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The HADDOCK2.4 web server for integrative modeling of biomolecular complexes.
- Published in:
- Nature Protocols, 2024, v. 19, n. 11, p. 3219, doi. 10.1038/s41596-024-01011-0
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- Article
Erratum To: A comprehensive framework of E2–RING E3 interactions of the human ubiquitin–proteasome system.
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- 2009
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- Correction Notice
Towards the accurate modelling of antibody−antigen complexes from sequence using machine learning and information-driven docking.
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- Bioinformatics, 2024, v. 40, n. 10, p. 1, doi. 10.1093/bioinformatics/btae583
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- Article
Adrenergic Modulation With Photochromic Ligands.
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- Angewandte Chemie, 2021, v. 133, n. 7, p. 3669, doi. 10.1002/ange.202010553
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- Article
Frontispiz: Supramolekulare Organisation und funktionale Auswirkungen von Ballungen von K<sup>+</sup>-Kanälen in Membranen.
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- Angewandte Chemie, 2017, v. 129, n. 43, p. n/a, doi. 10.1002/ange.201705723
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- Publication type:
- Article
Supramolekulare Organisation und funktionale Auswirkungen von Ballungen von K<sup>+</sup>-Kanälen in Membranen.
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- Angewandte Chemie, 2017, v. 129, n. 43, p. 13404, doi. 10.1002/ange.201705723
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- Publication type:
- Article
Shapley values reveal the drivers of soil organic carbon stock prediction.
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- SOIL, 2023, v. 9, n. 1, p. 21, doi. 10.5194/soil-9-21-2023
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- Publication type:
- Article
Multi-source data integration for soil mapping using deep learning.
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- SOIL, 2019, v. 5, n. 1, p. 107, doi. 10.5194/soil-5-107-2019
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- Article
PPARγ lipodystrophy mutants reveal intermolecular interactions required for enhancer activation.
- Published in:
- Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-34766-9
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- Publication type:
- Article
Phosphorylation disrupts long-distance electron transport in cytochrome c.
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- Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-34809-1
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- Article
Frontispiece: Supramolecular Organization and Functional Implications of K<sup>+</sup> Channel Clusters in Membranes.
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- Angewandte Chemie International Edition, 2017, v. 56, n. 43, p. n/a, doi. 10.1002/anie.201784361
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- Publication type:
- Article
Supramolecular Organization and Functional Implications of K<sup>+</sup> Channel Clusters in Membranes.
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- Angewandte Chemie International Edition, 2017, v. 56, n. 43, p. 13222, doi. 10.1002/anie.201705723
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- Publication type:
- Article
Reversible Photocontrol of Dopaminergic Transmission in Wild-Type Animals.
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- International Journal of Molecular Sciences, 2022, v. 23, n. 17, p. 10114, doi. 10.3390/ijms231710114
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- Publication type:
- Article
Mapping the Contact Sites of the Escherichia coli Division-Initiating Proteins FtsZ and ZapA by BAMG Cross-Linking and Site-Directed Mutagenesis.
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- International Journal of Molecular Sciences, 2018, v. 19, n. 10, p. 2928, doi. 10.3390/ijms19102928
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- Publication type:
- Article
A Machine Learning Approach for Hot-Spot Detection at Protein-Protein Interfaces.
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- International Journal of Molecular Sciences, 2016, v. 17, n. 8, p. 1215, doi. 10.3390/ijms17081215
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- Article
Novel Insights into Guide RNA 5'-Nucleoside/Tide Binding by Human Argonaute 2.
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- International Journal of Molecular Sciences, 2016, v. 17, n. 1, p. 22, doi. 10.3390/ijms17010022
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- Publication type:
- Article
MTMDAT-HADDOCK: High-throughput, protein complex structure modeling based on limited proteolysis and mass spectrometry.
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- BMC Structural Biology, 2012, v. 12, n. 1, p. 29, doi. 10.1186/1472-6807-12-29
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- Article
Mapping soil organic carbon fractions for Australia, their stocks and uncertainty.
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- Biogeosciences Discussions, 2022, p. 1, doi. 10.5194/bg-2022-207
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- Publication type:
- Article
Subunit-Specific Photocontrol of Glycine Receptors by Azobenzene-Nitrazepam Photoswitcher.
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- eNeuro, 2021, v. 8, n. 1, p. 1, doi. 10.1523/ENEURO.0294-20.2020
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- Article
Contacts-based prediction of binding affinity in protein--protein complexes.
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- eLife, 2015, p. 1, doi. 10.7554/eLife.07454
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- Article
LOVE, JUSTICE, AND SOCIAL ESCHATOLOGY.
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- Heythrop Journal, 2007, v. 48, n. 6, p. 972, doi. 10.1111/j.1468-2265.2007.00352.x
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- Article
Pushing the limits of what is achievable in protein–DNA docking: benchmarking HADDOCK’s performance.
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- Nucleic Acids Research, 2010, v. 38, n. 17, p. 5634, doi. 10.1093/nar/gkq222
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- Article
3D-DART: a DNA structure modelling server.
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- Nucleic Acids Research, 2009, v. 37, n. suppl_2, p. W235, doi. 10.1093/nar/gkp287
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- Article
A protein–DNA docking benchmark.
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- Nucleic Acids Research, 2008, v. 36, n. 14, p. e88, doi. 10.1093/nar/gkn386
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- Article
DeepRank: a deep learning framework for data mining 3D protein-protein interfaces.
