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A scalable, open-source implementation of a large-scale mechanistic model for single cell proliferation and death signaling.
- Published in:
- Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-31138-1
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- Article
Maximizing capture of gene co-expression relationships through pre-clustering of input expression samples: an Arabidopsis case study.
- Published in:
- BMC Systems Biology, 2013, v. 7, n. 1, p. 1, doi. 10.1186/1752-0509-7-44
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- Article
Paracrine Regulation of Matrix Metalloproteinase Expression in the Normal Human Endometrium.
- Published in:
- Gynecologic & Obstetric Investigation, 1999, v. 48, p. 2, doi. 10.1159/000052863
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- Publication type:
- Article
Meta-analysis of Polyploid Cotton QTL Shows Unequal Contributions of Subgenomes to a Complex Network of Genes and Gene Clusters Implicated in Lint Fiber Development.
- Published in:
- Genetics, 2007, v. 176, n. 4, p. 2577, doi. 10.1534/genetics.107.074518
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- Article
Low X/Y divergence in four pairs of papaya sex-linked genes.
- Published in:
- Plant Journal, 2008, v. 53, n. 1, p. 124, doi. 10.1111/j.1365-313X.2007.03329.x
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- Publication type:
- Article
Conserved Non-Coding Regulatory Signatures in Arabidopsis Co-Expressed Gene Modules.
- Published in:
- PLoS ONE, 2012, v. 7, n. 9, p. 1, doi. 10.1371/journal.pone.0045041
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- Publication type:
- Article
Modes of Gene Duplication Contribute Differently to Genetic Novelty and Redundancy, but Show Parallels across Divergent Angiosperms.
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- PLoS ONE, 2011, v. 6, n. 12, p. 1, doi. 10.1371/journal.pone.0028150
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- Article
Moving Just Enough Deep Sequencing Data to Get the Job Done.
- Published in:
- Bioinformatics & Biology Insights, 2019, n. 13, p. N.PAG, doi. 10.1177/1177932219856359
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- Publication type:
- Article
Moving Just Enough Deep Sequencing Data to Get the Job Done.
- Published in:
- Bioinformatics & Biology Insights, 2019, v. 13, p. N.PAG, doi. 10.1177/1177932219856359
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- Publication type:
- Article
Tripal and Galaxy: supporting reproducible scientific workflows for community biological databases.
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- Database: The Journal of Biological Databases & Curation, 2020, v. 2020, p. 1, doi. 10.1093/database/baaa032
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- Publication type:
- Article
Tripal v3: an ontology-based toolkit for construction of FAIR biological community databases.
- Published in:
- Database: The Journal of Biological Databases & Curation, 2019, v. 2019, p. N.PAG, doi. 10.1093/database/baz077
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- Publication type:
- Article
The Sorghum bicolor genome and the diversification of grasses.
- Published in:
- Nature, 2009, v. 457, n. 7229, p. 551, doi. 10.1038/nature07723
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- Publication type:
- Article
Uncovering biomarker genes with enriched classification potential from Hallmark gene sets.
- Published in:
- Scientific Reports, 2019, v. 9, n. 1, p. N.PAG, doi. 10.1038/s41598-019-46059-1
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- Publication type:
- Article
NetExtractor: Extracting a Cerebellar Tissue Gene Regulatory Network Using Differentially Expressed High Mutual Information Binary RNA Profiles.
- Published in:
- G3: Genes | Genomes | Genetics, 2020, v. 10, n. 9, p. 1, doi. 10.1534/g3.120.401067
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- Publication type:
- Article
RNA‐seq analyses of Arabidopsis thaliana seedlings after exposure to blue‐light phototropic stimuli in microgravity.
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- American Journal of Botany, 2019, v. 106, n. 11, p. 1466, doi. 10.1002/ajb2.1384
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- Publication type:
- Article
Identification of bioconversion quantitative trait loci in the interspecific cross Sorghum bicolor × Sorghum propinquum.
- Published in:
- Theoretical & Applied Genetics, 2013, v. 126, n. 9, p. 2367, doi. 10.1007/s00122-013-2141-6
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- Article
Addressing noise in co-expression network construction.
- Published in:
- Briefings in Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1093/bib/bbab495
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- Publication type:
- Article
Exploration into biomarker potential of region-specific brain gene co-expression networks.
