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- Title
phyloSkeleton: taxon selection, data retrieval and marker identification for phylogenomics.
- Authors
Guy, Lionel
- Abstract
Summary: With the wealth of available genome sequences, a difficult and tedious part of inferring phylogenomic trees is now to select genomes with an appropriate taxon density in the different parts of the tree. The package described here offers tools to easily select the most representative organisms, following a set of simple rules based on taxonomy and assembly quality, to retrieve the genomes from public databases (NCBI, JGI), to annotate them if necessary, to identify given markers in these, and to prepare files for multiple sequence alignment.
- Subjects
GENOMES; NUCLEOTIDE sequencing; DNA analysis; NUCLEOTIDE sequence; SEQUENCE alignment
- Publication
Bioinformatics, 2017, Vol 33, Issue 8, p1230
- ISSN
1367-4803
- Publication type
Article
- DOI
10.1093/bioinformatics/btw824