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Molecular Genetics of the Posterior Sex Combs/Suppressor 2 of zeste Region of Drosophila: Aberrant Expression of the Suppressor 2 of zeste Gene Results in Abnormal Bristle Development.
Published in:
Genetics, 1991, v. 128, n. 1, p. 119
By:
- Brunk, Brian P.;
- Martin, Elisabeth C.;
- Adler, Paul N.
Publication type:
Article
Aristapedioid: A Gain of Function, Homeotic Mutation in Drosophila melanogaster.
Published in:
Genetics, 1990, v. 124, n. 1, p. 145
By:
- Brunk, Brian P.;
- Adler, Paul N.
Publication type:
Article
MicrobiomeDB: a systems biology platform for integrating, mining and analyzing microbiome experiments.
Published in:
Nucleic Acids Research, 2018, v. 46, n. D1, p. D684, doi. 10.1093/nar/gkx1027
By:
- Oliveira, Francislon S;
- Brestelli, John;
- Cade, Shon;
- Zheng, Jie;
- Iodice, John;
- Fischer, Steve;
- Aurrecoechea, Cristina;
- Kissinger, Jessica C;
- Brunk, Brian P;
- Stoeckert, Christian J
Publication type:
Article
EuPathDB: the eukaryotic pathogen genomics database resource.
Published in:
Nucleic Acids Research, 2017, v. 45, n. D1, p. D581, doi. 10.1093/nar/gkw1105
By:
- Aurrecoechea, Cristina;
- Barreto, Ana;
- Basenko, Evelina Y.;
- Brestelli, John;
- Brunk, Brian P.;
- Cade, Shon;
- Crouch, Kathryn;
- Doherty, Ryan;
- Falke, Dave;
- Fischer, Steve;
- Gajria, Bindu;
- Harb, Omar S.;
- Heiges, Mark;
- Hertz-Fowler, Christiane;
- Sufen Hu;
- Iodice, John;
- Kissinger, Jessica C.;
- Lawrence, Cris;
- Wei Li;
- Pinney, Deborah F.
Publication type:
Article
Companion: a web server for annotation and analysis of parasite genomes.
Published in:
Nucleic Acids Research, 2016, v. 44, n. W1, p. W29, doi. 10.1093/nar/gkw292
By:
- Steinbiss, Sascha;
- Silva-Franco, Fatima;
- Brunk, Brian;
- Foth, Bernardo;
- Hertz-Fowler, Christiane;
- Berriman, Matthew;
- Otto, Thomas D.
Publication type:
Article
EuPathDB: The Eukaryotic Pathogen database.
Published in:
Nucleic Acids Research, 2013, v. 41, p. D684, doi. 10.1093/nar/gks1113
By:
- Aurrecoechea, Cristina;
- Barreto, Ana;
- Brestelli, John;
- Brunk, Brian P.;
- Shon Cade;
- Doherty, Ryan;
- Fischer, Steve;
- Gajria, Bindu;
- Xin Gao;
- Gingle, Alan;
- Grant, Greg;
- Harb, Omar S.;
- Heiges, Mark;
- Sufen Hu;
- Iodice, John;
- Kissinger, Jessica C.;
- Kraemer, Eileen T.;
- Wei Li;
- Pinney, Deborah F.;
- Pitts, Brian
Publication type:
Article
FungiDB: an integrated functional genomics database for fungi.
Published in:
Nucleic Acids Research, 2012, p. D675, doi. 10.1093/nar/gkr918
By:
- Stajich, Jason E.;
- Harris, Todd;
- Brunk, Brian P.;
- Brestelli, John;
- Fischer, Steve;
- Harb, Omar S.;
- Kissinger, Jessica C.;
- Li, Wei;
- Nayak, Vishal;
- Pinney, Deborah F.;
- Stoeckert, Chris J.;
- Roos, David S.
Publication type:
Article
AmoebaDB and MicrosporidiaDB: functional genomic resources for Amoebozoa and Microsporidia species.
