OpenURL Connection Search

Select item for more details and to access through your institution.

Optimizing methods and dodging pitfalls in microbiome research.
Published in:
Microbiome, 2017, v. 5, p. 1, doi. 10.1186/s40168-017-0267-5
By:
- Dorothy Kim;
- Hofstaedter, Casey E.;
- Chunyu Zhao;
- Mattei, Lisa;
- Tanes, Ceylan;
- Clarke, Erik;
- Lauder, Abigail;
- Sherrill-Mix, Scott;
- Chehoud, Christel;
- Kelsen, Judith;
- Conrad, Máire;
- Collman, Ronald G.;
- Baldassano, Robert;
- Bushman, Frederic D.;
- Bittinger, Kyle
Publication type:
Article
Normalization and microbial differential abundance strategies depend upon data characteristics.
Published in:
Microbiome, 2017, v. 5, p. 1, doi. 10.1186/s40168-017-0237-y
By:
- Weiss, Sophie;
- Zhenjiang Zech Xu;
- Peddada, Shyamal;
- Amir, Amnon;
- Bittinger, Kyle;
- Gonzalez, Antonio;
- Lozupone, Catherine;
- Zaneveld, Jesse R.;
- Vázquez-Baeza, Yoshiki;
- Birmingham, Amanda;
- Hyde, Embriette R.;
- Knight, Rob
Publication type:
Article
Comparison of placenta samples with contamination controls does not provide evidence for a distinct placenta microbiota.
Published in:
Microbiome, 2016, v. 4, p. 1, doi. 10.1186/s40168-016-0172-3
By:
- Laude, Abigail P.;
- Roche, Aoife M.;
- Sherrill-Mix, Scott;
- Bailey, Aubrey;
- Laughlin, Alice L.;
- Bittinger, Kyle;
- Leite, Rita;
- Elovitz, Michal A.;
- Parry, Samuel;
- Bushman, Frederic D.
Publication type:
Article
Composition and dynamics of the respiratory tract microbiome in intubated patients.
Published in:
Microbiome, 2016, v. 4, p. 1, doi. 10.1186/s40168-016-0151-8
By:
- Kelly, Brendan J.;
- Imai, Ize;
- Bittinger, Kyle;
- Laughlin, Alice;
- Fuchs, Barry D.;
- Bushman, Frederic D.;
- Collman, Ronald G.
Publication type:
Article
Association of Enterovirus D68 with Acute Flaccid Myelitis, Philadelphia, Pennsylvania, USA, 2009-2018.
Published in:
2019
By:
- Uprety, Priyanka;
- Curtis, Darcy;
- Elkan, Michael;
- Fink, Jeffrey;
- Rajagopalan, Ramakrishnan;
- Zhao, Erin H.;
- Bittinger, Kyle;
- Mitchell, Stephanie;
- Ulloa, Erlinda R.;
- Hopkins, Sarah;
- Graf, Erin H.;
- Zhao, Chunyu
Publication type:
journal article
Persistence of the Probiotic Lacticaseibacillus rhamnosus Strain GG (LGG) in an In Vitro Model of the Gut Microbiome.
Published in:
International Journal of Molecular Sciences, 2022, v. 23, n. 21, p. 12973, doi. 10.3390/ijms232112973
By:
- Mahalak, Karley K.;
- Firrman, Jenni;
- Bobokalonov, Jamshed;
- Narrowe, Adrienne B.;
- Bittinger, Kyle;
- Daniel, Scott;
- Tanes, Ceylan;
- Mattei, Lisa M.;
- Zeng, Wei-Bin;
- Soares, Jason W.;
- Kobori, Masuko;
- Lemons, Johanna M. S.;
- Tomasula, Peggy M.;
- Liu, LinShu
Publication type:
Article
A short-term, randomized, controlled, feasibility study of the effects of different vegetables on the gut microbiota and microRNA expression in infants.
