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Detection of low copy numbers of HIV-1 proviral DNA in patient PBMCs by a high-input, sequence-capture PCR (Mega-PCR).
Published in:
Journal of Medical Virology, 2004, v. 72, n. 1, p. 1
By:
- Jürg Böni;
- Cyril Shah;
- Markus Flepp;
- Ruedi Lüthy;
- Jörg Schüpbach
Publication type:
Article
Generation of a Recombinant Gag Virus-Like-Particle Panel for the Evaluation of p24 Antigen Detection by Diagnostic HIV Tests.
Published in:
PLoS ONE, 2014, v. 9, n. 10, p. 1, doi. 10.1371/journal.pone.0111552
By:
- Vetter, Beatrice N.;
- Orlowski, Vanessa;
- Fransen, Katrien;
- Niederhauser, Christoph;
- Aubert, Vincent;
- Brandenberger, Marcel;
- Ciardo, Diana;
- Dollenmaier, Günter;
- Klimkait, Thomas;
- Regenass, Stephan;
- Schmid, Patrick;
- Schottstedt, Volkmar;
- Suter-Riniker, Franziska;
- Yerly, Sabine;
- Shah, Cyril;
- Böni, Jürg;
- Schüpbach, Jörg
Publication type:
Article
Assessing the Paradox Between Transmitted and Acquired HIV Type 1 Drug Resistance Mutations in the Swiss HIV Cohort Study From 1998 to 2012.
Published in:
Journal of Infectious Diseases, 2015, v. 212, n. 1, p. 28, doi. 10.1093/infdis/jiv012
By:
- Wan-Lin Yang;
- Kouyos, Roger;
- Scherrer, Alexandra U.;
- Böni, Jürg;
- Shah, Cyril;
- Yerly, Sabine;
- Klimkait, Thomas;
- Aubert, Vincent;
- Furrer, Hansjakob;
- Battegay, Manuel;
- Cavassini, Matthias;
- Bernasconi, Enos;
- Vernazza, Pietro;
- Held, Leonhard;
- Ledergerber, Bruno;
- Günthard, Huldrych F.
Publication type:
Article
Higher Risk of Incident Hepatitis C Virus Coinfection Among Men Who Have Sex With Men, in Whom the HIV Genetic Bottleneck at Transmission Was Wide.
Published in:
Journal of Infectious Diseases, 2014, v. 210, n. 10, p. 1555, doi. 10.1093/infdis/jiu315
By:
- Kouyos, Roger D.;
- Rauch, Andri;
- Braun, Dominique L.;
- Yang, Wan-Lin;
- Böni, Jürg;
- Yerly, Sabine;
- Klimkait, Thomas;
- Aubert, Vincent;
- Shah, Cyril;
- Kovari, Helen;
- Calmy, Alexandra;
- Cavassini, Matthias;
- Battegay, Manuel;
- Vernazza, Pietro L.;
- Bernasconi, Enos;
- Ledergerber, Bruno;
- Günthard, Huldrych F.
Publication type:
Article
The Role of Migration and Domestic Transmission in the Spread of HIV-1 Non-B Subtypes in Switzerland.
Published in:
Journal of Infectious Diseases, 2011, v. 204, n. 7, p. 1095, doi. 10.1093/infdis/jir491
By:
- von Wyl, Viktor;
- Kouyos, Roger D.;
- Yerly, Sabine;
- Böni, Jürg;
- Shah, Cyril;
- Bürgisser, Philippe;
- Klimkait, Thomas;
- Weber, Rainer;
- Hirschel, Bernard;
- Cavassini, Matthias;
- Staehelin, Cornelia;
- Battegay, Manuel;
- Vernazza, Pietro L.;
- Bernasconi, Enos;
- Ledergerber, Bruno;
- Bonhoeffer, Sebastian;
- Günthard, Huldrych F.
Publication type:
Article
Molecular Epidemiology Reveals Long-Term Changes in HIV Type 1 Subtype B Transmission in Switzerland.
Published in:
Journal of Infectious Diseases, 2010, v. 201, n. 10, p. 1488, doi. 10.1086/651951
By:
- Kouyos, Roger D.;
- von Wyl, Viktor;
- Yerly, Sabine;
- Böni, Jürg;
- Taffé, Patrick;
- Shah, Cyril;
- Bürgisser, Philippe;
- Klimkait, Thomas;
- Weber, Rainer;
- Hirschel, Bernard;
- Cavassini, Matthias;
- Furrer, Hansjakob;
- Battegay, Manuel;
- Vernazza, Pietro L.;
- Bernasconi, Enos;
- Rickenbach, Martin;
- Ledergerber, Bruno;
- Bonhoeffer, Sebastian;
- Günthard, Huldrych F.