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- Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-27396-0
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- Article
Study Design in Osteoporosis: A European Perspective.
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- Journal of Bone & Mineral Research, 2003, v. 18, n. 6, p. 1133, doi. 10.1359/jbmr.2003.18.6.1133
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- Article
Probing a cell-embedded megadalton protein complex by DNP-supported solid-state NMR.
- Published in:
- Nature Methods, 2015, v. 12, n. 7, p. 649, doi. 10.1038/nmeth.3406
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- Article
Data-driven docking for the study of biomolecular complexes.
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- FEBS Journal, 2005, v. 272, n. 2, p. 293, doi. 10.1111/j.1742-4658.2004.04473.x
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- Article
Dynamic binding mode of a Synaptotagmin-1-SNARE complex in solution.
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- Nature Structural & Molecular Biology, 2015, v. 22, n. 7, p. 555, doi. 10.1038/nsmb.3035
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- Article
The nisin-lipid II complex reveals a pyrophosphate cage that provides a blueprint for novel antibiotics.
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- Nature Structural & Molecular Biology, 2004, v. 11, n. 10, p. 963, doi. 10.1038/nsmb830
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- Article
DeepRank-GNN: a graph neural network framework to learn patterns in protein–protein interfaces.
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- Bioinformatics, 2023, v. 39, n. 1, p. 1, doi. 10.1093/bioinformatics/btac759
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- Article
Using machine‐learning‐driven approaches to boost hot‐spot's knowledge.
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- WIREs: Computational Molecular Science, 2022, v. 12, n. 5, p. 1, doi. 10.1002/wcms.1602
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- Article
Finding the ΔΔG spot: Are predictors of binding affinity changes upon mutations in protein–protein interactions ready for it?
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- WIREs: Computational Molecular Science, 2019, v. 9, n. 5, p. N.PAG, doi. 10.1002/wcms.1410
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- Article
A Unified Conformational Selection and Induced Fit Approach to Protein-Peptide Docking.
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- PLoS ONE, 2013, v. 8, n. 3, p. 1, doi. 10.1371/journal.pone.0058769
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- Article
Antimicrobial and Efflux Pump Inhibitory Activity of Caffeoylquinic Acids from Artemisia absinthium against Gram-Positive Pathogenic Bacteria.
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- PLoS ONE, 2011, v. 6, n. 4, p. 1, doi. 10.1371/journal.pone.0018127
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- Article
CPORT: A Consensus Interface Predictor and Its Performance in Prediction-Driven Docking with HADDOCK.
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- PLoS ONE, 2011, v. 6, n. 3, p. 1, doi. 10.1371/journal.pone.0017695
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- Article
Understanding the Role of the Josephin Domain in the PolyUb Binding and Cleavage Properties of Ataxin-3.
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- PLoS ONE, 2010, v. 5, n. 8, p. 1, doi. 10.1371/journal.pone.0012430
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- Article
Non-interacting surface solvation and dynamics in protein-protein interactions.
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- Proteins, 2015, v. 83, n. 3, p. 445, doi. 10.1002/prot.24741
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- Article
Blind prediction of interfacial water positions in CAPRI.
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- Proteins, 2014, v. 82, n. 4, p. 620, doi. 10.1002/prot.24439
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- Article
Defining the limits of homology modeling in information-driven protein docking.
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- Proteins, 2013, v. 81, n. 12, p. 2119, doi. 10.1002/prot.24382
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- Article
Community-wide evaluation of methods for predicting the effect of mutations on protein-protein interactions.
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- Proteins, 2013, v. 81, n. 11, p. 1980, doi. 10.1002/prot.24356
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- Article
Solvated protein-protein docking using Kyte-Doolittle-based water preferences.
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- Proteins, 2013, v. 81, n. 3, p. 510, doi. 10.1002/prot.24210
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- Article
Clustering biomolecular complexes by residue contacts similarity.
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- Proteins, 2012, v. 80, n. 7, p. 1810, doi. 10.1002/prot.24078
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- Article
Quantitative use of chemical shifts for the modeling of protein complexes.
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- Proteins, 2011, v. 79, n. 9, p. 2662, doi. 10.1002/prot.23090
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- Article
Strengths and weaknesses of data-driven docking in critical assessment of prediction of interactions.
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- Proteins, 2010, v. 78, n. 15, p. 3242, doi. 10.1002/prot.22814
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- Publication type:
- Article
Insights into the DNA cleavage mechanism of human LINE-1 retrotransposon endonuclease.
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- Proteins, 2009, v. 74, n. 4, p. 917, doi. 10.1002/prot.22201
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- Publication type:
- Article
Deciphering the role of the electrostatic interactions in the α-tropomyosin head-to-tail complex.
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- Proteins, 2008, v. 73, n. 4, p. 902, doi. 10.1002/prot.22116
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- Publication type:
- Article
HADDOCK versus HADDOCK: New features and performance of HADDOCK2.0 on the CAPRI targets.
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- Proteins, 2007, v. 69, n. 4, p. 726, doi. 10.1002/prot.21723
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- Article
NMR-based modeling and binding studies of a ternary complex between chicken liver bile acid binding protein and bile acids.
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- Proteins, 2007, v. 69, n. 1, p. 177, doi. 10.1002/prot.21517
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- Article
Refinement of protein structures in explicit solvent.
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- Proteins, 2003, v. 50, n. 3, p. 496, doi. 10.1002/prot.10299
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- Publication type:
- Article