Published in:
Frontiers in Microbiomes, 2024, p. 1, doi. 10.3389/frmbi.2024.1342464
By:
- Ferro, Lynn E.;
- Bittinger, Kyle;
- Trudo, Sabrina P.;
- Beane, Kaleigh E.;
- Polson, Shawn W.;
- Jae Kyeom Kim;
- Trabulsi, Jillian C.
Publication type:
Article
Bidirectional interactions between indomethacin and the murine intestinal microbiota.
Published in:
eLife, 2015, p. 1, doi. 10.7554/eLife.08973
By:
- Xue Liang;
- Bittinger, Kyle;
- Xuanwen Li;
- Abernethy, Darrell R.;
- Bushman, Frederic D.;
- FitzGerald, Garret A.
Publication type:
Article
Host mitochondria influence gut microbiome diversity: A role for ROS.
Published in:
Science Signaling, 2019, v. 12, n. 588, p. N.PAG, doi. 10.1126/scisignal.aaw3159
By:
- Yardeni, Tal;
- Tanes, Ceylan E.;
- Bittinger, Kyle;
- Mattei, Lisa M.;
- Schaefer, Patrick M.;
- Singh, Larry N.;
- Wu, Gary D.;
- Murdock, Deborah G.;
- Wallace, Douglas C.
Publication type:
Article
Author Correction: Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2.
Published in:
2019
By:
- Bolyen, Evan;
- Rideout, Jai Ram;
- Dillon, Matthew R.;
- Bokulich, Nicholas A.;
- Abnet, Christian C.;
- Al-Ghalith, Gabriel A.;
- Alexander, Harriet;
- Alm, Eric J.;
- Arumugam, Manimozhiyan;
- Asnicar, Francesco;
- Bai, Yang;
- Bisanz, Jordan E.;
- Bittinger, Kyle;
- Brejnrod, Asker;
- Brislawn, Colin J.;
- Brown, C. Titus;
- Callahan, Benjamin J.;
- Caraballo-Rodríguez, Andrés Mauricio;
- Chase, John;
- Cope, Emily K.
Publication type:
Correction Notice
Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2.
Published in:
2019
By:
- Bolyen, Evan;
- Rideout, Jai Ram;
- Dillon, Matthew R.;
- Bokulich, Nicholas A.;
- Abnet, Christian C.;
- Al-Ghalith, Gabriel A.;
- Alexander, Harriet;
- Alm, Eric J.;
- Arumugam, Manimozhiyan;
- Asnicar, Francesco;
- Bai, Yang;
- Bisanz, Jordan E.;
- Bittinger, Kyle;
- Brejnrod, Asker;
- Brislawn, Colin J.;
- Brown, C. Titus;
- Callahan, Benjamin J.;
- Caraballo-Rodríguez, Andrés Mauricio;
- Chase, John;
- Cope, Emily K.
Publication type:
Letter
QIIME allows analysis of high-throughput community sequencing data.
Published in:
2010
By:
- Caporaso, J. Gregory;
- Kuczynski, Justin;
- Stombaugh, Jesse;
- Bittinger, Kyle;
- Bushman, Frederic D.;
- Costello, Elizabeth K.;
- Fierer, Noah;
- Peña, Antonio Gonzalez;
- Goodrich, Julia K.;
- Gordon, Jeffrey I.;
- Huttley, Gavin A.;
- Kelley, Scott T.;
- Knights, Dan;
- Koenig, Jeremy E.;
- Ley, Ruth E.;
- Lozupone, Catherine A.;
- McDonald, Daniel;
- Muegge, Brian D.;
- Pirrung, Meg;
- Reeder, Jens
Publication type:
Letter
Fungi of the Murine Gut: Episodic Variation and Proliferation during Antibiotic Treatment.
Published in:
PLoS ONE, 2013, v. 8, n. 8, p. 1, doi. 10.1371/journal.pone.0071806
By:
- Dollive, Serena;
- Chen, Ying-Yu;
- Grunberg, Stephanie;
- Bittinger, Kyle;
- Hoffmann, Christian;
- Vandivier, Lee;
- Cuff, Christopher;
- Lewis, James D.;
- Wu, Gary D.;
- Bushman, Frederic D.