Publication type:
Article
Prevalence of Occult Hepatitis B Virus Infection in Blood Donors with Negative ID-NAT in Switzerland.
Published in:
Transfusion Medicine & Hemotherapy, 2022, v. 49, n. 6, p. 338, doi. 10.1159/000525480
By:
- Zbinden, Andrea;
- Ries, Judith;
- Redli, Patrick M.;
- Shah, Cyril;
- Glauser, Andreas;
- Goslings, David;
- Huzly, Daniela;
- Böni, Jürg;
- Gottschalk, Jochen;
- Frey, Beat M.
Publication type:
Article
HCV Genetic Diversity Can Be Used to Infer Infection Recency and Time since Infection.
Published in:
Viruses (1999-4915), 2020, v. 12, n. 11, p. 1241, doi. 10.3390/v12111241
By:
- Carlisle, Louisa A.;
- Turk, Teja;
- Metzner, Karin J.;
- Mbunkah, Herbert A.;
- Shah, Cyril;
- Böni, Jürg;
- Huber, Michael;
- Braun, Dominique L.;
- Fehr, Jan;
- Salazar-Vizcaya, Luisa;
- Rauch, Andri;
- Yerly, Sabine;
- Nguyen, Aude;
- Cavassini, Matthias;
- Stoeckle, Marcel;
- Vernazza, Pietro;
- Bernasconi, Enos;
- Günthard, Huldrych F.;
- Kouyos, Roger D.
Publication type:
Article
A Treatment-as-Prevention Trial to Eliminate Hepatitis C Among Men Who Have Sex With Men Living With Human Immunodeficiency Virus (HIV) in the Swiss HIV Cohort Study.
Published in:
Clinical Infectious Diseases, 2021, v. 73, n. 7, p. e2194, doi. 10.1093/cid/ciaa1124
By:
- Braun, Dominique L;
- Hampel, Benjamin;
- Ledergerber, Bruno;
- Grube, Christina;
- Nguyen, Huyen;
- Künzler-Heule, Patrizia;
- Shah, Cyril;
- Salazar-Vizcaya, Luisa;
- Conen, Anna;
- Flepp, Markus;
- Stöckle, Marcel;
- Béguelin, Charles;
- Schmid, Patrick;
- Rougemont, Mathieu;
- Delaloye, Julie;
- Bernasconi, Enos;
- Nicca, Dunja;
- Böni, Jürg;
- Rauch, Andri;
- Kouyos, Roger D
Publication type:
Article
High Cure Rates With Grazoprevir-Elbasvir With or Without Ribavirin Guided by Genotypic Resistance Testing Among Human Immunodeficiency Virus/Hepatitis C Virus–coinfected Men Who Have Sex With Men.
Published in:
Clinical Infectious Diseases, 2019, v. 68, n. 4, p. 569, doi. 10.1093/cid/ciy547
By:
- Braun, Dominique L;
- Hampel, Benjamin;
- Kouyos, Roger;
- Nguyen, Huyen;
- Shah, Cyril;
- Flepp, Markus;
- Stöckle, Marcel;
- Conen, Anna;
- Béguelin, Charles;
- Künzler-Heule, Patrizia;
- Nicca, Dunja;
- Schmid, Patrick;
- Delaloye, Julie;
- Rougemont, Mathieu;
- Bernasconi, Enos;
- Rauch, Andri;
- Günthard, Huldrych F;
- Böni, Jürg;
- Fehr, Jan S;
- Study, Swiss HIV Cohort
Publication type:
Article
Treatment-Naive Individuals Are the Major Source of Transmitted HIV-1 Drug Resistance in Men Who Have Sex With Men in the Swiss HIV Cohort Study.
Published in:
Clinical Infectious Diseases, 2014, v. 58, n. 2, p. 285
By:
- Drescher, Sara M.;
- von Wyl, Viktor;
- Yang, Wan-Lin;
- Böni, Jürg;
- Yerly, Sabine;
- Shah, Cyril;
- Aubert, Vincent;
- Klimkait, Thomas;
- Taffé, Patrick;
- Furrer, Hansjakob;
- Battegay, Manuel;
- Ambrosioni, Juan;
- Cavassini, Matthias;
- Bernasconi, Enos;
- Vernazza, Pietro L.;
- Ledergerber, Bruno;
- Günthard, Huldrych F.;
- Kouyos, Roger D.
