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A new class of metrics for learning on real-valued and structured data.
- Published in:
- Data Mining & Knowledge Discovery, 2019, v. 33, n. 4, p. 995, doi. 10.1007/s10618-019-00622-6
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- Publication type:
- Article
Computational interpretation of human genetic variation.
- Published in:
- Human Genetics, 2022, v. 141, n. 10, p. 1545, doi. 10.1007/s00439-022-02483-4
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- Publication type:
- Article
Prioritizing de novo autism risk variants with calibrated gene- and variant-scoring models.
- Published in:
- Human Genetics, 2022, v. 141, n. 10, p. 1595, doi. 10.1007/s00439-021-02356-2
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- Publication type:
- Article
MutDB: update on development of tools for the biochemical analysis of genetic variation.
- Published in:
- Nucleic Acids Research, 2008, v. 36, p. D815
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- Publication type:
- Article
A large-scale evaluation of computational protein function prediction.
- Published in:
- Nature Methods, 2013, v. 10, n. 3, p. 221, doi. 10.1038/nmeth.2340
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- Publication type:
- Article
An algorithm for decoy-free false discovery rate estimation in XL-MS/MS proteomics.
- Published in:
- Bioinformatics, 2024, v. 40, p. i428, doi. 10.1093/bioinformatics/btae233
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- Publication type:
- Article
Classification in biological networks with hypergraphlet kernels.
- Published in:
- Bioinformatics, 2021, v. 37, n. 7, p. 1000, doi. 10.1093/bioinformatics/btaa768
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- Publication type:
- Article
Protein Structure Prediction: Bioinformatics Approach (Book).
- Published in:
- 2004
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- Publication type:
- Book Review
Evaluating Purifying Selection in the Mitochondrial DNA of Various Mammalian Species.
- Published in:
- PLoS ONE, 2013, v. 8, n. 3, p. 1, doi. 10.1371/journal.pone.0058993
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- Publication type:
- Article
Analysis of protein function and its prediction from amino acid sequence.
- Published in:
- Proteins, 2011, v. 79, n. 7, p. 2086, doi. 10.1002/prot.23029
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- Publication type:
- Article
Identification, analysis, and prediction of protein ubiquitination sites.
- Published in:
- Proteins, 2010, v. 78, n. 2, p. 365, doi. 10.1002/prot.22555
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- Publication type:
- Article
An integrated approach to inferring gene-disease associations in humans.
- Published in:
- Proteins, 2008, v. 72, n. 3, p. 1030, doi. 10.1002/prot.21989
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- Publication type:
- Article
Calmodulin signaling: Analysis and prediction of a disorder-dependent molecular recognition.
- Published in:
- Proteins, 2006, v. 63, n. 2, p. 398, doi. 10.1002/prot.20873
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- Publication type:
- Article
Exploiting heterogeneous sequence properties improves prediction of protein disorder.
- Published in:
- Proteins, 2005, v. 61, n. S7, p. 176, doi. 10.1002/prot.20735
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- Publication type:
- Article
Predicting intrinsic disorder from amino acid sequence.
- Published in:
- Proteins, 2003, v. 53, n. S6, p. 566, doi. 10.1002/prot.10532
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- Publication type:
- Article
Extending the coverage of spectral libraries: A neighbor-based approach to predicting intensities of peptide fragmentation spectra.
- Published in:
- Proteomics, 2013, v. 13, n. 5, p. 756, doi. 10.1002/pmic.201100670
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- Publication type:
- Article
Association of Genetic Predisposition and Physical Activity With Risk of Gestational Diabetes in Nulliparous Women.
- Published in:
- JAMA Network Open, 2022, v. 5, n. 9, p. e2229158, doi. 10.1001/jamanetworkopen.2022.29158
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- Publication type:
- Article
Identifiability of two‐component skew normal mixtures with one known component.
- Published in:
- Scandinavian Journal of Statistics, 2019, v. 46, n. 4, p. 955, doi. 10.1111/sjos.12377
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- Publication type:
- Article
Identification of N‐terminal protein processing sites by chemical labeling mass spectrometry.