Publication type:
Article
Assessing Bacterial Populations in the Lung by Replicate Analysis of Samples from the Upper and Lower Respiratory Tracts.
Published in:
PLoS ONE, 2012, v. 7, n. 9, p. 1, doi. 10.1371/journal.pone.0042786
By:
- Charlson, Emily S.;
- Bittinger, Kyle;
- Chen, Jun;
- Diamond, Joshua M.;
- Hongzhe Li;
- Collman, Ronald G.;
- Bushman, Frederic D.;
- Highlander, Sarah K.
Publication type:
Article
Disordered Microbial Communities in the Upper Respiratory Tract of Cigarette Smokers.
Published in:
PLoS ONE, 2010, v. 5, n. 12, p. 1, doi. 10.1371/journal.pone.0015216
By:
- Charlson, Emily S.;
- Jun Chen;
- Custers-Allen, Rebecca;
- Bittinger, Kyle;
- Hongzhe Li;
- Sinha, Rohini;
- Hwang, Jennifer;
- Bushman, Frederic D.;
- Collman, Ronald G.
Publication type:
Article
Microbial Lineages in Sarcoidosis. A Metagenomic Analysis Tailored for Low-Microbial Content Samples.
Published in:
2018
By:
- Clarke, Erik L.;
- Lauder, Abigail P.;
- Hofstaedter, Casey E.;
- Young Hwang;
- Fitzgerald, Ayannah S.;
- Imai, Ize;
- Biernat, Wojciech;
- Rękawiecki, Bartłomiej;
- Majewska, Hanna;
- Dubaniewicz, Anna;
- Litzky, Leslie A.;
- Feldman, Michael D.;
- Bittinger, Kyle;
- Rossman, Milton D.;
- Patterson, Karen C.;
- Bushman, Frederic D.;
- Collman, Ronald G.;
- Hwang, Young
Publication type:
journal article
Excess dietary fructose does not alter gut microbiota or permeability in humans: A pilot randomized controlled study.
Published in:
Journal of Clinical & Translational Science, 2021, v. 5, n. 1, p. 1, doi. 10.1017/cts.2021.801
By:
- Alemán, José O.;
- Henderson, Wendy A.;
- Walker, Jeanne M.;
- Ronning, Andrea;
- Jones, Drew R.;
- Walter, Peter J.;
- Daniel, Scott G.;
- Bittinger, Kyle;
- Vaughan, Roger;
- MacArthur, Robert;
- Chen, Kun;
- Breslow, Jan L.;
- Holt, Peter R.
Publication type:
Article
4444 The effect of early life antibiotics on gut microbiome and fecal bile acid concentrations in children.
Published in:
2020
By:
- Benitez, Alain Jesus;
- Gerber, Jeffrey S.;
- Tanes, Ceylan;
- Bittinger, Kyle;
- Friedman, Elliot S.;
- Li, Hongzhe;
- Bushman, Frederic D.;
- Wu, Gary D.;
- Zemel, Babette S.
Publication type:
Abstract
Administration of Bifidobacterium animalis subsp. lactis strain BB-12® in healthy children: characterization, functional composition, and metabolism of the gut microbiome.
Published in:
Frontiers in Microbiology, 2023, p. 1, doi. 10.3389/fmicb.2023.1165771
By:
- Vizioli, Carlotta;
- Jaime-Lara, Rosario;
- Daniel, Scott G.;
- Franks, Alexis;
- Diallo, Ana F.;
- Bittinger, Kyle;
- Tan, Tina P.;
- Merenstein, Daniel J.;
- Brooks, Brianna;
- Joseph, Paule V.;
- Maki, Katherine A.
Publication type:
Article
Administration of Bifidobacterium animalis subsp. lactis strain BB-12® in healthy children: characterization, functional composition, and metabolism of the gut microbiome.
