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Introducing the CPL/MUW proteome database: Interpretation of human liver and liver cancer proteome profiles by referring to isolated primary cells.
Published in:
Electrophoresis, 2009, v. 30, n. 12, p. 2076, doi. 10.1002/elps.200900072
By:
- Wimmer, Helge;
- Gundacker, Nina C.;
- Griss, Johannes;
- Haudek, Verena J.;
- Stättner, Stefan;
- Mohr, Thomas;
- Zwickl, Hannes;
- Paulitschke, Verena;
- Baron, David M.;
- Trittner, Wolfgang;
- Kubicek, Markus;
- Bayer, Editha;
- Slany, Astrid;
- Gerner, Christopher
Publication type:
Article
Introducing a new parameter for quality control of proteome profiles: Consideration of commonly expressed proteins.
Published in:
Electrophoresis, 2009, v. 30, n. 8, p. 1306, doi. 10.1002/elps.200800440
By:
- Slany, Astrid;
- Haudek, Verena J.;
- Gundacker, Nina C.;
- Griss, Johannes;
- Mohr, Thomas;
- Wimmer, Helge;
- Eisenbauer, Maria;
- Elbling, Leonilla;
- Gerner, Christopher
Publication type:
Article
The PRIDE database and related tools and resources in 2019: improving support for quantification data.
Published in:
Nucleic Acids Research, 2019, v. 47, n. D1, p. D442, doi. 10.1093/nar/gky1106
By:
- Perez-Riverol, Yasset;
- Csordas, Attila;
- Bai, Jingwen;
- Bernal-Llinares, Manuel;
- Hewapathirana, Suresh;
- Kundu, Deepti J;
- Inuganti, Avinash;
- Griss, Johannes;
- Mayer, Gerhard;
- Eisenacher, Martin;
- Pérez, Enrique;
- Uszkoreit, Julian;
- Pfeuffer, Julianus;
- Sachsenberg, Timo;
- Yılmaz, Şule;
- Tiwary, Shivani;
- Cox, Jürgen;
- Audain, Enrique;
- Walzer, Mathias;
- Jarnuczak, Andrew F
Publication type:
Article
2016 update of the PRIDE database and its related tools.
Published in:
Nucleic Acids Research, 2016, v. 44, n. 1, p. D447, doi. 10.1093/nar/gkv1145
By:
- Antonio Vizcaíno, Juan;
- Csordas, Attila;
- del-Toro, Noemi;
- Dianes, José A.;
- Griss, Johannes;
- Lavidas, Ilias;
- Mayer, Gerhard;
- Perez-Riverol, Yasset;
- Reisinger, Florian;
- Ternent, Tobias;
- Qing-Wei Xu;
- Rui Wang;
- Henning Hermjakob
Publication type:
Article
The Proteomics Identifications (PRIDE) database and associated tools: status in 2013.
Published in:
Nucleic Acids Research, 2013, v. 41, p. D1063, doi. 10.1093/nar/gks1262
By:
- Vizcaíno, Juan Antonio;
- Côté, Richard G.;
- Csordas, Attila;
- Dianes, José A.;
- Fabregat, Antonio;
- Foster, Joseph M.;
- Griss, Johannes;
- Alpi, Emanuele;
- Birim, Melih;
- Contell, Javier;
- O'Kelly, Gavin;
- Schoenegger, Andreas;
- Ovelleiro, David;
- Pérez-Riverol, Yasset;
- Reisinger, Florian;
- Ríos, Daniel;
- Rui Wang;
- Hermjakob, Henning
Publication type:
Article
A proteomics sample metadata representation for multiomics integration and big data analysis.
Published in:
Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-26111-3
By:
- Dai, Chengxin;
- Füllgrabe, Anja;
- Pfeuffer, Julianus;
- Solovyeva, Elizaveta M.;
- Deng, Jingwen;
- Moreno, Pablo;
- Kamatchinathan, Selvakumar;
- Kundu, Deepti Jaiswal;
- George, Nancy;
- Fexova, Silvie;
- Grüning, Björn;
- Föll, Melanie Christine;
- Griss, Johannes;
- Vaudel, Marc;
- Audain, Enrique;
- Locard-Paulet, Marie;
- Turewicz, Michael;
- Eisenacher, Martin;
- Uszkoreit, Julian;
- Van Den Bossche, Tim
Publication type:
Article
PRIDE Inspector: a tool to visualize and validate MS proteomics data.
