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Machine learning to estimate the local quality of protein crystal structures.
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- Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-02948-y
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- Article
TLR3 forms a laterally aligned multimeric complex along double-stranded RNA for efficient signal transduction.
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- Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-35844-2
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- Article
Structure of SARS-CoV-2 membrane protein essential for virus assembly.
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- Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-32019-3
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- Article
Molecular basis of ubiquitin-specific protease 8 autoinhibition by the WW-like domain.
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- Communications Biology, 2021, v. 4, n. 1, p. 1, doi. 10.1038/s42003-021-02802-x
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- Article
Energetics and conformational pathways of functional rotation in the multidrug transporter AcrB.
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- eLife, 2018, p. 1, doi. 10.7554/eLife.31715.001
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- Article
Solution structure of the isolated histone H2A-H2B heterodimer.
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- Scientific Reports, 2016, p. 24999, doi. 10.1038/srep24999
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- Article
Structural basis for ligand recognition and signaling of hydroxy-carboxylic acid receptor 2.
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- Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-42764-8
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- Article
Free-energy function for discriminating the native fold of a protein from misfolded decoys.
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- Proteins, 2011, v. 79, n. 7, p. 2161, doi. 10.1002/prot.23036
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- Article
Free-energy function based on an all-atom model for proteins.
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- Proteins, 2009, v. 77, n. 4, p. 950, doi. 10.1002/prot.22520
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- Article
Water-mediated interactions between DNA and PhoB DNA-binding/transactivation domain: NMR-restrained molecular dynamics in explicit water environment.
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- Proteins, 2008, v. 71, n. 4, p. 1970, doi. 10.1002/prot.21874
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- Article
Fission yeast Swi5/Sfr1 and Rhp55/Rhp57 differentially regulate Rhp51-dependent recombination outcomes.
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- EMBO Journal, 2007, v. 26, n. 5, p. 1352, doi. 10.1038/sj.emboj.7601582
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- Article
A novel magnetic resonance-based method to measure gene expression in living cells.
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- Nucleic Acids Research, 2006, v. 34, n. 6, p. e51
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- Article
The use of sequence comparison to detect `identities' in tRNA genes.
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- Nucleic Acids Research, 1998, v. 26, n. 8, p. 1974, doi. 10.1093/nar/26.8.1974
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- Article
Homology-modelled structure of the βB2B3-crystallin heterodimer studied by ion mobility and radical probe MS.
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- FEBS Journal, 2011, v. 278, n. 21, p. 4044, doi. 10.1111/j.1742-4658.2011.08309.x
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- Article
Comprehensive 3D‐RISM analysis of the hydration of small molecule binding sites in ligand‐free protein structures.
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- Journal of Computational Chemistry, 2020, v. 41, n. 28, p. 2406, doi. 10.1002/jcc.26406
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- Article
計算科学と実験科学の組み合わせにより明らかになった多剤排出トランスポーターAcrBの分子メカニズム
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- Seibutsu Butsuri, 2015, v. 55, n. 1, p. 27, doi. 10.2142/biophys.55.027
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- Article
全原子分子動力学計算が解き明かす分子モーターの回転機構.
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- Seibutsu Butsuri, 2015, v. 55, n. 1, p. 23, doi. 10.2142/biophys.55.023
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- Article
Development of the force field for cyclosporine A.
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- Biophysics & Physicobiology, 2022, v. 19, p. 1, doi. 10.2142/biophysico.bppb-v19.0045
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- Article
Combination of coarse-grained molecular dynamics simulations and small-angle X-ray scattering experiments.
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- Biophysics & Physicobiology, 2019, v. 16, n. 1, p. 377, doi. 10.2142/biophysico.16.0_377
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- Article
Moving toward generalizable NZ‐1 labeling for 3D structure determination with optimized epitope‐tag insertion.
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- Acta Crystallographica: Section D, Structural Biology, 2021, v. 77, n. 5, p. 645, doi. 10.1107/S2059798321002527
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- Article
Structural and dynamical insights into the PH domain of p62 in human TFIIH.
