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- Title
A System for Information Management in BioMedical Studies—SIMBioMS.
- Authors
Krestyaninova, Maria; Zarins, Andris; Viksna, Juris; Kurbatova, Natalja; Rucevskis, Peteris; Neogi, Sudeshna Guha; Gostev, Mike; Perheentupa, Teemu; Knuuttila, Juha; Barrett, Amy; Lappalainen, Ilkka; Rung, Johan; Podnieks, Karlis; Sarkans, Ugis; McCarthy, Mark I.; Brazma, Alvis
- Abstract
Summary: SIMBioMS is a web-based open source software system for managing data and information in biomedical studies. It provides a solution for the collection, storage, management and retrieval of information about research subjects and biomedical samples, as well as experimental data obtained using a range of high-throughput technologies, including gene expression, genotyping, proteomics and metabonomics. The system can easily be customized and has proven to be successful in several large-scale multi-site collaborative projects. It is compatible with emerging functional genomics data standards and provides data import and export in accepted standard formats. Protocols for transferring data to durable archives at the European Bioinformatics Institute have been implemented.
- Subjects
OPEN source software; MEDICAL research; INFORMATION retrieval; GENE expression; PROTEOMICS; GENOMICS; EUROPEAN Bioinformatics Institute
- Publication
Bioinformatics, 2009, Vol 25, Issue 20, p2768
- ISSN
1367-4803
- Publication type
Article
- DOI
10.1093/bioinformatics/btp420