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Author Correction: Maternal whole blood cell miRNA-340 is elevated in gestational diabetes and inversely regulated by glucose and insulin.
Published in:
2022
By:
- Stirm, Laura;
- Huypens, Peter;
- Sass, Steffen;
- Batra, Richa;
- Fritsche, Louise;
- Brucker, Sara;
- Abele, Harald;
- Hennige, Anita M.;
- Theis, Fabian;
- Beckers, Johannes;
- Hrabě de Angelis, Martin;
- Fritsche, Andreas;
- Häring, Hans-Ulrich;
- Staiger, Harald
Publication type:
Correction Notice
5-azacytidine inhibits nonsense-mediated decay in a MYC-dependent fashion.
Published in:
EMBO Molecular Medicine, 2014, v. 6, n. 12, p. 1593, doi. 10.15252/emmm.201404461
By:
- Bhuvanagiri, Madhuri;
- Lewis, Joe;
- Putzker, Kerstin;
- Becker, Jonas P;
- Leicht, Stefan;
- Krijgsveld, Jeroen;
- Batra, Richa;
- Turnwald, Brad;
- Jovanovic, Bogdan;
- Hauer, Christian;
- Sieber, Jana;
- Hentze, Matthias W;
- Kulozik, Andreas E
Publication type:
Article
KeyPathwayMiner 4.0: condition-specific pathway analysis by combining multiple omics studies and networks with Cytoscape.
Published in:
BMC Systems Biology, 2014, v. 8, n. 1, p. 1, doi. 10.1186/s12918-014-0099-x
By:
- Alcaraz, Nicolas;
- Pauling, Josch;
- Batra, Richa;
- Barbosa, Eudes;
- Junge, Alexander;
- Christensen, Anne G. L.;
- Azevedo, Vasco;
- Ditzel, Henrik J.;
- Baumbach, Jan
Publication type:
Article
Metabolomics profiling reveals distinct, sex‐specific signatures in serum and brain metabolomes in mouse models of Alzheimer's disease.
Published in:
Alzheimer's & Dementia: The Journal of the Alzheimer's Association, 2024, v. 20, n. 6, p. 3987, doi. 10.1002/alz.13851
By:
- Pandey, Ravi S.;
- Arnold, Mattias;
- Batra, Richa;
- Krumsiek, Jan;
- Kotredes, Kevin P.;
- Garceau, Dylan;
- Williams, Harriet;
- Sasner, Michael;
- Howell, Gareth R.;
- Kaddurah‐Daouk, Rima;
- Carter, Gregory W.
Publication type:
Article
A modified Mediterranean‐ketogenic diet favorably modulates the metabolic profiles of mild cognitively impaired individuals.
Published in:
Alzheimer's & Dementia: The Journal of the Alzheimer's Association, 2023, v. 19, p. 1, doi. 10.1002/alz.079848
By:
- Batra, Richa;
- Huynh, Kevin;
- Schweickart, Annalise;
- Neth, Bryan J.;
- Arnold, Matthias;
- Kastenmuller, Gabi;
- Meikle, Peter J;
- Craft, Suzanne;
- Krumsiek, Jan;
- Kaddurah‐Daouk, Rima F.
Publication type:
Article
Pseudo‐temporal models of Alzheimer's Disease progression across brain‐derived transcriptomics, proteomics, and metabolomics.
Published in:
Alzheimer's & Dementia: The Journal of the Alzheimer's Association, 2023, v. 19, p. 1, doi. 10.1002/alz.080320
By:
- Heath, Laura M;
- Batra, Richa;
- Cary, Gregory A.;
- Wiley, Jesse C;
- Poehlman, William L.;
- Linden, Abby Vander;
- Krumsiek, Jan;
- Arnold, Matthias;
- Kaddurah‐Daouk, Rima F.;
- Carter, Gregory W;
- Greenwood, Anna K
Publication type:
Article
Pseudo‐temporal models of Alzheimer's Disease progression across brain‐derived transcriptomics, proteomics, and metabolomics.
Published in:
Alzheimer's & Dementia: The Journal of the Alzheimer's Association, 2023, v. 19, p. 1, doi. 10.1002/alz.080320
By:
- Heath, Laura M;
- Batra, Richa;
- Cary, Gregory A.;
- Wiley, Jesse C;
- Poehlman, William L.;
- Linden, Abby Vander;
- Krumsiek, Jan;
- Arnold, Matthias;
- Kaddurah‐Daouk, Rima F.;
- Carter, Gregory W;
- Greenwood, Anna K
Publication type:
Article
Multi‐omics characterization of brain‐based pseudotime estimates for Alzheimer's disease progression.