- Published in:
- Rapid Communications in Mass Spectrometry: RCM, 2019, v. 33, n. 11, p. 1015, doi. 10.1002/rcm.8435
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- Publication type:
- Article
Computational approaches to protein inference in shotgun proteomics.
- Published in:
- BMC Bioinformatics, 2012, v. 13, n. Suppl 16, p. 1, doi. 10.1186/1471-2105-13-S16-S4
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- Publication type:
- Article
Structure-based kernels for the prediction of catalytic residues and their involvement in human inherited disease.
- Published in:
- 2010
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- Publication type:
- Abstract
Analysis of AML genes in dysregulated molecular networks.
- Published in:
- BMC Bioinformatics, 2009, v. 10, p. 1, doi. 10.1186/1471-2105-10-S9-S2
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- Publication type:
- Article
The importance of intrinsic disorder for protein phosphorylation.
- Published in:
- Nucleic Acids Research, 2004, v. 32, n. 3, p. 1037, doi. 10.1093/nar/gkh253
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- Publication type:
- Article
New Drosophila Long-Term Memory Genes Revealed by Assessing Computational Function Prediction Methods.
- Published in:
- G3: Genes | Genomes | Genetics, 2019, v. 9, n. 1, p. 251, doi. 10.1534/g3.118.200867
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- Publication type:
- Article
Ten Simple Rules for a Community Computational Challenge.
- Published in:
- 2015
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- Publication type:
- Editorial
Bioinformatics Curriculum Guidelines: Toward a Definition of Core Competencies.
- Published in:
- PLoS Computational Biology, 2014, v. 10, n. 3, p. 1, doi. 10.1371/journal.pcbi.1003496
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- Publication type:
- Article
ISCB Computational Biology Wikipedia Competition.
- Published in:
- PLoS Computational Biology, 2013, v. 9, n. 9, p. 1, doi. 10.1371/journal.pcbi.1003242
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- Publication type:
- Article
An Integrated Regulatory Network Reveals Pervasive Cross-Regulation among Transcription and Splicing Factors.
- Published in:
- PLoS Computational Biology, 2012, v. 8, n. 7, p. 1, doi. 10.1371/journal.pcbi.1002603
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- Publication type:
- Article
Testing the Ortholog Conjecture with Comparative Functional Genomic Data from Mammals.
- Published in:
- PLoS Computational Biology, 2011, v. 7, n. 6, p. 1, doi. 10.1371/journal.pcbi.1002073
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- Publication type:
- Article
Influence of Sequence Changes and Environment on Intrinsically Disordered Proteins.
- Published in:
- PLoS Computational Biology, 2009, v. 5, n. 9, p. 1, doi. 10.1371/journal.pcbi.1000497
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- Publication type:
- Article
Intrinsic Disorder Is a Common Feature of Hub Proteins from Four Eukaryotic Interactomes.
- Published in:
- PLoS Computational Biology, 2006, v. 2, n. 8, p. e100, doi. 10.1371/journal.pcbi.0020100
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- Publication type:
- Article
Non-Specific Signal Peptidase Processing of Extracellular Proteins in Staphylococcus aureus N315.
- Published in:
- Proteomes, 2023, v. 11, n. 1, p. 8, doi. 10.3390/proteomes11010008
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- Publication type:
- Article
CAGI, the Critical Assessment of Genome Interpretation, establishes progress and prospects for computational genetic variant interpretation methods.
- Published in:
- Genome Biology, 2024, v. 25, n. 1, p. 1, doi. 10.1186/s13059-023-03113-6
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- Publication type:
- Article
CAGI, the Critical Assessment of Genome Interpretation, establishes progress and prospects for computational genetic variant interpretation methods.
- Published in:
- Genome Biology, 2024, v. 25, n. 1, p. 1, doi. 10.1186/s13059-023-03113-6
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- Publication type:
- Article
MutPred Splice: machine learning-based prediction of exonic variants that disrupt splicing.