Published in:
Frontiers in Microbiology, 2023, p. 1, doi. 10.3389/fmicb.2023.1165771
By:
- Vizioli, Carlotta;
- Jaime-Lara, Rosario;
- Daniel, Scott G.;
- Franks, Alexis;
- Diallo, Ana F.;
- Bittinger, Kyle;
- Tan, Tina P.;
- Merenstein, Daniel J.;
- Brooks, Brianna;
- Joseph, Paule V.;
- Maki, Katherine A.
Publication type:
Article
Investigating hospital Mycobacterium chelonae infection using whole genome sequencing and hybrid assembly.
Published in:
PLoS ONE, 2020, v. 15, n. 11, p. 1, doi. 10.1371/journal.pone.0236533
By:
- Gu, Christopher H.;
- Zhao, Chunyu;
- Hofstaedter, Casey;
- Tebas, Pablo;
- Glaser, Laurel;
- Baldassano, Robert;
- Bittinger, Kyle;
- Mattei, Lisa M.;
- Bushman, Frederic D.
Publication type:
Article
Infrequent intrahousehold transmission of Clostridioides difficile between pet owners and their pets.
Published in:
Zoonoses & Public Health, 2023, v. 70, n. 4, p. 341, doi. 10.1111/zph.13032
By:
- Redding, Laurel E.;
- Habing, Greg G.;
- Tu, Vincent;
- Bittinger, Kyle L.;
- O'Day, Jack;
- Pancholi, Preeti;
- Wang, Shu‐Hua;
- Alexander, Andrew;
- Kelly, Brendan J.;
- Weese, J. Scott;
- Stull, Jason W.
Publication type:
Article
Metagenomic assessment of the Cebus apella gut microbiota.
Published in:
American Journal of Primatology, 2019, v. 81, n. 10/11, p. N.PAG, doi. 10.1002/ajp.23023
By:
- Firrman, Jenni;
- Liu, LinShu;
- Tanes, Ceylan;
- Bittinger, Kyle;
- Mahalak, Karley;
- Rinaldi, William
Publication type:
Article
The Role of Gut Dysbiosis in the Loss of Intestinal Immune Cell Functions and Viral Pathogenesis.
Published in:
Microorganisms, 2023, v. 11, n. 7, p. 1849, doi. 10.3390/microorganisms11071849
By:
- Fakharian, Farzaneh;
- Thirugnanam, Siva;
- Welsh, David A.;
- Kim, Woong-Ki;
- Rappaport, Jay;
- Bittinger, Kyle;
- Rout, Namita
Publication type:
Article
Distinct intestinal microbial signatures linked to accelerated systemic and intestinal biological aging.
Published in:
Microbiome, 2024, v. 21, p. 1, doi. 10.1186/s40168-024-01758-4
By:
- Singh, Shalini;
- Giron, Leila B.;
- Shaikh, Maliha W.;
- Shankaran, Shivanjali;
- Engen, Phillip A.;
- Bogin, Zlata R.;
- Bambi, Simona A.;
- Goldman, Aaron R.;
- Azevedo, Joao L. L. C.;
- Orgaz, Lorena;
- de Pedro, Nuria;
- González, Patricia;
- Giera, Martin;
- Verhoeven, Aswin;
- Sánchez-López, Elena;
- Pandrea, Ivona;
- Kannan, Toshitha;
- Tanes, Ceylan E.;
- Bittinger, Kyle;
- Landay, Alan L.
Publication type:
Article
Triclosan has a robust, yet reversible impact on human gut microbial composition in vitro.
Published in:
PLoS ONE, 2020, v. 15, n. 6, p. 1, doi. 10.1371/journal.pone.0234046
By:
- Mahalak, Karley K.;
- Firrman, Jenni;
- Lee, Jung-Jin;
- Bittinger, Kyle;
- Nuñez, Alberto;
- Mattei, Lisa M.;
- Zhang, Huanjia;
- Fett, Bryton;
- Bobokalonov, Jamshed;
- Arango-Argoty, Gustavo;
- Zhang, Liqing;
- Zhang, Guodong;
- Liu, Lin Shu
Publication type:
Article
Sex-dependent compensatory mechanisms preserve blood pressure homeostasis in prostacyclin receptor-deficient mice.