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- Nucleic Acids Research, 2021, v. 49, n. 5, p. 2916, doi. 10.1093/nar/gkaa1045
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- Article
Rotational Mechanism Model of the Bacterial V<sub>1</sub> Motor Based on Structural and Computational Analyses.
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- Frontiers in Physiology, 2019, p. N.PAG, doi. 10.3389/fphys.2019.00046
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Front Cover: Imidazolinium‐based Multiblock Amphiphile as Transmembrane Anion Transporter (2/2021).
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- Chemistry - An Asian Journal, 2021, v. 16, n. 2, p. 110, doi. 10.1002/asia.202001415
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- Article
Imidazolinium‐based Multiblock Amphiphile as Transmembrane Anion Transporter.
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- Chemistry - An Asian Journal, 2021, v. 16, n. 2, p. 147, doi. 10.1002/asia.202001106
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- Article
Molecular modeling of the HAMP domain of sensory rhodopsin II transducer from Natronomonas pharaonis.
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- Biophysics (13492942), 2010, v. 6, p. 27, doi. 10.2142/biophysics.6.27
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- Article
Linear response theory in dihedral angle space for protein structural change upon ligand binding.
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- Journal of Computational Chemistry, 2009, v. 30, n. 16, p. 2602, doi. 10.1002/jcc.21269
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- Article
Partial rigid-body dynamics in NPT, NPAT and NPγT ensembles for proteins and membranes.
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- Journal of Computational Chemistry, 2004, v. 25, n. 4, p. 529
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- Article
New method for parallel computation of Hessian matrix of conformational energy function in internal coordinates.
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- Journal of Computational Chemistry, 2002, v. 23, n. 4, p. 463, doi. 10.1002/jcc.10039
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- Article
Parallel algorithm for efficient calculation of second derivatives of conformational energy function in internal coordinates.
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- Journal of Computational Chemistry, 1998, v. 19, n. 15, p. 1716, doi. 10.1002/(SICI)1096-987X(19981130)19:15<1716::AID-JCC4>3.0.CO;2-Q
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- Article
Structural basis for hepatitis B virus restriction by a viral receptor homologue.
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- Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-53533-6
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- Article
Comparative simulations of aquaporin family: AQP1, AQPZ, AQP0 and GlpF
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- FEBS Letters, 2005, v. 579, n. 25, p. 5549, doi. 10.1016/j.febslet.2005.09.018
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- Article
Comparison of the Molecular Motility of Tubulin Dimeric Isoforms: Molecular Dynamics Simulations and Diffracted X-ray Tracking Study.
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- International Journal of Molecular Sciences, 2023, v. 24, n. 20, p. 15423, doi. 10.3390/ijms242015423
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- Article
Structural analysis reveals TLR7 dynamics underlying antagonism.
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- Nature Communications, 2020, v. 11, n. 1, p. N.PAG, doi. 10.1038/s41467-020-19025-z
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- Article
Real-time tracking reveals catalytic roles for the two DNA binding sites of Rad51.
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- Nature Communications, 2020, v. 11, n. 1, p. 1, doi. 10.1038/s41467-020-16750-3
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- Article
A synthetic ion channel with anisotropic ligand response.
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- Nature Communications, 2020, v. 11, n. 1, p. 1, doi. 10.1038/s41467-020-16770-z
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- Article
Force‐field parametrization based on radial and energy distribution functions.
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- Journal of Computational Chemistry, 2019, v. 40, n. 29, p. 2577, doi. 10.1002/jcc.26035
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Structural fluctuation and concerted motions in F<sub>1</sub>-ATPase: A molecular dynamics study.
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- Journal of Computational Chemistry, 2010, v. 31, n. 11, p. 2175, doi. 10.1002/jcc.21508
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Hybrid in vitro/in silico analysis of low‐affinity protein–protein interactions that regulate signal transduction by Sema6D.
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- Protein Science: A Publication of the Protein Society, 2022, v. 31, n. 11, p. 1, doi. 10.1002/pro.4452
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- Article