- Published in:
- Scientific Reports, 2020, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41598-020-73611-1
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- Publication type:
- Article
Large-Scale Gene Relocations following an Ancient Genome Triplication Associated with the Diversification of Core Eudicots.
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- PLoS ONE, 2016, v. 11, n. 5, p. 1, doi. 10.1371/journal.pone.0155637
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- Article
Gene Coexpression Network Alignment and Conservation of Gene Modules between Two Grass Species: Maize and Rice.
- Published in:
- Plant Physiology, 2011, v. 156, n. 3, p. 1244, doi. 10.1104/pp.111.173047
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- Article
The Association of Multiple Interacting Genes with Specific Phenotypes in Rice Using Gene Coexpression Networks.
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- Plant Physiology, 2010, v. 154, n. 1, p. 13, doi. 10.1104/pp.110.159459
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- Publication type:
- Article
Simulating the restoration of normal gene expression from different thyroid cancer stages using deep learning.
- Published in:
- 2022
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- Publication type:
- journal article
A comparative assessment of the utility of PCR-based marker systems in pearl millet.
- Published in:
- Euphytica, 2010, v. 174, n. 2, p. 253, doi. 10.1007/s10681-010-0148-5
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- Publication type:
- Article
Computational speed-up of large-scale, single-cell model simulations via a fully integrated SBML-based format.
- Published in:
- Bioinformatics Advances, 2023, v. 3, n. 1, p. 1, doi. 10.1093/bioadv/vbad039
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- Publication type:
- Article
Ergot alkaloid exposure during gestation alters: 3. Fetal growth, muscle fiber development, and miRNA transcriptome 1.
- Published in:
- Journal of Animal Science, 2019, v. 97, n. 7, p. 3153, doi. 10.1093/jas/skz153
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- Publication type:
- Article
Linking Binary Gene Relationships to Drivers of Renal Cell Carcinoma Reveals Convergent Function in Alternate Tumor Progression Paths.
- Published in:
- Scientific Reports, 2019, v. 9, n. 1, p. 1, doi. 10.1038/s41598-019-39875-y
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- Publication type:
- Article
Evidence of function for conserved noncoding sequences in Arabidopsis thaliana.
- Published in:
- New Phytologist, 2012, v. 193, n. 1, p. 241, doi. 10.1111/j.1469-8137.2011.03916.x
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- Publication type:
- Article
Novel nuclear intron-spanning primers for Arecaceae evolutionary biology.
- Published in:
- Molecular Ecology Resources, 2008, v. 8, n. 1, p. 211, doi. 10.1111/j.1471-8286.2007.01928.x
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- Publication type:
- Article
EdgeScaping: Mapping the spatial distribution of pairwise gene expression intensities.
- Published in:
- PLoS ONE, 2019, v. 14, n. 8, p. 1, doi. 10.1371/journal.pone.0220279
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- Publication type:
- Article
Construction of physical maps for the sex-specific regions of papaya sex chromosomes.
- Published in:
- BMC Genomics, 2012, v. 13, n. 1, p. 176, doi. 10.1186/1471-2164-13-176
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- Publication type:
- Article
Assessing pooled BAC and whole genome shotgun strategies for assembly of complex genomes.
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- BMC Genomics, 2011, v. 12, p. 1, doi. 10.1186/1471-2164-12-194
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- Publication type:
- Article
Assessing pooled BAC and whole genome shotgun strategies for assembly of complex genomes.
- Published in:
- BMC Genomics, 2011, v. 12, n. 1, p. 194, doi. 10.1186/1471-2164-12-194
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- Publication type:
- Article
GEMmaker: process massive RNA-seq datasets on heterogeneous computational infrastructure.
- Published in:
- BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-04629-7
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- Publication type:
- Article
Cancer cell redirection biomarker discovery using a mutual information approach.
- Published in:
- PLoS ONE, 2017, v. 12, n. 6, p. 1, doi. 10.1371/journal.pone.0179265
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- Publication type:
- Article
Negotiated Sharing of Pandemic Data, Models, and Resources.
- Published in:
- Negotiation Journal, 2020, v. 36, n. 4, p. 497, doi. 10.1111/nejo.12340
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- Publication type:
- Article
Negotiated Sharing of Pandemic Data, Models, and Resources.
- Published in:
- Negotiation Journal, 2020, v. 36, n. 4, p. 497, doi. 10.1111/nejo.12340
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- Publication type:
- Article