Published in:
2021
By:
- Tang, Soon Y.;
- Hu Meng;
- Anderson, Seán T.;
- Sarantopoulou, Dimitra;
- Ghosh, Soumita;
- Lahens, Nicholas F.;
- Theken, Katherine N.;
- Ricciotti, Emanuela;
- Hennessy, Elizabeth J.;
- Tu, Vincent;
- Bittinger, Kyle;
- Weiljie, Aalim M.;
- Grant, Gregory R.;
- FitzGerald, Garret A.;
- Meng, Hu;
- Weljie, Aalim M
Publication type:
journal article
Gut microbiota modulate dendritic cell antigen presentation and radiotherapy-induced antitumor immune response.
Published in:
2020
By:
- Uribe-Herranz, Mireia;
- Rafail, Stavros;
- Beghi, Silvia;
- Gil-de-Gómez, Luis;
- Verginadis, Ioannis;
- Bittinger, Kyle;
- Pustylnikov, Sergey;
- Pierini, Stefano;
- Perales-Linares, Renzo;
- Blair, Ian A.;
- Mesaros, Clementina A.;
- Snyder, Nathaniel W.;
- Bushman, Frederic;
- Koumenis, Constantinos;
- Facciabene, Andrea
Publication type:
journal article
Gut microbiota modulate dendritic cell antigen presentation and radiotherapy-induced antitumor immune response.
Published in:
Journal of Clinical Investigation, 2020, v. 130, n. 1, p. 466, doi. 10.1172/JCI124332
By:
- Uribe-Herranz, Mireia;
- Rafail, Stavros;
- Beghi, Silvia;
- Gil-de-Gómez, Luis;
- Verginadis, Ioannis;
- Bittinger, Kyle;
- Pustylnikov, Sergey;
- Pierini, Stefano;
- Perales-Linares, Renzo;
- Blair, Ian A.;
- Mesaros, Clementina A.;
- Snyder, Nathaniel W.;
- Bushman, Frederic;
- Koumenis, Constantinos;
- Facciabene, Andrea
Publication type:
Article
Engineering the gut microbiota to treat hyperammonemia.
Published in:
Journal of Clinical Investigation, 2015, v. 125, n. 7, p. 2841, doi. 10.1172/JCI79214
By:
- Shen, Ting-Chin David;
- Albenberg, Lindsey;
- Bittinger, Kyle;
- Chehoud, Christel;
- Ying-Yu Chen;
- Judge, Colleen A.;
- Chau, Lillian;
- Ni, Josephine;
- Sheng, Michael;
- Lin, Andrew;
- Wilkin, Benjamin J.;
- Buza, Elizabeth L.;
- Lewis, James D.;
- Daikhin, Yevgeny;
- Nissim, liana;
- Yudkoff, Marc;
- Bushman, Frederic D.;
- Wu, Gary D.
Publication type:
Article
IgA deficiency destabilizes homeostasis toward intestinal microbes and increases systemic immune dysregulation.
Published in:
Science Immunology, 2023, v. 8, n. 83, p. 1, doi. 10.1126/sciimmunol.ade2335
By:
- Conrey, Peyton E.;
- Denu, Lidiya;
- O'Boyle, Kaitlin C.;
- Rozich, Isaiah;
- Green, Jamal;
- Maslanka, Jeffrey;
- Lubin, Jean-Bernard;
- Duranova, Tereza;
- Haltzman, Brittany L.;
- Gianchetti, Lauren;
- Oldridge, Derek A.;
- De Luna, Nina;
- Vella, Laura A.;
- Allman, David;
- Spergel, Jonathan M.;
- Tanes, Ceylan;
- Bittinger, Kyle;
- Henrickson, Sarah E.;
- Silverman, Michael A.
Publication type:
Article
SARS-CoV-2–specific T cells in unexposed adults display broad trafficking potential and cross-react with commensal antigens.
