ruiz-Dueñas, Francisco J.;
- Boukhris-Uzan, Eva;
- Piumi, François;
- Kües, Ursula;
- Ram, Arthur F. J.;
- Murat, Claude;
- Haon, Mireille;
- Benoit, Isabelle;
- Arfi, Yonathan;
- Chevret, Didier;
- Drula, Elodie;
- Kwon, Min Jin;
- Gouret, Philippe;
- Lesage-Meessen, Laurence;
- Lombard, Vincent;
- Mariette, Jérôme;
- Noirot, Céline
Publication type:
Article
Characterization of a new aryl-alcohol oxidase secreted by the phytopathogenic fungus Ustilago maydis.
Published in:
Applied Microbiology & Biotechnology, 2016, v. 100, n. 2, p. 697, doi. 10.1007/s00253-015-7021-3
By:
- Couturier, Marie;
- Mathieu, Yann;
- Li, Ai;
- Navarro, David;
- Drula, Elodie;
- Haon, Mireille;
- Grisel, Sacha;
- Ludwig, Roland;
- Berrin, Jean-Guy
Publication type:
Article
MyMiner: a web application for computer-assisted biocuration and text annotation.
Published in:
Bioinformatics, 2012, v. 28, n. 17, p. 2285, doi. 10.1093/bioinformatics/bts435
By:
- Salgado, David;
- Krallinger, Martin;
- Depaule, Marc;
- Drula, Elodie;
- Tendulkar, Ashish V.;
- Leitner, Florian;
- Valencia, Alfonso;
- Marcelle, Christophe
Publication type:
Article
Investigating Host Microbiota Relationships Through Functional Metagenomics.
Published in:
Frontiers in Microbiology, 2019, p. N.PAG, doi. 10.3389/fmicb.2019.01286
By:
- Laville, Elisabeth;
- Perrier, Josette;
- Bejar, Nada;
- Maresca, Marc;
- Esque, Jeremy;
- Tauzin, Alexandra S.;
- Bouhajja, Emna;
- Leclerc, Marion;
- Drula, Elodie;
- Henrissat, Bernard;
- Berdah, Stephane;
- Di Pasquale, Eric;
- Robe, Patrick;
- Potocki-Veronese, Gabrielle
Publication type:
Article
Gene family expansions and transcriptome signatures uncover fungal adaptations to wood decay.
Published in:
Environmental Microbiology, 2021, v. 23, n. 10, p. 5716, doi. 10.1111/1462-2920.15423
By:
- Hage, Hayat;
- Miyauchi, Shingo;
- Virágh, Máté;
- Drula, Elodie;
- Min, Byoungnam;
- Chaduli, Delphine;
- Navarro, David;
- Favel, Anne;
- Norest, Manon;
- Lesage‐Meessen, Laurence;
- Bálint, Balázs;
- Merényi, Zsolt;
- de Eugenio, Laura;
- Morin, Emmanuelle;
- Martínez, Angel T.;
- Baldrian, Petr;
- Štursová, Martina;
- Martínez, María Jesús;
- Novotny, Cenek;
- Magnuson, Jon K.
Publication type:
Article
Large-scale genome sequencing of mycorrhizal fungi provides insights into the early evolution of symbiotic traits.
Published in:
Nature Communications, 2020, v. 11, n. 1, p. N.PAG, doi. 10.1038/s41467-020-18795-w
By:
- Miyauchi, Shingo;
- Kiss, Enikő;
- Kuo, Alan;
- Drula, Elodie;
- Kohler, Annegret;
- Sánchez-García, Marisol;
- Morin, Emmanuelle;
- Andreopoulos, Bill;
- Barry, Kerrie W.;
- Bonito, Gregory;
- Buée, Marc;
- Carver, Akiko;
- Chen, Cindy;
- Cichocki, Nicolas;
- Clum, Alicia;
- Culley, David;
- Crous, Pedro W.;
- Fauchery, Laure;
- Girlanda, Mariangela;
- Hayes, Richard D.
Publication type:
Article
Lavender- and lavandin-distilled straws: an untapped feedstock with great potential for the production of high-added value compounds and fungal enzymes.
Published in:
Biotechnology for Biofuels, 2018, v. 11, n. 1, p. N.PAG, doi. 10.1186/s13068-018-1218-5
By:
- Lesage-Meessen, Laurence;
- Bou, Marine;
- Ginies, Christian;
- Chevret, Didier;
- Navarro, David;
- Drula, Elodie;
- Bonnin, Estelle;
- del Río, José C.;
- Odinot, Elise;
- Bisotto, Alexandra;
- Berrin, Jean-Guy;
- Sigoillot, Jean-Claude;
- Faulds, Craig B.;
- Lomascolo, Anne
Publication type:
Article
Integrative visual omics of the white-rot fungus Polyporus brumalis exposes the biotechnological potential of its oxidative enzymes for delignifying raw plant biomass.
Published in:
Biotechnology for Biofuels, 2018, v. 11, n. 1, p. N.PAG, doi. 10.1186/s13068-018-1198-5
By:
- Miyauchi, Shingo;
- Rancon, Anaïs;
- Drula, Elodie;
- Hage, Hayat;
- Chaduli, Delphine;
- Favel, Anne;
- Grisel, Sacha;
- Henrissat, Bernard;
- Herpoël-Gimbert, Isabelle;
- Ruiz-Dueñas, Francisco J.;
- Chevret, Didier;
- Hainaut, Matthieu;
- Lin, Junyan;
- Wang, Mei;
- Pangilinan, Jasmyn;
- Lipzen, Anna;
- Lesage-Meessen, Laurence;
- Navarro, David;
- Riley, Robert;
- Grigoriev, Igor V.
Publication type:
Article

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