Published in:
Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D612, doi. 10.1093/nar/gkq1006
By:
- Aurrecoechea, Cristina;
- Barreto, Ana;
- Brestelli, John;
- Brunk, Brian P.;
- Caler, Elisabet V.;
- Fischer, Steve;
- Gajria, Bindu;
- Gao, Xin;
- Gingle, Alan;
- Grant, Greg;
- Harb, Omar S.;
- Heiges, Mark;
- Iodice, John;
- Kissinger, Jessica C.;
- Kraemer, Eileen T.;
- Li, Wei;
- Nayak, Vishal;
- Pennington, Cary;
- Pinney, Deborah F.;
- Pitts, Brian
Publication type:
Article
EuPathDB: a portal to eukaryotic pathogen databases.
Published in:
Nucleic Acids Research, 2010, v. 38, p. D415, doi. 10.1093/nar/gkp941
By:
- Aurrecoechea, Cristina;
- Brestelli, John;
- Brunk, Brian P.;
- Fischer, Steve;
- Gajria, Bindu;
- Xin Gao;
- Gingle, Alan;
- Grant, Greg;
- Harb, Omar S.;
- Heiges, Mark;
- Innamorato, Frank;
- Iodice, John;
- Kissinger, Jessica C.;
- Kraemer, Eileen T.;
- Wei Li;
- Miller, John A.;
- Nayak, Vishal;
- Pennington, Cary;
- Pinney, Deborah F.;
- Roos, David S.
Publication type:
Article
TriTrypDB: a functional genomic resource for the Trypanosomatidae.
Published in:
Nucleic Acids Research, 2010, v. 38, p. D457, doi. 10.1093/nar/gkp851
By:
- Aslett, Martin;
- Aurrecoechea, Cristina;
- Berriman, Matthew;
- Brestelli, John;
- Brunk, Brian P.;
- Carrington, Mark;
- Depledge, Daniel P.;
- Fischer, Steve;
- Gajria, Bindu;
- Xin Gao;
- Gardner, Malcolm J.;
- Gingle, Alan;
- Grant, Greg;
- Harb, Omar S.;
- Heiges, Mark;
- Hertz-Fowler, Christiane;
- Houston, Robin;
- Innamorato, Frank;
- Iodice, John;
- Kissinger, Jessica C.
Publication type:
Article
PlasmoDB: a functional genomic database for malaria parasites.
Published in:
Nucleic Acids Research, 2009, v. 37, n. suppl_1, p. D539, doi. 10.1093/nar/gkn814
By:
- Aurrecoechea, Cristina;
- Brestelli, John;
- Brunk, Brian P.;
- Dommer, Jennifer;
- Fischer, Steve;
- Gajria, Bindu;
- Gao, Xin;
- Gingle, Alan;
- Grant, Greg;
- Harb, Omar S.;
- Heiges, Mark;
- Innamorato, Frank;
- Iodice, John;
- Kissinger, Jessica C.;
- Kraemer, Eileen;
- Li, Wei;
- Miller, John A.;
- Nayak, Vishal;
- Pennington, Cary;
- Pinney, Deborah F.
Publication type:
Article
GiardiaDB and TrichDB: integrated genomic resources for the eukaryotic protist pathogens Giardia lamblia and Trichomonas vaginalis.
Published in:
Nucleic Acids Research, 2009, v. 37, n. suppl_1, p. D526, doi. 10.1093/nar/gkn631
By:
- Aurrecoechea, Cristina;
- Brestelli, John;
- Brunk, Brian P.;
- Carlton, Jane M.;
- Dommer, Jennifer;
- Fischer, Steve;
- Gajria, Bindu;
- Gao, Xin;
- Gingle, Alan;
- Grant, Greg;
- Harb, Omar S.;
- Heiges, Mark;
- Innamorato, Frank;
- Iodice, John;
- Kissinger, Jessica C.;
- Kraemer, Eileen;
- Li, Wei;
- Miller, John A.;
- Morrison, Hilary G.;
- Nayak, Vishal
Publication type:
Article
ToxoDB: an integrated Toxoplasma gondii database resource.
Published in:
Nucleic Acids Research, 2008, v. 36, p. D553
By:
- Gajria, Bindu;
- Bahl, Amit;
- Brestelli, John;
- Dommer, Jennifer;
- Fischer, Steve;
- Gao, Xin;
- Heiges, Mark;
- Iodice, John;
- Kissinger, Jessica C.;
- Mackey, Aaron J.;
- Pinney, Deborah F.;
- Roos, David S.;
- Stoeckert, Christian J.;
- Wang, Haiming;
- Brunk, Brian P.