Published in:
Science Immunology, 2022, v. 7, n. 76, p. 1, doi. 10.1126/sciimmunol.abn3127
By:
- Bartolo, Laurent;
- Afroz, Sumbul;
- Pan, Yi-Gen;
- Xu, Ruozhang;
- Williams, Lea;
- Lin, Chin-Fang;
- Tanes, Ceylan;
- Bittinger, Kyle;
- Friedman, Elliot S.;
- Gimotty, Phyllis A.;
- Wu, Gary D.;
- Su, Laura F.
Publication type:
Article
Addition of cariogenic pathogens to complex oral microflora drives significant changes in biofilm compositions and functionalities.
Published in:
Microbiome, 2023, v. 11, n. 1, p. 1, doi. 10.1186/s40168-023-01561-7
By:
- Liu, Yuan;
- Daniel, Scott G.;
- Kim, Hye-Eun;
- Koo, Hyun;
- Korostoff, Jonathan;
- Teles, Flavia;
- Bittinger, Kyle;
- Hwang, Geelsu
Publication type:
Article
180. Longitudinal changes in the nasal microbiome of patients with granulomatosis with polyangiitis.
Published in:
2019
By:
- Rhee, Rennie;
- Sreih, Antoine;
- Bittinger, Kyle;
- Mattei, Lisa;
- Lee, Jung-Jin;
- Collman, Ronald;
- Merkel, Peter
Publication type:
Abstract
A role for bacterial urease in gut dysbiosis and Crohn's disease.
Published in:
Science Translational Medicine, 2017, v. 9, n. 416, p. 1, doi. 10.1126/scitranslmed.aah6888
By:
- Ni, Josephine;
- David Shen, Ting-Chin;
- Chen, Eric Z.;
- Bittinger, Kyle;
- Bailey, Aubrey;
- Roggiani, Manuela;
- Sirota-Madi, Alexandra;
- Friedman, Elliot S.;
- Chau, Lillian;
- Lin, Andrew;
- Nissim, Ilana;
- Scott, Justin;
- Lauder, Abigail;
- Hoffmann, Christopher;
- Rivas, Gloriany;
- Albenberg, Lindsey;
- Baldassano, Robert N.;
- Braun, Jonathan;
- Xavier, Ramnik J.;
- Clish, Clary B.
Publication type:
Article
Gut Microbiome Changes Associated with Epithelial Barrier Damage and Systemic Inflammation during Antiretroviral Therapy of Chronic SIV Infection.
Published in:
Viruses (1999-4915), 2021, v. 13, n. 8, p. 1567, doi. 10.3390/v13081567
By:
- Tanes, Ceylan;
- Walker, Edith M.;
- Slisarenko, Nadia;
- Gerrets, Giovanni L.;
- Grasperge, Brooke F.;
- Qin, Xuebin;
- Jazwinski, S. Michal;
- Bushman, Frederic D.;
- Bittinger, Kyle;
- Rout, Namita
Publication type:
Article
A tool kit for quantifying eukaryotic rRNA gene sequences from human microbiome samples.
Published in:
Genome Biology, 2012, v. 13, n. 7, p. r60, doi. 10.1186/gb-2012-13-7-r60
By:
- Dollive, Serena;
- Peterfreund, Gregory L.;
- Sherrill-Mix, Scott;
- Bittinger, Kyle;
- Sinha, Rohini;
- Hoffmann, Christian;
- Nabel, Christopher S.;
- Hill, David A.;
- Artis, David;
- Bachman, Michael A.;
- Custers-Allen, Rebecca;
- Grunberg, Stephanie;
- Wu, Gary D.;
- Lewis, James D.;
- Bushman, Frederic D.
Publication type:
Article
Microbiome changes in young periodontitis patients treated with adjunctive metronidazole and amoxicillin.