Published in:
Alzheimer's & Dementia: The Journal of the Alzheimer's Association, 2023, v. 19, p. 1, doi. 10.1002/alz.065437
By:
- Wörheide, Maria A.;
- Batra, Richa;
- Krumsiek, Jan;
- Kaddurah‐Daouk, Rima F.;
- Kastenmuller, Gabi;
- Arnold, Matthias
Publication type:
Article
The landscape of metabolic brain alterations in Alzheimer's disease.
Published in:
Alzheimer's & Dementia: The Journal of the Alzheimer's Association, 2023, v. 19, n. 3, p. 980, doi. 10.1002/alz.12714
By:
- Batra, Richa;
- Arnold, Matthias;
- Wörheide, Maria A.;
- Allen, Mariet;
- Wang, Xue;
- Blach, Colette;
- Levey, Allan I.;
- Seyfried, Nicholas T.;
- Ertekin‐Taner, Nilüfer;
- Bennett, David A.;
- Kastenmüller, Gabi;
- Kaddurah‐Daouk, Rima F.;
- Krumsiek, Jan
Publication type:
Article
Interplay of the human exposome, metabolome and gut microbiome in dementia and major depression.
Published in:
Alzheimer's & Dementia: The Journal of the Alzheimer's Association, 2022, v. 18, n. 4, p. 1, doi. 10.1002/alz.067261
By:
- van Duijn, Cornelia M;
- Amin, Najaf;
- Liu, Jun;
- Bonnechere, Bruno;
- MahmoudianDehkordi, Siamak;
- Arnold, Matthias;
- Batra, Richa;
- Chiou, Yu‐Jie;
- Fernandes, Marco;
- Ikram, M. Arfan;
- Kraaij, Robert;
- Krumsiek, Jan;
- Newby, Danielle;
- Nho, Kwangsik;
- Radjabzadeh, Djawad;
- Saykin, Andrew J.;
- Shi, Liu;
- Sproviero, William;
- Winchester, Laura M;
- Yang, Yang
Publication type:
Article
Brain region‐specific metabolic signatures of Alzheimer's disease.
Published in:
Alzheimer's & Dementia: The Journal of the Alzheimer's Association, 2022, v. 18, n. 3, p. 1, doi. 10.1002/alz.067879
By:
- Batra, Richa;
- Krumsiek, Jan;
- Wang, Xue;
- Allen, Mariet;
- Wörheide, Maria A.;
- Blach, Colette;
- Bennett, David A;
- Kastenmüller, Gabi;
- Arnold, Matthias;
- Ertekin‐Taner, Nilufer;
- Kaddurah‐Daouk, Rima
Publication type:
Article
Mapping the human brain metabolome and influences of gut microbiome.
Published in:
Alzheimer's & Dementia: The Journal of the Alzheimer's Association, 2021, v. 17, p. 1, doi. 10.1002/alz.056270
By:
- Batra, Richa;
- Heinken, Almut;
- Karu, Naama;
- Arnold, Matthias;
- Kastenmüller, Gabi;
- Hankemeier, Thomas;
- Bennett, David A.;
- Knight, Rob;
- Krumsiek, Jan;
- Thiele, Ines;
- Kaddurah‐Daouk, Rima F.
Publication type:
Article
The metabolic landscape of brain alterations in Alzheimer's disease.
Published in:
Alzheimer's & Dementia: The Journal of the Alzheimer's Association, 2021, v. 17, n. 3, p. 1, doi. 10.1002/alz.054793
By:
- Batra, Richa;
- Arnold, Matthias;
- Kastenmüller, Gabi;
- Allen, Mariet;
- Wang, Xue;
- Bennett, David A.;
- Ertekin‐Taner, Nilüfer;
- Kaddurah‐Daouk, Rima F.;
- Krumsiek, Jan
Publication type:
Article
Interplay of Metabolome and Gut Microbiome in Individuals With Major Depressive Disorder vs Control Individuals.
Published in:
JAMA Psychiatry, 2023, v. 80, n. 6, p. 597, doi. 10.1001/jamapsychiatry.2023.0685
By:
- Amin, Najaf;
- Liu, Jun;
- Bonnechere, Bruno;
- MahmoudianDehkordi, Siamak;
- Arnold, Matthias;
- Batra, Richa;
- Chiou, Yu-Jie;
- Fernandes, Marco;
- Ikram, M. Arfan;
- Kraaij, Robert;
- Krumsiek, Jan;
- Newby, Danielle;
- Nho, Kwangsik;
- Radjabzadeh, Djawad;
- Saykin, Andrew J.;
- Shi, Liu;
- Sproviero, William;
- Winchester, Laura;
- Yang, Yang;
- Nevado-Holgado, Alejo J.