Published in:
2012
By:
- Wang, Rui;
- Fabregat, Antonio;
- Ríos, Daniel;
- Ovelleiro, David;
- Foster, Joseph M;
- Côté, Richard G;
- Griss, Johannes;
- Csordas, Attila;
- Perez-Riverol, Yasset;
- Reisinger, Florian;
- Hermjakob, Henning;
- Martens, Lennart;
- Vizcaíno, Juan Antonio
Publication type:
Letter
PRIDE Cluster: building a consensus of proteomics data.
Published in:
Nature Methods, 2013, v. 10, n. 2, p. 95, doi. 10.1038/nmeth.2343
By:
- Griss, Johannes;
- Foster, Joseph M;
- Hermjakob, Henning;
- Vizcaíno, Juan Antonio
Publication type:
Article
ReactomeGSA: new features to simplify public data reuse.
Published in:
Bioinformatics, 2024, v. 40, n. 6, p. 1, doi. 10.1093/bioinformatics/btae338
By:
- Grentner, Alexander;
- Ragueneau, Eliot;
- Gong, Chuqiao;
- Prinz, Adrian;
- Gansberger, Sabina;
- Oyarzun, Inigo;
- Hermjakob, Henning;
- Griss, Johannes
Publication type:
Article
Dupilumab-associated head and neck dermatitis shows a pronounced type 22 immune signature mediated by oligoclonally expanded T cells.
Published in:
Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-46540-0
By:
- Bangert, Christine;
- Alkon, Natalia;
- Chennareddy, Sumanth;
- Arnoldner, Tamara;
- Levine, Jasmine P.;
- Pilz, Magdalena;
- Medjimorec, Marco A.;
- Ruggiero, John;
- Cohenour, Emry R.;
- Jonak, Constanze;
- Damsky, William;
- Griss, Johannes;
- Brunner, Patrick M.
Publication type:
Article
Mortalität, prognostische Parameter und Behandlungsstrategien bei Mycosis fungoides.
Published in:
Journal der Deutschen Dermatologischen Gesellschaft, 2024, v. 22, n. 4, p. 532, doi. 10.1111/ddg.15331_g
By:
- Porkert, Stefanie;
- Griss, Johannes;
- Hudelist‐Venz, Mercedes;
- Steiner, Irene;
- Valencak, Julia;
- Weninger, Wolfgang;
- Brunner, Patrick M.;
- Jonak, Constanze
Publication type:
Article
Evaluation of mortality, prognostic parameters, and treatment efficacy in mycosis fungoides.
Published in:
Journal der Deutschen Dermatologischen Gesellschaft, 2024, v. 22, n. 4, p. 532, doi. 10.1111/ddg.15331
By:
- Porkert, Stefanie;
- Griss, Johannes;
- Hudelist‐Venz, Mercedes;
- Steiner, Irene;
- Valencak, Julia;
- Weninger, Wolfgang;
- Brunner, Patrick M.;
- Jonak, Constanze
Publication type:
Article
ÖGDV Preisträger stellen sich vor: Der Wissenschaftspreis der ÖGDV 2019 ging an Dr. Johannes Griss und Dr. Philipp Tschandl.
Published in:
Journal der Deutschen Dermatologischen Gesellschaft, 2020, v. 18, n. 3, p. 302, doi. 10.1111/ddg.14045_g
By:
- Griss, Johannes;
- Tschandl, Philipp
Publication type:
Article
Spectral library searching in proteomics.
Published in:
Proteomics, 2016, v. 16, n. 5, p. 729, doi. 10.1002/pmic.201500296
By:
- Griss, Johannes
Publication type:
Article
Analysis of the tryptic search space in UniProt databases.
Published in:
Proteomics, 2015, v. 15, n. 1, p. 48, doi. 10.1002/pmic.201400227
By:
- Alpi, Emanuele;
- Griss, Johannes;
- da Silva, Alan Wilter Sousa;
- Bely, Benoit;
- Antunes, Ricardo;
- Zellner, Hermann;
- Ríos, Daniel;
- O'Donovan, Claire;
- Vizcaíno, Juan Antonio;
- Martin, Maria J.
Publication type:
Article
jmzTab: A Java interface to the mzTab data standard.
Published in:
Proteomics, 2014, v. 14, n. 11, p. 1328, doi. 10.1002/pmic.201300560
By:
- Xu, Qing‐Wei;
- Griss, Johannes;
- Wang, Rui;
- Jones, Andrew R.;
- Hermjakob, Henning;
- Vizcaíno, Juan Antonio
Publication type:
Article
jmzReader: A Java parser library to process and visualize multiple text and XML-based mass spectrometry data formats.