Publication type:
Article
Persistent mammalian orthoreovirus, coxsackievirus and adenovirus co-infection in a child with a primary immunodeficiency detected by metagenomic sequencing: a case report.
Published in:
2018
By:
- Lewandowska, Dagmara W.;
- Capaul, Riccarda;
- Prader, Seraina;
- Zagordi, Osvaldo;
- Geissberger, Fabienne-Desirée;
- Kügler, Martin;
- Knorr, Marcus;
- Berger, Christoph;
- Güngör, Tayfun;
- Reichenbach, Janine;
- Shah, Cyril;
- Böni, Jürg;
- Zbinden, Andrea;
- Trkola, Alexandra;
- Pachlopnik Schmid, Jana;
- Huber, Michael
Publication type:
journal article
Importance of an Early HIV Antibody Differentiation Immunoassay for Detection of Dual Infection with HIV-1 and HIV-2.
Published in:
PLoS ONE, 2016, v. 11, n. 6, p. 1, doi. 10.1371/journal.pone.0157690
By:
- Zbinden, Andrea;
- Dürig, Roland;
- Shah, Cyril;
- Böni, Jürg;
- Schüpbach, Jörg
Publication type:
Article
Clustering of HCV coinfections on HIV phylogeny indicates domestic and sexual transmission of HCV.
Published in:
2014
By:
- Kouyos, Roger D;
- Rauch, Andri;
- Böni, Jürg;
- Yerly, Sabine;
- Shah, Cyril;
- Aubert, Vincent;
- Klimkait, Thomas;
- Kovari, Helen;
- Calmy, Alexandra;
- Cavassini, Matthias;
- Battegay, Manuel;
- Vernazza, Pietro L;
- Bernasconi, Enos;
- Ledergerber, Bruno;
- Günthard, Huldrych F;
- Swiss HIV Cohort Study (SHCS)
Publication type:
Journal Article
Clustering of HCV coinfections on HIV phylogeny indicates domestic and sexual transmission of HCV.
Published in:
International Journal of Epidemiology, 2014, v. 43, n. 3, p. 887
By:
- Kouyos, Roger D;
- Rauch, Andri;
- Böni, Jürg;
- Yerly, Sabine;
- Shah, Cyril;
- Aubert, Vincent;
- Klimkait, Thomas;
- Kovari, Helen;
- Calmy, Alexandra;
- Cavassini, Matthias;
- Battegay, Manuel;
- Vernazza, Pietro L;
- Bernasconi, Enos;
- Ledergerber, Bruno;
- Günthard, Huldrych F
Publication type:
Article
Changing Trends in International Versus Domestic HCV Transmission in HIV-Positive Men Who Have Sex With Men: A Perspective for the Direct-Acting Antiviral Scale-Up Era.
Published in:
2019
By:
- Salazar-Vizcaya, Luisa;
- Kouyos, Roger D;
- Metzner, Karin J;
- Cortes, Kamila Caraballo;
- Böni, Jürg;
- Shah, Cyril;
- Fehr, Jan;
- Braun, Dominique L;
- Bernasconi, Enos;
- Mbunkah, Herbert A;
- Hoffmann, Matthias;
- Labhardt, Niklaus;
- Cavassini, Matthias;
- Rougemont, Mathieu;
- Günthard, Huldrych F;
- Keiser, Olivia;
- Rauch, Andri;
- Study, the Swiss HIV Cohort;
- Caraballo Cortes, Kamila;
- Swiss HIV Cohort Study
Publication type:
journal article
Use of reverse-transcriptase-based HIV-1 viral load assessment to confirm low viral loads in newly diagnosed patients in Switzerland.
Published in:
BMC Infectious Diseases, 2014, v. 14, n. 1, p. 1, doi. 10.1186/1471-2334-14-84
By:
- Vetter, Beatrice N.;
- Shah, Cyril;
- Huder, Jon B.;
- Böni, Jürg;
- Schüpbach, Jörg
Publication type:
Article
Use of reverse-transcriptase-based HIV-1 viral load assessment to confirm low viral loads in newly diagnosed patients in Switzerland.
Published in:
2014
By:
- Vetter, Beatrice N;
- Shah, Cyril;
- Huder, Jon B;
- Böni, Jürg;
- Schüpbach, Jörg
Publication type:
journal article
Assessing efficacy of different nucleos(t)ide backbones in NNRTI-containing regimens in the Swiss HIV Cohort Study.