Publication type:
Article
De novo pathway-based biomarker identification.
Published in:
Nucleic Acids Research, 2017, v. 45, n. 16, p. e151, doi. 10.1093/nar/gkx642
By:
- Alcaraz, Nicolas;
- List, Markus;
- Batra, Richa;
- Vandin, Fabio;
- Ditzel, Henrik J.;
- Baumbach, Jan
Publication type:
Article
longmixr: a tool for robust clustering of high-dimensional cross-sectional and longitudinal variables of mixed data types.
Published in:
Bioinformatics, 2024, v. 40, n. 4, p. 1, doi. 10.1093/bioinformatics/btae137
By:
- Hagenberg, Jonas;
- Budde, Monika;
- Pandeva, Teodora;
- Kondofersky, Ivan;
- Schaupp, Sabrina K;
- Theis, Fabian J;
- Schulze, Thomas G;
- Müller, Nikola S;
- Heilbronner, Urs;
- Batra, Richa;
- Knauer-Arloth, Janine
Publication type:
Article
maplet: an extensible R toolbox for modular and reproducible metabolomics pipelines.
Published in:
Bioinformatics, 2022, v. 38, n. 4, p. 1168, doi. 10.1093/bioinformatics/btab741
By:
- Chetnik, Kelsey;
- Benedetti, Elisa;
- Gomari, Daniel P;
- Schweickart, Annalise;
- Batra, Richa;
- Buyukozkan, Mustafa;
- Wang, Zeyu;
- Arnold, Matthias;
- Zierer, Jonas;
- Suhre, Karsten;
- Krumsiek, Jan
Publication type:
Article
Time-Lapse Imaging of Neuroblastoma Cells to Determine Cell Fate upon Gene Knockdown.
Published in:
PLoS ONE, 2012, v. 7, n. 12, p. 1, doi. 10.1371/journal.pone.0050988
By:
- Batra, Richa;
- Harder, Nathalie;
- Gogolin, Sina;
- Diessl, Nicolle;
- Soons, Zita;
- Jäger-Schmidt, Christina;
- Lawerenz, Christian;
- Eils, Roland;
- Rohr, Karl;
- Westermann, Frank;
- König, Rainer
Publication type:
Article
Urine-based multi-omic comparative analysis of COVID-19 and bacterial sepsis-induced ARDS.
Published in:
Molecular Medicine, 2023, v. 29, n. 1, p. 1, doi. 10.1186/s10020-023-00609-6
By:
- Batra, Richa;
- Uni, Rie;
- Akchurin, Oleh M.;
- Alvarez-Mulett, Sergio;
- Gómez-Escobar, Luis G.;
- Patino, Edwin;
- Hoffman, Katherine L.;
- Simmons, Will;
- Whalen, William;
- Chetnik, Kelsey;
- Buyukozkan, Mustafa;
- Benedetti, Elisa;
- Suhre, Karsten;
- Schenck, Edward;
- Cho, Soo Jung;
- Choi, Augustine M. K.;
- Schmidt, Frank;
- Choi, Mary E.;
- Krumsiek, Jan
Publication type:
Article
Large-scale tracking and classification for automatic analysis of cell migration and proliferation, and experimental optimization of high-throughput screens of neuroblastoma cells.
Published in:
Cytometry. Part A, 2015, v. 87, n. 6, p. 524, doi. 10.1002/cyto.a.22632
By:
- Harder, Nathalie;
- Batra, Richa;
- Diessl, Nicolle;
- Gogolin, Sina;
- Eils, Roland;
- Westermann, Frank;
- König, Rainer;
- Rohr, Karl
Publication type:
Article
Elucidation of Altered Pathways in Tumor-Initiating Cells of Triple-Negative Breast Cancer: A Useful Cell Model System for Drug Screening.
Published in:
Stem Cells, 2017, v. 35, n. 8, p. 1898, doi. 10.1002/stem.2654
By:
- Christensen, Anne G.;
- Ehmsen, Sidse;
- Terp, Mikkel G.;
- Batra, Richa;
- Alcaraz, Nicolas;
- Baumbach, Jan;
- Noer, Julie B.;
- Moreira, José;
- Leth-Larsen, Rikke;
- Larsen, Martin R.;
- Ditzel, Henrik J.