Published in:
2021
By:
- Feres, Magda;
- Retamal‐Valdes, Belén;
- Fermiano, Daiane;
- Faveri, Marcelo;
- Figueiredo, Luciene Cristina;
- Mayer, Marcia P.A.;
- Lee, Jung‐Jin;
- Bittinger, Kyle;
- Teles, Flavia;
- Retamal-Valdes, Belén;
- Lee, Jung-Jin
Publication type:
journal article
Lung-enriched Organisms and Aberrant Bacterial and Fungal Respiratory Microbiota after Lung Transplant.
Published in:
American Journal of Respiratory & Critical Care Medicine, 2012, v. 186, n. 6, p. 536, doi. 10.1164/rccm.201204-0693OC
By:
- Charlson, Emily S.;
- Diamond, Joshua M.;
- Bittinger, Kyle;
- Fitzgerald, Ayannah S.;
- Yadav, Anjana;
- Haas, Andrew R.;
- Bushman, Frederic D.;
- Collman, Ronald G.
Publication type:
Article
Topographical Continuity of Bacterial Populations in the Healthy Human Respiratory Tract.
Published in:
American Journal of Respiratory & Critical Care Medicine, 2011, v. 184, n. 8, p. 957, doi. 10.1164/rccm.201104-0655OC
By:
- Charlson, Emily S.;
- Bittinger, Kyle;
- Haas, Andrew R.;
- Fitzgerald, Ayannah S.;
- Frank, Ian;
- Yadav, Anjana;
- Bushman, Frederic D.;
- Collman, Ronald G.
Publication type:
Article
Association Between Breast Milk Bacterial Communities and Establishment and Development of the Infant Gut Microbiome.
Published in:
JAMA Pediatrics, 2017, v. 171, n. 7, p. 647, doi. 10.1001/jamapediatrics.2017.0378
By:
- Pannaraj, Pia S.;
- Fan Li;
- Cerini, Chiara;
- Bender, Jeffrey M.;
- Shangxin Yang;
- Rollie, Adrienne;
- Adisetiyo, Helty;
- Zabih, Sara;
- Lincez, Pamela J.;
- Bittinger, Kyle;
- Bailey, Aubrey;
- Bushman, Frederic D.;
- Sleasman, John W.;
- Aldrovandi, Grace M.
Publication type:
Article
Cervicovaginal Fungi and Bacteria Associated With Cervical Intraepithelial Neoplasia and High-Risk Human Papillomavirus Infections in a Hispanic Population.
Published in:
Frontiers in Microbiology, 2018, p. N.PAG, doi. 10.3389/fmicb.2018.02533
By:
- Godoy-Vitorino, Filipa;
- Romaguera, Josefina;
- Zhao, Chunyu;
- Vargas-Robles, Daniela;
- Ortiz-Morales, Gilmary;
- Vázquez-Sánchez, Frances;
- Sanchez-Vázquez, Maria;
- de la Garza-Casillas, Manuel;
- Martinez-Ferrer, Magaly;
- White, James Robert;
- Bittinger, Kyle;
- Dominguez-Bello, Maria Gloria;
- Blaser, Martin J.
Publication type:
Article
Dietary Regulation of the Gut Microbiota Engineered by a Minimal Defined Bacterial Consortium.
Published in:
PLoS ONE, 2016, v. 11, n. 5, p. 1, doi. 10.1371/journal.pone.0155620
By:
- Shen, Ting-Chin David;
- Chehoud, Christel;
- Ni, Josephine;
- Hsu, Evelyn;
- Chen, Ying-Yu;
- Bailey, Aubrey;
- Laughlin, Alice;
- Bittinger, Kyle;
- Bushman, Frederic D;
- Wu, Gary D
Publication type:
Article
Early stool microbiome and metabolome signatures in pediatric patients undergoing allogeneic hematopoietic cell transplantation.
Published in:
Pediatric Blood & Cancer, 2022, v. 69, n. 1, p. 1, doi. 10.1002/pbc.29384
By:
- Elgarten, Caitlin W.;
- Tanes, Ceylan;
- Lee, Jung‐Jin;
- Danziger‐Isakov, Lara A.;
- Grimley, Michael S.;
- Green, Michael;
- Michaels, Marian G.;
- Barnum, Jessie L.;
- Ardura, Monica I.;
- Auletta, Jeffery J.;
- Blumenstock, Jesse;
- Seif, Alix E.;
- Bittinger, Kyle L.;
- Fisher, Brian T.