Publication type:
Article
HFR1 Is Crucial for Transcriptome Regulation in the Cryptochrome 1-Mediated Early Response to Blue Light in Arabidopsis thaliana.
Published in:
PLoS ONE, 2008, v. 3, n. 10, p. 1, doi. 10.1371/journal.pone.0003563
By:
- Xiao-Ning Zhang;
- Yingjie Wu;
- Tobias, John W.;
- Brunk, Brian P.;
- Deitzer, Gerald F.;
- Dongmei Liu
Publication type:
Article
A large-scale proteogenomics study of apicomplexan pathogens- Toxoplasma gondii and Neospora caninum.
Published in:
Proteomics, 2015, v. 15, n. 15, p. 2618, doi. 10.1002/pmic.201400553
By:
- Krishna, Ritesh;
- Xia, Dong;
- Sanderson, Sanya;
- Shanmugasundram, Achchuthan;
- Vermont, Sarah;
- Bernal, Axel;
- Daniel‐Naguib, Gianluca;
- Ghali, Fawaz;
- Brunk, Brian P.;
- Roos, David S.;
- Wastling, Jonathan M.;
- Jones, Andrew R.
Publication type:
Article
The strategies WDK: a graphical search interface and web development kit for functional genomics databases.
Published in:
Database: The Journal of Biological Databases & Curation, 2011, v. 2011, p. 1, doi. 10.1093/database/bar027
By:
- Fischer, Steve;
- Aurrecoechea, Cristina;
- Brunk, Brian P.;
- Xin Gao;
- Harb, Omar S.;
- Kraemer, Eileen T.;
- Pennington, Cary;
- Treatman, Charles;
- Kissinger, Jessica C.;
- Roos, David S.;
- Stoeckert, Christian J.
Publication type:
Article
PlasmoDB: the Plasmodium genome resource. A database integrating experimental and computational data.
Published in:
Nucleic Acids Research, 2003, v. 31, n. 1, p. 212, doi. 10.1093/nar/gkg081
By:
- Bahl, Amit;
- Brunk, Brian;
- Crabtree, Jonathan;
- Fraunholz, Martin J.;
- Gajria, Bindu;
- Grant, Gregory R.;
- Ginsburg, Hagai;
- Gupta, Dinesh;
- Kissinger, Jessica C.;
- Labo, Philip;
- Li, Li;
- Mailman, Matthew D.;
- Milgram, Arthur J.;
- Pearson, David S.;
- Roos, David S.;
- Schug, Jonathan;
- Stoeckert, Christian J.;
- Whetzel, Patricia
Publication type:
Article
PlasmoDB: the Plasmodium genome resource. An integrated database providing tools for accessing, analyzing and mapping expression and sequence data (both finished and unfinished).
Published in:
Nucleic Acids Research, 2002, v. 30, n. 1, p. 87, doi. 10.1093/nar/30.1.87
By:
- Bahl, Amit;
- Brunk, Brian;
- Coppel, Ross L.;
- Crabtree, Jonathan;
- Diskin, Sharon J.;
- Fraunholz, Martin J.;
- Grant, Gregory R.;
- Gupta, Dinesh;
- Huestis, Robert L.;
- Kissinger, Jessica C.;
- Labo, Philip;
- Li, Li;
- McWeeney, Shannon K.;
- Milgram, Arthur J.;
- Roos, David S.;
- Schug, Jonathan;
- Stoeckert Jr, Christian J.
Publication type:
Article
EpoDB: a prototype database for the analysis of genes expressed during vertebrate erythropoiesis.
Published in:
Nucleic Acids Research, 1999, v. 27, n. 1, p. 200, doi. 10.1093/nar/27.1.200
By:
- Stoeckert, Jr, Christian J.;
- Salas, Fidel;
- Brunk, Brian;
- Overton, G. Christian
Publication type:
Article
EpoDB: a database of genes expressed during vertebrate erythropoiesis.
Published in:
Nucleic Acids Research, 1998, v. 26, n. 1, p. 290, doi. 10.1093/nar/26.1.288
By:
- Salas, Fidel;
- Haas, Juergen;
- Brunk, Brian;
- Stoeckert, Jr, Christian J.;
- Overton, G. Christian
Publication type:
Article
Local admixture of amplified and diversified secreted pathogenesis determinants shapes mosaic Toxoplasma gondii genomes.