Published in:
Proteomics, 2012, v. 12, n. 6, p. 795, doi. 10.1002/pmic.201100578
By:
- Griss, Johannes;
- Reisinger, Florian;
- Hermjakob, Henning;
- Vizcaíno, Juan Antonio
Publication type:
Article
Consequences of the discontinuation of the International Protein Index (IPI) database and its substitution by the UniProtKB 'complete proteome' sets.
Published in:
Proteomics, 2011, v. 11, n. 22, p. 4434, doi. 10.1002/pmic.201100363
By:
- Griss, Johannes;
- Martín, María;
- O'Donovan, Claire;
- Apweiler, Rolf;
- Hermjakob, Henning;
- Vizcaíno, Juan Antonio
Publication type:
Article
A posteriori quality control for the curation and reuse of public proteomics data.
Published in:
Proteomics, 2011, v. 11, n. 11, p. 2182, doi. 10.1002/pmic.201000602
By:
- Foster, Joseph M.;
- Degroeve, Sven;
- Gatto, Laurent;
- Visser, Matthieu;
- Wang, Rui;
- Griss, Johannes;
- Apweiler, Rolf;
- Martens, Lennart
Publication type:
Article
GPDE: A biological proteomic database for biomarker discovery and evaluation.
Published in:
Proteomics, 2011, v. 11, n. 5, p. 1000, doi. 10.1002/pmic.201000507
By:
- Griss, Johannes;
- Haudek-Prinz, Verena;
- Gerner, Christopher
Publication type:
Article
Orally Administered Rapamycin, Dacarbazine or Both for Treatment of Human Melanoma Evaluated in Severe Combined Immunodeficiency Mice.
Published in:
Pharmacology, 2008, v. 82, n. 3, p. 233, doi. 10.1159/000156490
By:
- Thallinger, Christiane;
- Skorjanec, Sophie;
- Soleiman, Afschin;
- Tzaneva, Stanislava;
- Griss, Johannes;
- Rous, Wolfgang;
- Poeppl, Wolfgang;
- Weinlich, Georg;
- Karimian-Teherani, Daniela;
- Joukhadar, Christian
Publication type:
Article
No impact of disease duration on response to tildrakizumab treatment among patients with moderate‐to‐severe plaque psoriasis: Post hoc analyses from two phase 3 (reSURFACE 1 and reSURFACE 2) and one phase 4 (TRIBUTE) studies.
Published in:
Skin Health & Disease, 2023, v. 3, n. 5, p. 1, doi. 10.1002/ski2.263
By:
- Griss, Johannes;
- Ratzinger, Gudrun;
- Maul, Julia‐Tatjana;
- Weger, Wolfgang;
- Thaçi, Diamant;
- Carrascosa, José Manuel;
- Jonak, Constanze
Publication type:
Article
B cells sustain inflammation and predict response to immune checkpoint blockade in human melanoma.
Published in:
Nature Communications, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41467-019-12160-2
By:
- Griss, Johannes;
- Bauer, Wolfgang;
- Wagner, Christine;
- Simon, Martin;
- Chen, Minyi;
- Grabmeier-Pfistershammer, Katharina;
- Maurer-Granofszky, Margarita;
- Roka, Florian;
- Penz, Thomas;
- Bock, Christoph;
- Zhang, Gao;
- Herlyn, Meenhard;
- Glatz, Katharina;
- Läubli, Heinz;
- Mertz, Kirsten D.;
- Petzelbauer, Peter;
- Wiesner, Thomas;
- Hartl, Markus;
- Pickl, Winfried F.;
- Somasundaram, Rajasekharan
Publication type:
Article
Separating Golgi Proteins from Cis to Trans Reveals Underlying Properties of Cisternal Localization.
Published in:
Plant Cell, 2019, v. 31, n. 9, p. 2010, doi. 10.1105/tpc.19.00081
By:
- 2, Harriet T. Parsons;
- Stevens, Tim J.;
- McFarlane, Heather E.;
- Vidal-Melgosa, Silvia;
- Griss, Johannes;
- Lawrence, Nicola;
- Butler, Richard;
- Sousa, Mirta M.L.;
- Salemi, Michelle;
- Willats, William G.T.;
- Petzold, Christopher J.;
- Heazlewood, Joshua L.;
- Lilley, Kathryn S.
Publication type:
Article
Future Prospects of Spectral Clustering Approaches in Proteomics.
Published in:
Proteomics, 2018, v. 18, n. 14, p. 1, doi. 10.1002/pmic.201700454
By:
- Perez‐Riverol, Yasset;
- Vizcaíno, Juan Antonio;
- Griss, Johannes
Publication type:
Article
Persistence of mature dendritic cells, T<sub>H</sub>2A, and Tc2 cells characterize clinically resolved atopic dermatitis under IL-4Rα blockade.