Published in:
2015
By:
- Yang, Wan-Lin;
- Kouyos, Roger D;
- Scherrer, Alexandra U;
- Böni, Jürg;
- Shah, Cyril;
- Yerly, Sabine;
- Klimkait, Thomas;
- Aubert, Vincent;
- Hirzel, Cédric;
- Battegay, Manuel;
- Cavassini, Matthias;
- Bernasconi, Enos;
- Vernazza, Pietro;
- Held, Leonhard;
- Ledergerber, Bruno;
- Günthard, Huldrych F;
- Swiss HIV Cohort Study (SHCS);
- Swiss HIV Cohort Study SHCS
Publication type:
journal article
Assessing efficacy of different nucleos(t)ide backbones in NNRTI-containing regimens in the Swiss HIV Cohort Study.
Published in:
Journal of Antimicrobial Chemotherapy (JAC), 2015, v. 70, n. 12, p. 3323, doi. 10.1093/jac/dkv276
By:
- Wan-Lin Yang;
- Kouyos, Roger D.;
- Scherrer, Alexandra U.;
- Böni, Jürg;
- Shah, Cyril;
- Yerly, Sabine;
- Klimkait, Thomas;
- Aubert, Vincent;
- Hirzel, Cédric;
- Battegay, Manuel;
- Cavassini, Matthias;
- Bernasconi, Enos;
- Vernazza, Pietro;
- Held, Leonhard;
- Ledergerber, Bruno;
- Günthard, Huldrych F.
Publication type:
Article
Do we cause false positives? An experimental series on droplet or airborne SARS-CoV-2 contamination of sampling tubes during swab collection in a test center.
Published in:
Antimicrobial Resistance & Infection Control, 2021, v. 10, n. 1, p. 1, doi. 10.1186/s13756-021-00920-z
By:
- Scheier, Thomas;
- Shah, Cyril;
- Huber, Michael;
- Sax, Hugo;
- Hasse, Barbara;
- Günthard, Huldrych F.;
- Trkola, Alexandra;
- Schreiber, Peter W.
Publication type:
Article
Incidence of HIV-1 Drug Resistance Among Antiretroviral Treatment-Naive Individuals Starting Modern Therapy Combinations.
Published in:
Clinical Infectious Diseases, 2012, v. 54, n. 1, p. 131, doi. 10.1093/cid/cir728
By:
- Wyl, Viktor von;
- Yerly, Sabine;
- Böni, Jürg;
- Shah, Cyril;
- Cellerai, Cristina;
- Klimkait, Thomas;
- Battegay, Manuel;
- Bernasconi, Enos;
- Cavassini, Matthias;
- Furrer, Hansjakob;
- Hirschel, Bernard;
- Vernazza, Pietro L.;
- Ledergerber, Bruno;
- Günthard, Huldrych F.
Publication type:
Article
Ambiguous Nucleotide Calls From Populationbased Sequencing of HIV-1 are a Marker for Viral Diversity and the Age of Infection.
Published in:
Clinical Infectious Diseases, 2011, v. 52, n. 4, p. 532, doi. 10.1093/cid/ciq164
By:
- Kouyos, Roger D.;
- von Wyl, Viktor;
- Yerly, Sabine;
- Böni, Jürg;
- Rieder, Philip;
- Joos, Beda;
- Taffé, Patrick;
- Shah, Cyril;
- Bürgisser, Philippe;
- Klimkait, Thomas;
- Weber, Rainer;
- Hirschel, Bernard;
- Cavassini, Matthias;
- Rauch, Andri;
- Battegay, Manuel;
- Vernazza, Pietro L.;
- Bernasconi, Enos;
- Ledergerber, Bruno;
- Bonhoeffer, Sebastian;
- Günthard, Huldrych F.
Publication type:
Article
HIV-1 Superinfection in an HIV-2-Infected Woman with Subsequent Control of HIV-1 Plasma Viremia.
Published in:
Clinical Infectious Diseases, 2009, v. 48, n. 11, p. e117, doi. 10.1086/598987
By:
- Günthard, Huldrych F.;
- Huber, Milo;
- Kuster, Herbert;
- Shah, Cyril;
- Schüpbach, Jörg;
- Trkola, Alexandra;
- Böni, Jürg
Publication type:
Article
Comparison of HIV-1 viral load based on RNA or reverse transcriptase activity in patients with suspected viral load underestimation.
Published in:
2012
By:
- Vetter, Beatrice N.;
- Shah, Cyril;
- Böni, Jürg;
- Schüpbach, Jörg
Publication type:
Abstract

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