- Published in:
- Genome Biology, 2014, v. 15, n. 1, p. 1, doi. 10.1186/gb-2014-15-1-r19
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- Publication type:
- Article
The Loss and Gain of Functional Amino Acid Residues Is a Common Mechanism Causing Human Inherited Disease.
- Published in:
- PLoS Computational Biology, 2016, v. 12, n. 8, p. 1, doi. 10.1371/journal.pcbi.1005091
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- Publication type:
- Article
Applying, Evaluating and Refining Bioinformatics Core Competencies (An Update from the Curriculum Task Force of ISCB’s Education Committee).
- Published in:
- PLoS Computational Biology, 2016, v. 12, n. 5, p. 1, doi. 10.1371/journal.pcbi.1004943
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- Publication type:
- Article
Fast and accurate identification of semi-tryptic peptides in shotgun proteomics.
- Published in:
- Bioinformatics, 2008, v. 24, n. 1, p. 102, doi. 10.1093/bioinformatics/btm545
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- Publication type:
- Article
Two Sample Logo: a graphical representation of the differences between two sets of sequence alignments.
- Published in:
- Bioinformatics, 2006, v. 22, n. 12, p. 1536, doi. 10.1093/bioinformatics/btl151
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- Publication type:
- Article
DisProt: a database of protein disorder.
- Published in:
- Bioinformatics, 2005, v. 21, n. 1, p. 137, doi. 10.1093/bioinformatics/bth476
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- Publication type:
- Article
Searching and visualizing genetic associations of pregnancy traits by using GnuMoM2b.
- Published in:
- Genetics, 2023, v. 225, n. 2, p. 1, doi. 10.1093/genetics/iyad151
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- Publication type:
- Article
Distinct error rates for reference and nonreference genotypes estimated by pedigree analysis.
- Published in:
- Genetics, 2021, v. 217, n. 1, p. 1, doi. 10.1093/genetics/iyaa014
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- Publication type:
- Article
Global human frequencies of predicted nuclear pathogenic variants and the role played by protein hydrophobicity in pathogenicity potential.
- Published in:
- Scientific Reports, 2014, p. 1, doi. 10.1038/srep07155
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- Publication type:
- Article
Learning from the unknown: exploring the range of bacterial functionality.
- Published in:
- Nucleic Acids Research, 2023, v. 51, n. 19, p. 10162, doi. 10.1093/nar/gkad757
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- Publication type:
- Article
Protein function in precision medicine: deep understanding with machine learning.
- Published in:
- FEBS Letters, 2016, v. 590, n. 15, p. 2327, doi. 10.1002/1873-3468.12307
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- Publication type:
- Article
Assessment of predicted enzymatic activity of α‐N‐acetylglucosaminidase variants of unknown significance for CAGI 2016.
- Published in:
- Human Mutation, 2019, v. 40, n. 9, p. 1519, doi. 10.1002/humu.23875
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- Publication type:
- Article
Assessing the performance of in silico methods for predicting the pathogenicity of variants in the gene CHEK2, among Hispanic females with breast cancer.
- Published in:
- Human Mutation, 2019, v. 40, n. 9, p. 1612, doi. 10.1002/humu.23849
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- Publication type:
- Article
Assessment of methods for predicting the effects of PTEN and TPMT protein variants.
- Published in:
- Human Mutation, 2019, v. 40, n. 9, p. 1495, doi. 10.1002/humu.23838
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- Publication type:
- Article
Predicting venous thromboembolism risk from exomes in the Critical Assessment of Genome Interpretation (CAGI) challenges.
- Published in:
- Human Mutation, 2019, v. 40, n. 9, p. 1314, doi. 10.1002/humu.23825
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- Publication type:
- Article
Assessment of patient clinical descriptions and pathogenic variants from gene panel sequences in the CAGI‐5 intellectual disability challenge.
- Published in:
- Human Mutation, 2019, v. 40, n. 9, p. 1330, doi. 10.1002/humu.23823
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- Publication type:
- Article