Published in:
Science Immunology, 2021, v. 6, n. 55, p. 1, doi. 10.1126/sciimmunol.abe2749
By:
- Bangert, Christine;
- Rindler, Katharina;
- Krausgruber, Thomas;
- Alkon, Natalia;
- Thaler, Felix M.;
- Kurz, Harald;
- Ayub, Tanya;
- Demirtas, Denis;
- Fortelny, Nikolaus;
- Vorstandlechner, Vera;
- Bauer, Wolfgang M.;
- Quint, Tamara;
- Mildner, Michael;
- Jonak, Constanze;
- Elbe-Bürger, Adelheid;
- Griss, Johannes;
- Bock, Christoph;
- Brunner, Patrick M.
Publication type:
Article
Digital image analysis improves precision of PD‐L1 scoring in cutaneous melanoma.
Published in:
Histopathology, 2018, v. 73, n. 3, p. 397, doi. 10.1111/his.13528
By:
- Koelzer, Viktor H.;
- Gisler, Aline;
- Hanhart, Jonathan C.;
- Griss, Johannes;
- Wagner, Stephan N.;
- Willi, Niels;
- Cathomas, Gieri;
- Sachs, Melanie;
- Kempf, Werner;
- Thommen, Daniela S.;
- Mertz, Kirsten D.
Publication type:
Article
A Standardized Analysis of Tertiary Lymphoid Structures in Human Melanoma: Disease Progression- and Tumor Site-Associated Changes With Germinal Center Alteration.
Published in:
Frontiers in Immunology, 2021, v. 12, p. 1, doi. 10.3389/fimmu.2021.675146
By:
- Werner, Franziska;
- Wagner, Christine;
- Simon, Martin;
- Glatz, Katharina;
- Mertz, Kirsten D.;
- Läubli, Heinz;
- Griss, Johannes;
- Wagner, Stephan N.
Publication type:
Article
Spontaneously Resolved Atopic Dermatitis Shows Melanocyte and Immune Cell Activation Distinct From Healthy Control Skin.
Published in:
Frontiers in Immunology, 2021, v. 11, p. N.PAG, doi. 10.3389/fimmu.2021.630892
By:
- Rindler, Katharina;
- Krausgruber, Thomas;
- Thaler, Felix M.;
- Alkon, Natalia;
- Bangert, Christine;
- Kurz, Harald;
- Fortelny, Nikolaus;
- Rojahn, Thomas B.;
- Jonak, Constanze;
- Griss, Johannes;
- Bock, Christoph;
- Brunner, Patrick M.
Publication type:
Article
Autoantibody Levels and Clinical Disease Severity in Patients with Pemphigus: Comparison of Aggregated Anti-desmoglein ELISA Values and Indirect Immunofluorescence Titres.
Published in:
Acta Dermato-Venereologica, 2015, v. 95, n. 5, p. 559, doi. 10.2340/00015555-2023
By:
- WEISS, Doris;
- RISTL, Robin;
- GRISS, Johannes;
- BANGERT, Christine;
- FOEDINGER, Dagmar;
- STINGL, Georg;
- BRUNNER, Patrick M.
Publication type:
Article
Loss of Lymphotoxin Alpha-Expressing Memory B Cells Correlates with Metastasis of Human Primary Melanoma.
Published in:
Diagnostics (2075-4418), 2021, v. 11, n. 7, p. 1238, doi. 10.3390/diagnostics11071238
By:
- Werner, Franziska;
- Wagner, Christine;
- Simon, Martin;
- Glatz, Katharina;
- Mertz, Kirsten D.;
- Läubli, Heinz;
- Richtig, Erika;
- Griss, Johannes;
- Wagner, Stephan N.
Publication type:
Article
The Reactome Pathway Knowledgebase 2024.
Published in:
Nucleic Acids Research, 2024, v. 52, n. D1, p. D672, doi. 10.1093/nar/gkad1025
By:
- Milacic, Marija;
- Beavers, Deidre;
- Conley, Patrick;
- Gong, Chuqiao;
- Gillespie, Marc;
- Griss, Johannes;
- Haw, Robin;
- Jassal, Bijay;
- Matthews, Lisa;
- May, Bruce;
- Petryszak, Robert;
- Ragueneau, Eliot;
- Rothfels, Karen;
- Sevilla, Cristoffer;
- Shamovsky, Veronica;
- Stephan, Ralf;
- Tiwari, Krishna;
- Varusai, Thawfeek;
- Weiser, Joel;
- Wright, Adam
Publication type:
Article
reactome pathway knowledgebase 2022.