Published in:
Nature Communications, 2016, v. 7, n. 1, p. 10147, doi. 10.1038/ncomms10147
By:
- Lorenzi, Hernan;
- Khan, Asis;
- Behnke, Michael S.;
- Namasivayam, Sivaranjani;
- Swapna, Lakshmipuram S.;
- Hadjithomas, Michalis;
- Karamycheva, Svetlana;
- Pinney, Deborah;
- Brunk, Brian P.;
- Ajioka, James W.;
- Ajzenberg, Daniel;
- Boothroyd, John C.;
- Boyle, Jon P.;
- Dardé, Marie L.;
- Diaz-Miranda, Maria A.;
- Dubey, Jitender P.;
- Fritz, Heather M.;
- Gennari, Solange M.;
- Gregory, Brian D.;
- Kim, Kami
Publication type:
Article
Comparative Genomics of the Apicomplexan Parasites Toxoplasma gondii and Neospora caninum: Coccidia Differing in Host Range and Transmission Strategy.
Published in:
PLoS Pathogens, 2012, v. 8, n. 3, p. 1, doi. 10.1371/journal.ppat.1002567
By:
- Reid, Adam James;
- Vermont, Sarah J.;
- Cotton, James A.;
- Harris, David;
- Hill-Cawthorne, Grant A.;
- Könen-Waisman, Stephanie;
- Latham, Sophia M.;
- Mourier, Tobias;
- Norton, Rebecca;
- Quail, Michael A.;
- Sanders, Mandy;
- Shanmugam, Dhanasekaran;
- Sohal, Amandeep;
- Wasmuth, James D.;
- Brunk, Brian;
- Grigg, Michael E.;
- Howard, Jonathan C.;
- Parkinson, John;
- Roos, David S.;
- Trees, Alexander J.
Publication type:
Article
Identification of candidate maternal-effect genes through comparison of multiple microarray data sets.
Published in:
Mammalian Genome, 2006, v. 17, n. 9, p. 941, doi. 10.1007/s00335-006-0034-6
By:
- Mager, Jesse;
- Schultz, Richard M.;
- Brunk, Brian P.;
- Bartolomei, Marisa S.
Publication type:
Article
VEuPathDB: the eukaryotic pathogen, vector and host bioinformatics resource center.
Published in:
Nucleic Acids Research, 2022, v. 50, n. D1, p. D898, doi. 10.1093/nar/gkab929
By:
- Amos, Beatrice;
- Aurrecoechea, Cristina;
- Barba, Matthieu;
- Barreto, Ana;
- Basenko, Evelina Y;
- Bażant, Wojciech;
- Belnap, Robert;
- Blevins, Ann S;
- Böhme, Ulrike;
- Brestelli, John;
- Brunk, Brian P;
- Caddick, Mark;
- Callan, Danielle;
- Campbell, Lahcen;
- Christensen, Mikkel B;
- Christophides, George K;
- Crouch, Kathryn;
- Davis, Kristina;
- DeBarry, Jeremy;
- Doherty, Ryan
Publication type:
Article
RNA-Rocket: an RNA-Seq analysis resource for infectious disease research.
Published in:
2015
By:
- Warren, Andrew S.;
- Aurrecoechea, Cristina;
- Brunk, Brian;
- Desai, Prerak;
- Emrich, Scott;
- Giraldo-Calderón, Gloria I.;
- Harb, Omar;
- Hix, Deborah;
- Lawson, Daniel;
- Machi, Dustin;
- Chunhong Mao;
- McClelland, Michael;
- Nordberg, Eric;
- Shukla, Maulik;
- Vosshall, Leslie B.;
- Wattam, Alice R.;
- Will, Rebecca;
- Hyun Seung Yoo;
- Sobral, Bruno
Publication type:
Product Review
Comparative analysis of RNA-Seq alignment algorithms and the RNA-Seq unified mapper (RUM).
Published in:
Bioinformatics, 2011, v. 27, n. 18, p. 2518, doi. 10.1093/bioinformatics/btr427
By:
- Grant, Gregory R.;
- Farkas, Michael H.;
- Pizarro, Angel D.;
- Lahens, Nicholas F.;
- Schug, Jonathan;
- Brunk, Brian P.;
- Stoeckert, Christian J.;
- Hogenesch, John B.;
- Pierce, Eric A.
Publication type:
Article

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