Publication type:
Article
AutoFocus: a hierarchical framework to explore multi-omic disease associations spanning multiple scales of biomolecular interaction.
Published in:
Communications Biology, 2024, p. 1, doi. 10.1038/s42003-024-06724-2
By:
- Schweickart, Annalise;
- Chetnik, Kelsey;
- Batra, Richa;
- Kaddurah-Daouk, Rima;
- Suhre, Karsten;
- Halama, Anna;
- Krumsiek, Jan
Publication type:
Article
On the performance of de novo pathway enrichment.
Published in:
NPJ Systems Biology & Applications, 2017, v. 3, n. 1, p. N.PAG, doi. 10.1038/s41540-017-0007-2
By:
- Batra, Richa;
- Alcaraz, Nicolas;
- Gitzhofer, Kevin;
- Pauling, Josch;
- Ditzel, Henrik J.;
- Hellmuth, Marc;
- Baumbach, Jan;
- List, Markus
Publication type:
Article
Editorial: Computational systems biomedicine.
Published in:
Frontiers in Genetics, 2022, v. 13, p. 01, doi. 10.3389/fgene.2022.1047760
By:
- Batra, Richa;
- Baloni, Priyanka;
- Alcaraz, Nicolas;
- Hauschild, Anne-Christin;
- Cervera, Alejandra
Publication type:
Article
Elucidation of epithelial-mesenchymal transitionrelated pathways in a triple-negative breast cancer cell line model by multi-omics interactome analysis.
Published in:
Integrative Biology, 2014, v. 6, n. 11, p. 1058, doi. 10.1039/c4ib00137k
By:
- Pauling, Josch K.;
- Christensen, Anne G.;
- Batra, Richa;
- Alcaraz, Nicolas;
- Barbosa, Eudes;
- Larsen, Martin R.;
- Beck, Hans C.;
- Leth-Larsen, Rikke;
- Azevedo, Vasco;
- Ditzel, Henrik J.;
- Baumbach, Jan
Publication type:
Article
Maternal whole blood cell miRNA-340 is elevated in gestational diabetes and inversely regulated by glucose and insulin.
Published in:
Scientific Reports, 2018, v. 8, n. 1, p. 1, doi. 10.1038/s41598-018-19200-9
By:
- Stirm, Laura;
- Huypens, Peter;
- Sass, Steffen;
- Batra, Richa;
- Fritsche, Louise;
- Brucker, Sara;
- Abele, Harald;
- Hennige, Anita M.;
- Theis, Fabian;
- Beckers, Johannes;
- Hrabě de Angelis, Martin;
- Fritsche, Andreas;
- Häring, Hans-Ulrich;
- Staiger, Harald
Publication type:
Article
Secretome profiling reveals acute changes in oxidative stress, brain homeostasis, and coagulation following short-duration spaceflight.
Published in:
Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-48841-w
By:
- Houerbi, Nadia;
- Kim, JangKeun;
- Overbey, Eliah G.;
- Batra, Richa;
- Schweickart, Annalise;
- Patras, Laura;
- Lucotti, Serena;
- Ryon, Krista A.;
- Najjar, Deena;
- Meydan, Cem;
- Damle, Namita;
- Chin, Christopher;
- Narayanan, S. Anand;
- Guarnieri, Joseph W.;
- Widjaja, Gabrielle;
- Beheshti, Afshin;
- Tobias, Gabriel;
- Vatter, Fanny;
- Hirschberg, Jeremy Wain;
- Kleinman, Ashley
Publication type:
Article
Multi-omic comparative analysis of COVID-19 and bacterial sepsis-induced ARDS.
Published in:
PLoS Pathogens, 2022, v. 18, n. 9, p. 1, doi. 10.1371/journal.ppat.1010819
By:
- Batra, Richa;
- Whalen, William;
- Alvarez-Mulett, Sergio;
- Gomez-Escobar, Luis G.;
- Hoffman, Katherine L.;
- Simmons, Will;
- Harrington, John;
- Chetnik, Kelsey;
- Buyukozkan, Mustafa;
- Benedetti, Elisa;
- Choi, Mary E.;
- Suhre, Karsten;
- Schenck, Edward;
- Choi, Augustine M. K.;
- Schmidt, Frank;
- Cho, Soo Jung;
- Krumsiek, Jan
Publication type:
Article

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