Published in:
Nucleic Acids Research, 2022, v. 50, n. D1, p. D687, doi. 10.1093/nar/gkab1028
By:
- Gillespie, Marc;
- Jassal, Bijay;
- Stephan, Ralf;
- Milacic, Marija;
- Rothfels, Karen;
- Senff-Ribeiro, Andrea;
- Griss, Johannes;
- Sevilla, Cristoffer;
- Matthews, Lisa;
- Gong, Chuqiao;
- Deng, Chuan;
- Varusai, Thawfeek;
- Ragueneau, Eliot;
- Haider, Yusra;
- May, Bruce;
- Shamovsky, Veronica;
- Weiser, Joel;
- Brunson, Timothy;
- Sanati, Nasim;
- Beckman, Liam
Publication type:
Article
Tumor-associated B-cells induce tumor heterogeneity and therapy resistance.
Published in:
Nature Communications, 2017, v. 8, n. 1, p. 1, doi. 10.1038/s41467-017-00452-4
By:
- Somasundaram, Rajasekharan;
- Gao Zhang;
- Fukunaga-Kalabis, Mizuho;
- Perego, Michela;
- Krepler, Clemens;
- Xiaowei Xu;
- Wagner, Christine;
- Hristova, Denitsa;
- Jie Zhang;
- Tian Tian;
- Zhi Wei;
- Qin Liu;
- Garg, Kanika;
- Griss, Johannes;
- Hards, Rufus;
- Maurer, Margarita;
- Hafner, Christine;
- Mayerhöfer, Marius;
- Karanikas, Georgios;
- Jalili, Ahmad
Publication type:
Article
Using the Reactome Database.
Published in:
Current Protocols, 2023, v. 3, n. 4, p. 1, doi. 10.1002/cpz1.722
By:
- Rothfels, Karen;
- Milacic, Marija;
- Matthews, Lisa;
- Haw, Robin;
- Sevilla, Cristoffer;
- Gillespie, Marc;
- Stephan, Ralf;
- Gong, Chuqiao;
- Ragueneau, Eliot;
- May, Bruce;
- Shamovsky, Veronica;
- Wright, Adam;
- Weiser, Joel;
- Beavers, Deidre;
- Conley, Patrick;
- Tiwari, Krishna;
- Jassal, Bijay;
- Griss, Johannes;
- Senff‐Ribeiro, Andrea;
- Brunson, Timothy
Publication type:
Article
scAnnotatR: framework to accurately classify cell types in single-cell RNA-sequencing data.
Published in:
BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-04574-5
By:
- Nguyen, Vy;
- Griss, Johannes
Publication type:
Article
BioContainers: an open-source and community-driven framework for software standardization.
Published in:
Bioinformatics, 2017, v. 33, n. 16, p. 2580, doi. 10.1093/bioinformatics/btx192
By:
- Leprevost, Felipe da Veiga;
- Grüning, Björn A.;
- Aflitos, Saulo Alves;
- Röst, Hannes L.;
- Uszkoreit, Julian;
- Barsnes, Harald;
- Vaudel, Marc;
- Moreno, Pablo;
- Gatto, Laurent;
- Weber, Jonas;
- Mingze Bai;
- Jimenez, Rafael C.;
- Sachsenberg, Timo;
- Pfeuffer, Julianus;
- Alvarez, Roberto Vera;
- Griss, Johannes;
- Nesvizhskii, Alexey I.;
- Perez-Riverol, Yasset
Publication type:
Article
Cornification of keratinocytes is associated with differential changes in the catalytic activity and the immunoreactivity of transglutaminase-1.
Published in:
Scientific Reports, 2023, v. 13, n. 1, p. 1, doi. 10.1038/s41598-023-48856-1
By:
- Surbek, Marta;
- Van de Steene, Tessa;
- Sachslehner, Attila Placido;
- Golabi, Bahar;
- Griss, Johannes;
- Eyckerman, Sven;
- Gevaert, Kris;
- Eckhart, Leopold
Publication type:
Article
Identifying novel biomarkers through data mining-A realistic scenario?
Published in:
Proteomics - Clinical Applications, 2015, v. 9, n. 3/4, p. 437, doi. 10.1002/prca.201400107
By:
- Griss, Johannes;
- Perez-Riverol, Yasset;
- Hermjakob, Henning;
- Vizcaíno, Juan Antonio
Publication type:
Article
GPDE: A biological proteomic database for biomarker discovery and evaluation.
Published in:
Proteomics - Clinical Applications, 2011, v. 5, n. 9/10, p. 545, doi. 10.1002/prca.201190067
By:
- Griss, Johannes;
- Haudek-Prinz, Verena;
- Gerner, Christopher
Publication type:
Article

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