Publication type:
Article
Outcomes and Predictors of Sustained Remission After Drug Withdrawal in Pediatric Crohn Disease.
Published in:
2022
By:
- Stein, Ronen;
- Daniel, Scott G.;
- Baldassano, Robert N.;
- Feigenbaum, Kara;
- Kachelries, Kelly;
- Sigall-Boneh, Rotem;
- Weston, Sarah;
- Levine, Arie;
- Bittinger, Kyle
Publication type:
journal article
Dynamic Changes in the Nasal Microbiome Associated With Disease Activity in Patients With Granulomatosis With Polyangiitis.
Published in:
Arthritis & Rheumatology, 2021, v. 73, n. 9, p. 1703, doi. 10.1002/art.41723
By:
- Rhee, Rennie L.;
- Lu, Jiarui;
- Bittinger, Kyle;
- Lee, Jung‐Jin;
- Mattei, Lisa M.;
- Sreih, Antoine G.;
- Chou, Sherry;
- Miner, Jonathan J.;
- Cohen, Noam A.;
- Kelly, Brendan J.;
- Lee, Hongzhe;
- Grayson, Peter C.;
- Collman, Ronald G.;
- Merkel, Peter A.
Publication type:
Article
Sunbeam: an extensible pipeline for analyzing metagenomic sequencing experiments.
Published in:
Microbiome, 2019, v. 7, n. 1, p. N.PAG, doi. 10.1186/s40168-019-0658-x
By:
- Clarke, Erik L.;
- Taylor, Louis J.;
- Zhao, Chunyu;
- Connell, Andrew;
- Lee, Jung-Jin;
- Fett, Bryton;
- Bushman, Frederic D.;
- Bittinger, Kyle
Publication type:
Article
Lack of detection of a human placenta microbiome in samples from preterm and term deliveries.
Published in:
Microbiome, 2018, v. 6, n. 1, p. N.PAG, doi. 10.1186/s40168-018-0575-4
By:
- Leiby, Jacob S.;
- McCormick, Kevin;
- Sherrill-Mix, Scott;
- Clarke, Erik L.;
- Kessler, Lyanna R.;
- Taylor, Louis J.;
- Hofstaedter, Casey E.;
- Roche, Aoife M.;
- Mattei, Lisa M.;
- Bittinger, Kyle;
- Elovitz, Michal A.;
- Leite, Rita;
- Parry, Samuel;
- Bushman, Frederic D.
Publication type:
Article
Effect of topical swallowed steroids on the bacterial and fungal esophageal microbiota in eosinophilic esophagitis.
Published in:
Allergy, 2021, v. 76, n. 5, p. 1549, doi. 10.1111/all.14602
By:
- Benitez, Alain J.;
- Tanes, Ceylan;
- Mattei, Lisa;
- Hofstaedter, Casey E.;
- Kim, Dorothy K.;
- Gross, Jonathan;
- Ruffner, Melanie A.;
- Albenberg, Lindsey;
- Spergel, Jonathan;
- Bittinger, Kyle;
- Muir, Amanda B.
Publication type:
Article
Upper Respiratory Dysbiosis with a Facultative-dominated Ecotype in Advanced Lung Disease and Dynamic Change after Lung Transplant.
Published in:
2019
By:
- Simon-Soro, Aurea;
- Sohn, Michael B.;
- McGinniss, John E.;
- Imai, Ize;
- Brown, Melanie C.;
- Knecht, Vincent R.;
- Bailey, Aubrey;
- Clarke, Erik L.;
- Cantu, Edward;
- Li, Hongzhe;
- Bittinger, Kyle;
- Diamond, Joshua M.;
- Christie, Jason D.;
- Bushman, Frederic D.;
- Collman, Ronald G.
Publication type:
journal article

Found: 66